Wall clock time and date at job start Tue Mar 31 2020 03:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34222 * 117.00022 * 2 1 4 4 O 1.20830 * 120.00507 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00133 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47431 * 179.97438 * 5 3 2 7 7 C 1.36936 * 120.00095 * 270.00388 * 6 5 3 8 8 H 1.08001 * 120.00324 * 188.15386 * 7 6 5 9 9 C 1.38811 * 120.00144 * 8.15608 * 7 6 5 10 10 N 1.31615 * 120.00143 * 26.15350 * 9 7 6 11 11 Si 1.86798 * 119.99908 * 206.16061 * 9 7 6 12 12 H 1.48494 * 109.47421 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47102 * 120.00077 * 11 9 7 14 14 H 1.48501 * 109.47170 * 239.99350 * 11 9 7 15 15 C 1.46495 * 119.99924 * 90.00487 * 6 5 3 16 16 C 1.50698 * 109.47192 * 89.69150 * 15 6 5 17 17 O 1.21273 * 120.00250 * 0.02562 * 16 15 6 18 18 N 1.34785 * 119.99755 * 180.02562 * 16 15 6 19 19 C 1.47162 * 120.94241 * 359.97438 * 18 16 15 20 20 C 1.53295 * 108.37201 * 230.47613 * 19 18 16 21 21 O 1.42967 * 109.26435 * 307.77014 * 20 19 18 22 22 C 1.42958 * 114.16191 * 62.56284 * 21 20 19 23 23 C 1.47155 * 120.97633 * 180.02562 * 18 16 15 24 24 H 1.08999 * 109.46490 * 59.99944 * 1 2 3 25 25 H 1.08991 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47043 * 300.00391 * 1 2 3 27 27 H 1.09008 * 109.46748 * 60.00205 * 5 3 2 28 28 H 1.08996 * 109.47717 * 300.00459 * 5 3 2 29 29 H 0.97006 * 120.00344 * 179.97438 * 10 9 7 30 30 H 1.08996 * 109.47035 * 329.69017 * 15 6 5 31 31 H 1.09000 * 109.47142 * 209.69205 * 15 6 5 32 32 H 1.08996 * 109.64593 * 110.77932 * 19 18 16 33 33 H 1.08997 * 109.73067 * 350.21862 * 19 18 16 34 34 H 1.09006 * 109.51328 * 187.82862 * 20 19 18 35 35 H 1.08994 * 109.51640 * 67.72796 * 20 19 18 36 36 H 1.09002 * 109.51827 * 57.33992 * 22 21 20 37 37 H 1.08996 * 109.51187 * 177.44312 * 22 21 20 38 38 H 1.08991 * 109.68473 * 9.75299 * 23 18 16 39 39 H 1.09006 * 109.67826 * 249.19655 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.1764 3.3355 -1.1864 8 1 4.6075 4.3257 -1.1916 9 6 3.8195 2.7277 -2.3822 10 7 2.8711 1.8153 -2.3993 11 14 4.6854 3.2046 -3.9672 12 1 5.7047 4.2456 -3.6805 13 1 5.3477 2.0093 -4.5484 14 1 3.6915 3.7383 -4.9330 15 6 4.1891 3.3829 1.2682 16 6 5.6207 3.2147 1.7076 17 8 6.3921 2.5714 1.0281 18 7 6.0439 3.7795 2.8560 19 6 5.1258 4.5649 3.6962 20 6 5.7914 5.9088 4.0136 21 8 7.0973 5.6742 4.5462 22 6 7.9893 5.0192 3.6412 23 6 7.4371 3.6296 3.3053 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.9565 0.7805 -0.8893 28 1 3.9559 0.7809 0.8907 29 1 2.6214 1.3908 -3.2350 30 1 3.5251 2.9678 2.0264 31 1 3.9717 4.4427 1.1357 32 1 4.9255 4.0265 4.6225 33 1 4.1918 4.7353 3.1608 34 1 5.1911 6.4484 4.7462 35 1 5.8710 6.5002 3.1015 36 1 8.0770 5.6065 2.7272 37 1 8.9705 4.9195 4.1054 38 1 8.0328 3.1802 2.5108 39 1 7.4707 2.9972 4.1925 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331110863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:24 Heat of formation + Delta-G solvation = -117.694156 kcal Electronic energy + Delta-G solvation = -23914.041322 eV Core-core repulsion = 20244.981365 eV Total energy + Delta-G solvation = -3669.059957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.97394 -38.96188 -37.99670 -35.77917 -34.53422 -34.36634 -31.81069 -31.18923 -28.77297 -27.85334 -26.52308 -25.92743 -24.08139 -22.65647 -21.50065 -19.86932 -18.83855 -17.03752 -17.00655 -16.40250 -16.20462 -15.74886 -15.47680 -15.19974 -15.11099 -14.97785 -14.71049 -14.54157 -13.67660 -13.48716 -13.18883 -12.73258 -12.52597 -12.36759 -12.18697 -11.77606 -11.45818 -11.42791 -11.13084 -11.03308 -10.80068 -10.74315 -10.49928 -10.17375 -10.13542 -9.96088 -9.63443 -9.50638 -9.03941 -8.49457 -8.32892 -7.17897 -5.96321 -3.20790 3.11426 3.24530 3.38629 3.46297 3.49948 3.72906 3.84213 4.02584 4.46851 4.71435 4.87293 4.97384 5.07452 5.16951 5.21032 5.31270 5.38165 5.49622 5.54254 5.70217 5.79165 5.81131 5.84796 5.91499 5.97204 6.08217 6.12832 6.28213 6.64119 6.69638 6.98326 7.07374 7.60197 7.72253 7.75586 8.08106 8.77090 8.96814 9.35614 9.65704 10.04037 11.15831 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.016209 B = 0.005506 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.007472 B = 5084.051535 C = 6216.633455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.381 6.381 3 C 0.468 3.532 4 O -0.509 6.509 5 C 0.192 3.808 6 N -0.545 5.545 7 C -0.248 4.248 8 H 0.080 0.920 9 C 0.005 3.995 10 N -0.901 5.901 11 Si 0.908 3.092 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.293 1.293 15 C 0.136 3.864 16 C 0.484 3.516 17 O -0.516 6.516 18 N -0.630 5.630 19 C 0.076 3.924 20 C 0.046 3.954 21 O -0.384 6.384 22 C 0.049 3.951 23 C 0.077 3.923 24 H 0.053 0.947 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.117 0.883 28 H 0.052 0.948 29 H 0.258 0.742 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.058 2.629 12.797 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.299 6.299 3 C 0.309 3.691 4 O -0.394 6.394 5 C 0.062 3.938 6 N -0.262 5.262 7 C -0.376 4.376 8 H 0.098 0.902 9 C -0.193 4.193 10 N -0.546 5.546 11 Si 0.737 3.263 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.220 1.220 15 C 0.004 3.996 16 C 0.271 3.729 17 O -0.388 6.388 18 N -0.370 5.370 19 C -0.048 4.048 20 C -0.031 4.031 21 O -0.302 6.302 22 C -0.029 4.029 23 C -0.047 4.047 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.134 0.866 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.220 2.545 12.378 13.041 hybrid contribution -0.066 0.255 -1.189 1.218 sum 3.154 2.801 11.189 11.957 Atomic orbital electron populations 1.22856 0.79797 1.01325 1.01244 1.86542 1.20974 1.36645 1.85716 1.25433 0.93361 0.80210 0.70129 1.90452 1.66695 1.36437 1.45803 1.20353 0.85320 0.86100 1.01984 1.43513 1.74229 1.07661 1.00820 1.19188 1.34892 1.00977 0.82575 0.90226 1.24684 0.97324 0.99281 0.98008 1.69862 1.27063 1.31147 1.26494 0.86141 0.79383 0.77837 0.82917 1.20303 1.21310 1.21988 1.20684 0.90056 0.98879 0.89942 1.23157 0.93240 0.77912 0.78594 1.90639 1.56519 1.39184 1.52494 1.48535 1.10239 1.54475 1.23715 1.22344 0.93987 0.92459 0.95964 1.22993 0.84370 0.95934 0.99840 1.87922 1.22460 1.79028 1.40838 1.22969 0.93292 0.92632 0.93998 1.22128 0.84425 0.97248 1.00890 0.92809 0.90136 0.93656 0.86577 0.92994 0.93157 0.91192 0.89943 0.90955 0.88444 0.87863 0.92493 0.92684 0.88089 0.88351 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.82 16 2 O -0.38 -8.36 10.57 -39.23 -0.41 -8.78 16 3 C 0.47 11.49 6.03 36.01 0.22 11.71 16 4 O -0.51 -13.76 15.90 -18.75 -0.30 -14.06 16 5 C 0.19 4.64 5.54 -5.19 -0.03 4.61 16 6 N -0.55 -13.49 1.51 -175.99 -0.27 -13.75 16 7 C -0.25 -6.78 9.69 -15.06 -0.15 -6.92 16 8 H 0.08 2.15 7.95 -52.49 -0.42 1.73 16 9 C 0.00 0.13 4.87 -17.43 -0.08 0.04 16 10 N -0.90 -25.68 9.03 55.49 0.50 -25.18 16 11 Si 0.91 22.16 29.63 -169.99 -5.04 17.13 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 C 0.14 2.69 4.52 -5.20 -0.02 2.67 16 16 C 0.48 9.24 7.78 -10.98 -0.09 9.15 16 17 O -0.52 -11.94 15.90 5.56 0.09 -11.85 16 18 N -0.63 -9.31 3.02 -172.30 -0.52 -9.83 16 19 C 0.08 0.86 6.54 -3.53 -0.02 0.83 16 20 C 0.05 0.47 6.98 37.31 0.26 0.73 16 21 O -0.38 -4.55 10.74 -35.23 -0.38 -4.93 16 22 C 0.05 0.54 6.98 37.29 0.26 0.80 16 23 C 0.08 0.99 6.64 -3.55 -0.02 0.97 16 24 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 27 H 0.12 3.08 6.31 -51.92 -0.33 2.75 16 28 H 0.05 1.12 8.07 -51.93 -0.42 0.70 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.07 1.25 7.95 -51.93 -0.41 0.84 16 31 H 0.08 1.54 7.55 -51.93 -0.39 1.15 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 1.03 6.05 -51.93 -0.31 0.72 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.10 1.42 7.08 -51.93 -0.37 1.06 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -34.73 326.28 -5.61 -40.34 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.59 Total: -0.42 kcal Atomic # 6 Polarization: 25.02 SS G_CDS: 1.39 Total: 26.41 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.28 Total: -48.77 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -1.00 Total: -39.61 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.04 Total: 17.13 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.73 -5.61 -40.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331110863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.352 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds