Wall clock time and date at job start Tue Mar 31 2020 03:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.37152 * 59.29323 * 5 3 2 7 7 C 1.54382 * 110.41071 * 296.94567 * 5 3 2 8 8 C 1.54258 * 105.06261 * 217.36873 * 7 5 3 9 9 H 1.09002 * 110.32632 * 241.09828 * 8 7 5 10 10 O 1.42901 * 110.32150 * 118.89720 * 8 7 5 11 11 C 1.54374 * 105.06095 * 359.97438 * 8 7 5 12 12 N 1.48558 * 110.41658 * 181.64986 * 5 3 2 13 13 C 1.46905 * 110.99920 * 277.82101 * 12 5 3 14 14 C 1.50694 * 109.47354 * 169.99788 * 13 12 5 15 15 O 1.21283 * 119.99975 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99923 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99647 * 179.97438 * 16 14 13 18 18 C 1.50705 * 109.46849 * 179.97438 * 17 16 14 19 19 H 1.07993 * 119.99828 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00087 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99815 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00149 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46780 * 60.00729 * 22 20 18 24 24 H 1.48499 * 109.46959 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47260 * 300.00461 * 22 20 18 26 26 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 27 27 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 28 28 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09007 * 110.32077 * 336.26836 * 7 5 3 30 30 H 1.08999 * 110.32667 * 98.46616 * 7 5 3 31 31 H 0.96702 * 113.99794 * 179.97438 * 10 8 7 32 32 H 1.09003 * 110.41490 * 142.62749 * 11 8 7 33 33 H 1.08998 * 110.41531 * 264.95689 * 11 8 7 34 34 H 1.09002 * 109.46279 * 289.99342 * 13 12 5 35 35 H 1.08996 * 109.47239 * 49.98789 * 13 12 5 36 36 H 0.96990 * 120.00096 * 359.97438 * 16 14 13 37 37 H 1.08995 * 109.47475 * 299.99684 * 17 16 14 38 38 H 1.09003 * 109.47253 * 60.00031 * 17 16 14 39 39 H 0.97000 * 119.99849 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9722 0.7739 -0.8794 7 6 4.1388 0.6480 1.2889 8 6 5.3435 1.5350 1.6651 9 1 6.2619 0.9480 1.6609 10 8 5.1398 2.1305 2.9481 11 6 5.3980 2.6228 0.5711 12 7 4.0110 2.6918 0.0396 13 6 3.9879 3.2890 -1.3023 14 6 4.2038 4.7765 -1.1940 15 8 4.3610 5.2888 -0.1059 16 7 4.2223 5.5375 -2.3062 17 6 4.4316 6.9836 -2.2007 18 6 4.4093 7.5961 -3.5775 19 1 4.2542 6.9708 -4.4442 20 6 4.5858 8.9550 -3.7305 21 7 4.7741 9.7166 -2.6750 22 14 4.5574 9.7143 -5.4370 23 1 3.2428 9.4493 -6.0748 24 1 4.7697 11.1801 -5.3301 25 1 5.6376 9.1170 -6.2626 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.3921 0.6669 2.0828 30 1 4.4658 -0.3744 1.1000 31 1 5.8663 2.6994 3.2374 32 1 5.6882 3.5811 1.0018 33 1 6.0937 2.3349 -0.2170 34 1 4.7801 2.8501 -1.9089 35 1 3.0226 3.0950 -1.7698 36 1 4.0970 5.1278 -3.1763 37 1 3.6390 7.4223 -1.5947 38 1 5.3967 7.1779 -1.7326 39 1 4.8979 10.6726 -2.7826 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163821681.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:34 Heat of formation + Delta-G solvation = -187.464366 kcal Electronic energy + Delta-G solvation = -23043.929763 eV Core-core repulsion = 19371.844342 eV Total energy + Delta-G solvation = -3672.085421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.85983 -40.65492 -39.55704 -37.54040 -36.68475 -36.07837 -34.35956 -32.85970 -30.55044 -29.67572 -28.29772 -27.35451 -24.70472 -23.89297 -22.16072 -21.45279 -21.32900 -19.14145 -18.65601 -18.24920 -17.87400 -17.59223 -17.35284 -17.01261 -16.75189 -16.31713 -15.81018 -15.68931 -15.04839 -14.66503 -14.57837 -14.22906 -14.09083 -14.00220 -13.86454 -13.57023 -13.16119 -12.96616 -12.83903 -12.73629 -12.69091 -12.48404 -12.24608 -12.08477 -11.79801 -11.52492 -11.37522 -10.90391 -10.79944 -10.74903 -9.83780 -9.53202 -8.29892 -6.47212 1.14200 1.41864 1.46628 1.53513 1.55071 1.77598 2.24638 2.43843 3.03621 3.04617 3.19175 3.46185 3.62061 3.88824 3.93165 4.02982 4.16025 4.23041 4.29000 4.32419 4.32916 4.49450 4.53723 4.71240 4.85847 4.92139 5.03449 5.08919 5.22416 5.31401 5.47356 5.60922 5.67418 5.76115 5.83837 6.63600 6.75713 6.90449 6.92674 7.22412 7.51385 8.82300 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.003602 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.925502 B = 7771.596606 C = 8672.075682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.465 3.535 4 O -0.527 6.527 5 C 0.071 3.929 6 H 0.135 0.865 7 C -0.099 4.099 8 C 0.105 3.895 9 H 0.113 0.887 10 O -0.583 6.583 11 C 0.003 3.997 12 N -0.506 5.506 13 C 0.040 3.960 14 C 0.497 3.503 15 O -0.583 6.583 16 N -0.710 5.710 17 C 0.270 3.730 18 C -0.558 4.558 19 H 0.085 0.915 20 C 0.003 3.997 21 N -0.932 5.932 22 Si 0.987 3.013 23 H -0.263 1.263 24 H -0.285 1.285 25 H -0.259 1.259 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.139 0.861 29 H 0.068 0.932 30 H 0.138 0.862 31 H 0.393 0.607 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.407 0.593 37 H -0.020 1.020 38 H -0.011 1.011 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.039 -26.405 2.305 26.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.307 3.693 4 O -0.415 6.415 5 C -0.038 4.038 6 H 0.152 0.848 7 C -0.137 4.137 8 C 0.046 3.954 9 H 0.130 0.870 10 O -0.391 6.391 11 C -0.124 4.124 12 N -0.232 5.232 13 C -0.091 4.091 14 C 0.284 3.716 15 O -0.463 6.463 16 N -0.361 5.361 17 C 0.147 3.853 18 C -0.595 4.595 19 H 0.103 0.897 20 C -0.197 4.197 21 N -0.570 5.570 22 Si 0.810 3.190 23 H -0.188 1.188 24 H -0.211 1.211 25 H -0.183 1.183 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.157 0.843 29 H 0.087 0.913 30 H 0.156 0.844 31 H 0.243 0.757 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.243 0.757 37 H -0.002 1.002 38 H 0.007 0.993 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.044 -25.554 3.429 25.804 hybrid contribution 0.396 1.194 -1.234 1.762 sum -0.647 -24.360 2.195 24.467 Atomic orbital electron populations 1.23532 0.74989 1.05791 1.02119 1.86466 1.24663 1.32061 1.83902 1.23884 0.92273 0.81346 0.71769 1.90733 1.67590 1.37850 1.45326 1.22420 0.87283 0.90662 1.03462 0.84777 1.22374 0.97204 1.00280 0.93803 1.22707 0.98949 0.91901 0.81824 0.86961 1.86508 1.50167 1.67604 1.34850 1.24064 0.88048 1.01004 0.99284 1.64582 1.22480 1.14439 1.21658 1.22120 1.04776 0.90458 0.91725 1.21181 0.76247 0.90314 0.83897 1.90632 1.51054 1.75800 1.28846 1.46160 1.71853 1.08973 1.09153 1.18492 0.93524 0.76524 0.96785 1.21597 1.51610 0.93854 0.92487 0.89736 1.26108 0.93793 0.97530 1.02258 1.70145 1.48619 1.06143 1.32133 0.85177 0.79461 0.76788 0.77598 1.18806 1.21059 1.18333 0.92835 0.92282 0.84323 0.91322 0.84369 0.75679 0.91309 0.90032 0.87413 0.87640 0.75718 1.00228 0.99286 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -6.98 10.56 -51.35 -0.54 -7.52 16 3 C 0.46 11.90 6.92 71.23 0.49 12.39 16 4 O -0.53 -18.80 15.58 21.94 0.34 -18.46 16 5 C 0.07 1.43 2.78 44.32 0.12 1.55 16 6 H 0.14 1.60 7.99 -2.39 -0.02 1.58 16 7 C -0.10 -1.61 6.34 31.49 0.20 -1.41 16 8 C 0.11 1.86 4.42 31.49 0.14 2.00 16 9 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 10 O -0.58 -13.51 13.26 -148.98 -1.98 -15.48 16 11 C 0.00 0.07 5.67 86.42 0.49 0.56 16 12 N -0.51 -14.70 4.25 -865.21 -3.68 -18.38 16 13 C 0.04 1.17 5.12 85.55 0.44 1.61 16 14 C 0.50 21.22 7.68 87.65 0.67 21.90 16 15 O -0.58 -30.86 15.24 -3.04 -0.05 -30.91 16 16 N -0.71 -31.43 5.55 -466.79 -2.59 -34.02 16 17 C 0.27 15.39 5.43 85.63 0.46 15.85 16 18 C -0.56 -31.08 9.28 25.60 0.24 -30.84 16 19 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 20 C 0.00 0.15 5.46 84.65 0.46 0.61 16 21 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 22 Si 0.99 42.89 29.54 68.60 2.03 44.91 16 23 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 26 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 27 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 28 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.46 7.69 -2.38 -0.02 1.45 16 30 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.39 6.43 9.12 -74.06 -0.68 5.76 16 32 H 0.07 2.18 7.19 -2.39 -0.02 2.17 16 33 H 0.08 1.44 7.76 -2.39 -0.02 1.42 16 34 H 0.11 2.17 7.77 -2.39 -0.02 2.15 16 35 H 0.11 2.98 7.35 -2.39 -0.02 2.96 16 36 H 0.41 14.72 8.32 -92.72 -0.77 13.95 16 37 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 38 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -87.87 334.31 -1.62 -89.50 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -0.36 Total: 21.69 kcal Atomic # 6 Polarization: 20.96 SS G_CDS: 4.92 Total: 25.87 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -5.98 Total: -109.59 kcal Atomic # 8 Polarization: -70.16 SS G_CDS: -2.22 Total: -72.38 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -87.87 -1.62 -89.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163821681.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.969 kcal (2) G-P(sol) polarization free energy of solvation -87.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds