Wall clock time and date at job start Tue Mar 31 2020 03:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.37152 * 59.29323 * 5 3 2 7 7 C 1.54382 * 110.41071 * 296.94567 * 5 3 2 8 8 C 1.54258 * 105.06261 * 217.36873 * 7 5 3 9 9 H 1.09002 * 110.32632 * 241.09828 * 8 7 5 10 10 O 1.42901 * 110.32150 * 118.89720 * 8 7 5 11 11 C 1.54374 * 105.06095 * 359.97438 * 8 7 5 12 12 N 1.48558 * 110.41658 * 181.64986 * 5 3 2 13 13 C 1.46905 * 110.99920 * 277.82101 * 12 5 3 14 14 C 1.50694 * 109.47354 * 169.99788 * 13 12 5 15 15 O 1.21283 * 119.99975 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99923 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99647 * 179.97438 * 16 14 13 18 18 C 1.50705 * 109.46849 * 179.97438 * 17 16 14 19 19 H 1.07993 * 119.99828 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00087 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99815 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00149 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46780 * 60.00729 * 22 20 18 24 24 H 1.48499 * 109.46959 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47260 * 300.00461 * 22 20 18 26 26 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 27 27 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 28 28 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09007 * 110.32077 * 336.26836 * 7 5 3 30 30 H 1.08999 * 110.32667 * 98.46616 * 7 5 3 31 31 H 0.96702 * 113.99794 * 179.97438 * 10 8 7 32 32 H 1.09003 * 110.41490 * 142.62749 * 11 8 7 33 33 H 1.08998 * 110.41531 * 264.95689 * 11 8 7 34 34 H 1.09002 * 109.46279 * 289.99342 * 13 12 5 35 35 H 1.08996 * 109.47239 * 49.98789 * 13 12 5 36 36 H 0.96990 * 120.00096 * 359.97438 * 16 14 13 37 37 H 1.08995 * 109.47475 * 299.99684 * 17 16 14 38 38 H 1.09003 * 109.47253 * 60.00031 * 17 16 14 39 39 H 0.97000 * 119.99849 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9722 0.7739 -0.8794 7 6 4.1388 0.6480 1.2889 8 6 5.3435 1.5350 1.6651 9 1 6.2619 0.9480 1.6609 10 8 5.1398 2.1305 2.9481 11 6 5.3980 2.6228 0.5711 12 7 4.0110 2.6918 0.0396 13 6 3.9879 3.2890 -1.3023 14 6 4.2038 4.7765 -1.1940 15 8 4.3610 5.2888 -0.1059 16 7 4.2223 5.5375 -2.3062 17 6 4.4316 6.9836 -2.2007 18 6 4.4093 7.5961 -3.5775 19 1 4.2542 6.9708 -4.4442 20 6 4.5858 8.9550 -3.7305 21 7 4.7741 9.7166 -2.6750 22 14 4.5574 9.7143 -5.4370 23 1 3.2428 9.4493 -6.0748 24 1 4.7697 11.1801 -5.3301 25 1 5.6376 9.1170 -6.2626 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.3921 0.6669 2.0828 30 1 4.4658 -0.3744 1.1000 31 1 5.8663 2.6994 3.2374 32 1 5.6882 3.5811 1.0018 33 1 6.0937 2.3349 -0.2170 34 1 4.7801 2.8501 -1.9089 35 1 3.0226 3.0950 -1.7698 36 1 4.0970 5.1278 -3.1763 37 1 3.6390 7.4223 -1.5947 38 1 5.3967 7.1779 -1.7326 39 1 4.8979 10.6726 -2.7826 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163821681.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:41 Heat of formation + Delta-G solvation = -154.339507 kcal Electronic energy + Delta-G solvation = -23042.493361 eV Core-core repulsion = 19371.844342 eV Total energy + Delta-G solvation = -3670.649019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 4.53 seconds Orbital eigenvalues (eV) -40.86310 -39.37126 -38.22185 -36.56431 -35.67261 -34.09515 -32.32922 -31.78620 -29.62549 -27.88314 -27.52330 -25.89466 -23.30521 -22.31525 -21.23694 -20.50455 -19.62688 -17.97103 -17.38004 -17.00835 -16.86687 -16.58012 -15.90597 -15.57780 -15.14014 -14.88172 -14.56838 -14.15104 -13.96802 -13.52257 -13.33476 -13.14350 -12.83444 -12.58396 -12.33806 -12.04350 -11.99322 -11.91963 -11.83565 -11.25433 -11.25103 -10.97554 -10.90987 -10.82644 -10.37837 -10.29006 -10.08599 -9.38564 -9.07142 -8.70388 -8.48918 -7.82148 -6.14201 -4.21171 2.13520 2.39746 3.26384 3.30993 3.32563 3.43127 3.59744 3.97454 4.16803 4.30390 4.41404 4.50954 4.69693 4.75081 4.93702 4.95899 5.02371 5.20031 5.21587 5.24159 5.33811 5.35050 5.36988 5.55343 5.64030 5.71114 5.96769 6.21852 6.56714 6.70857 7.35159 7.49146 7.56199 7.57899 7.70142 7.72310 8.00065 8.67256 8.82059 9.17100 9.45512 10.96004 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.003602 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.925502 B = 7771.596606 C = 8672.075682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.464 3.536 4 O -0.473 6.473 5 C 0.069 3.931 6 H 0.092 0.908 7 C -0.103 4.103 8 C 0.103 3.897 9 H 0.070 0.930 10 O -0.555 6.555 11 C 0.005 3.995 12 N -0.462 5.462 13 C 0.023 3.977 14 C 0.504 3.496 15 O -0.534 6.534 16 N -0.716 5.716 17 C 0.252 3.748 18 C -0.544 4.544 19 H 0.062 0.938 20 C 0.064 3.936 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.276 1.276 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.382 0.618 32 H 0.109 0.891 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.389 0.611 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.677 -23.324 4.553 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.304 3.696 4 O -0.357 6.357 5 C -0.041 4.041 6 H 0.110 0.890 7 C -0.141 4.141 8 C 0.044 3.956 9 H 0.088 0.912 10 O -0.361 6.361 11 C -0.123 4.123 12 N -0.187 5.187 13 C -0.109 4.109 14 C 0.287 3.713 15 O -0.411 6.411 16 N -0.365 5.365 17 C 0.132 3.868 18 C -0.582 4.582 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.230 0.770 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.221 0.779 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.686 -22.392 5.692 23.166 hybrid contribution 0.645 0.285 -2.040 2.159 sum -1.042 -22.108 3.652 22.431 Atomic orbital electron populations 1.23252 0.76253 1.03487 1.02763 1.86466 1.23432 1.33509 1.84679 1.23322 0.91307 0.81540 0.73428 1.90746 1.66315 1.36057 1.42551 1.22223 0.88682 0.92452 1.00756 0.89041 1.22249 0.98092 0.98249 0.95549 1.22472 0.96984 0.92585 0.83608 0.91193 1.86549 1.48759 1.67043 1.33774 1.24054 0.88676 1.01835 0.97716 1.64785 1.20600 1.11544 1.21734 1.22288 1.03043 0.95266 0.90253 1.20051 0.78244 0.87742 0.85243 1.90655 1.49276 1.74211 1.26993 1.46418 1.71572 1.11022 1.07524 1.19072 0.97169 0.73241 0.97352 1.21197 1.51780 0.93101 0.92121 0.91996 1.24953 0.94741 0.96933 0.97386 1.69970 1.47575 1.05682 1.29057 0.86474 0.78632 0.78120 0.83663 1.20069 1.21062 1.20107 0.91813 0.91883 0.88158 0.89004 0.88798 0.77040 0.87331 0.92813 0.91871 0.88215 0.77934 0.95535 0.95634 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.37 16 2 O -0.36 -3.97 10.56 -39.24 -0.41 -4.38 16 3 C 0.46 6.25 6.92 36.00 0.25 6.50 16 4 O -0.47 -8.33 15.58 -18.76 -0.29 -8.62 16 5 C 0.07 0.79 2.78 -67.22 -0.19 0.61 16 6 H 0.09 0.79 7.99 -51.93 -0.42 0.37 16 7 C -0.10 -1.01 6.34 -25.35 -0.16 -1.17 16 8 C 0.10 1.04 4.42 -25.35 -0.11 0.93 16 9 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 10 O -0.56 -6.56 13.26 -35.23 -0.47 -7.03 16 11 C 0.00 0.06 5.67 -2.11 -0.01 0.05 16 12 N -0.46 -6.97 4.25 -224.82 -0.96 -7.92 16 13 C 0.02 0.35 5.12 -4.98 -0.03 0.33 16 14 C 0.50 10.51 7.68 -10.99 -0.08 10.43 16 15 O -0.53 -13.36 15.24 5.56 0.08 -13.27 16 16 N -0.72 -15.54 5.55 -61.47 -0.34 -15.88 16 17 C 0.25 6.85 5.43 -5.19 -0.03 6.82 16 18 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16 19 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 22 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 27 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.05 7.69 -51.92 -0.40 0.65 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.38 3.08 9.12 45.56 0.42 3.49 16 32 H 0.11 1.66 7.19 -51.93 -0.37 1.28 16 33 H 0.05 0.56 7.76 -51.93 -0.40 0.16 16 34 H 0.06 0.76 7.77 -51.93 -0.40 0.36 16 35 H 0.10 1.49 7.35 -51.93 -0.38 1.11 16 36 H 0.39 7.18 8.32 -40.82 -0.34 6.84 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 334.31 15.07 5.04 5.04 Total: -1.00 -37.38 334.31 -6.13 -43.52 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.79 Total: 5.99 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 0.29 Total: 12.24 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.56 Total: -49.53 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -1.09 Total: -33.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.38 -6.13 -43.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163821681.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.820 kcal (2) G-P(sol) polarization free energy of solvation -37.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.53 seconds