Wall clock time and date at job start Tue Mar 31 2020 03:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34222 * 117.00022 * 2 1 4 4 O 1.20830 * 120.00507 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00133 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47431 * 179.97438 * 5 3 2 7 7 C 1.36936 * 120.00095 * 270.00388 * 6 5 3 8 8 H 1.08001 * 120.00324 * 188.15386 * 7 6 5 9 9 C 1.38811 * 120.00144 * 8.15608 * 7 6 5 10 10 N 1.31615 * 120.00143 * 26.15350 * 9 7 6 11 11 Si 1.86798 * 119.99908 * 206.16061 * 9 7 6 12 12 H 1.48494 * 109.47421 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47102 * 120.00077 * 11 9 7 14 14 H 1.48501 * 109.47170 * 239.99350 * 11 9 7 15 15 C 1.46495 * 119.99924 * 90.00487 * 6 5 3 16 16 C 1.50698 * 109.47192 * 89.69150 * 15 6 5 17 17 O 1.21273 * 120.00250 * 0.02562 * 16 15 6 18 18 N 1.34785 * 119.99755 * 180.02562 * 16 15 6 19 19 C 1.47162 * 120.94241 * 359.97438 * 18 16 15 20 20 C 1.53295 * 108.37201 * 230.47613 * 19 18 16 21 21 O 1.42967 * 109.26435 * 307.77014 * 20 19 18 22 22 C 1.42958 * 114.16191 * 62.56284 * 21 20 19 23 23 C 1.47155 * 120.97633 * 180.02562 * 18 16 15 24 24 H 1.08999 * 109.46490 * 59.99944 * 1 2 3 25 25 H 1.08991 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47043 * 300.00391 * 1 2 3 27 27 H 1.09008 * 109.46748 * 60.00205 * 5 3 2 28 28 H 1.08996 * 109.47717 * 300.00459 * 5 3 2 29 29 H 0.97006 * 120.00344 * 179.97438 * 10 9 7 30 30 H 1.08996 * 109.47035 * 329.69017 * 15 6 5 31 31 H 1.09000 * 109.47142 * 209.69205 * 15 6 5 32 32 H 1.08996 * 109.64593 * 110.77932 * 19 18 16 33 33 H 1.08997 * 109.73067 * 350.21862 * 19 18 16 34 34 H 1.09006 * 109.51328 * 187.82862 * 20 19 18 35 35 H 1.08994 * 109.51640 * 67.72796 * 20 19 18 36 36 H 1.09002 * 109.51827 * 57.33992 * 22 21 20 37 37 H 1.08996 * 109.51187 * 177.44312 * 22 21 20 38 38 H 1.08991 * 109.68473 * 9.75299 * 23 18 16 39 39 H 1.09006 * 109.67826 * 249.19655 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.1764 3.3355 -1.1864 8 1 4.6075 4.3257 -1.1916 9 6 3.8195 2.7277 -2.3822 10 7 2.8711 1.8153 -2.3993 11 14 4.6854 3.2046 -3.9672 12 1 5.7047 4.2456 -3.6805 13 1 5.3477 2.0093 -4.5484 14 1 3.6915 3.7383 -4.9330 15 6 4.1891 3.3829 1.2682 16 6 5.6207 3.2147 1.7076 17 8 6.3921 2.5714 1.0281 18 7 6.0439 3.7795 2.8560 19 6 5.1258 4.5649 3.6962 20 6 5.7914 5.9088 4.0136 21 8 7.0973 5.6742 4.5462 22 6 7.9893 5.0192 3.6412 23 6 7.4371 3.6296 3.3053 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.9565 0.7805 -0.8893 28 1 3.9559 0.7809 0.8907 29 1 2.6214 1.3908 -3.2350 30 1 3.5251 2.9678 2.0264 31 1 3.9717 4.4427 1.1357 32 1 4.9255 4.0265 4.6225 33 1 4.1918 4.7353 3.1608 34 1 5.1911 6.4484 4.7462 35 1 5.8710 6.5002 3.1015 36 1 8.0770 5.6065 2.7272 37 1 8.9705 4.9195 4.1054 38 1 8.0328 3.1802 2.5108 39 1 7.4707 2.9972 4.1925 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331110863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:23 Heat of formation + Delta-G solvation = -141.560762 kcal Electronic energy + Delta-G solvation = -23915.076256 eV Core-core repulsion = 20244.981365 eV Total energy + Delta-G solvation = -3670.094891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.23607 -40.74903 -39.25581 -37.55943 -36.37504 -35.64476 -33.51046 -32.42101 -30.40929 -29.28190 -27.92193 -27.67461 -25.15654 -24.22402 -22.79415 -21.67366 -20.13847 -18.94812 -18.44221 -17.94515 -17.59484 -17.19608 -16.91182 -16.64404 -16.57939 -16.36449 -15.97719 -15.85418 -15.44012 -15.05456 -14.64833 -14.20125 -14.02593 -13.91895 -13.42342 -13.38708 -12.92692 -12.75192 -12.69841 -12.59982 -12.39717 -12.28424 -12.10674 -11.94971 -11.69198 -11.38818 -11.31074 -11.16191 -10.78789 -10.46758 -9.50185 -9.10951 -8.03188 -5.27528 1.42168 1.46871 1.56181 1.75777 1.87148 1.99190 2.32702 2.52133 2.89978 3.18691 3.45080 3.74235 3.83397 4.07937 4.15754 4.27171 4.31333 4.36532 4.42691 4.45646 4.51005 4.53492 4.58600 4.68737 4.70490 4.79900 4.88232 4.92582 4.98209 5.10893 5.51856 5.57234 5.91312 6.08183 6.12142 6.40859 6.93318 7.32192 7.46036 7.71105 8.04217 9.07387 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.016209 B = 0.005506 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.007472 B = 5084.051535 C = 6216.633455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.386 6.386 3 C 0.474 3.526 4 O -0.539 6.539 5 C 0.194 3.806 6 N -0.563 5.563 7 C -0.252 4.252 8 H 0.076 0.924 9 C -0.045 4.045 10 N -0.923 5.923 11 Si 0.964 3.036 12 H -0.274 1.274 13 H -0.289 1.289 14 H -0.294 1.294 15 C 0.135 3.865 16 C 0.488 3.512 17 O -0.566 6.566 18 N -0.624 5.624 19 C 0.070 3.930 20 C 0.046 3.954 21 O -0.391 6.391 22 C 0.055 3.945 23 C 0.074 3.926 24 H 0.035 0.965 25 H 0.125 0.875 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.252 0.748 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.135 0.865 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.128 0.872 38 H 0.079 0.921 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.100 3.177 14.678 15.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.303 6.303 3 C 0.316 3.684 4 O -0.427 6.427 5 C 0.064 3.936 6 N -0.281 5.281 7 C -0.382 4.382 8 H 0.093 0.907 9 C -0.239 4.239 10 N -0.570 5.570 11 Si 0.793 3.207 12 H -0.199 1.199 13 H -0.216 1.216 14 H -0.222 1.222 15 C 0.005 3.995 16 C 0.275 3.725 17 O -0.443 6.443 18 N -0.361 5.361 19 C -0.053 4.053 20 C -0.031 4.031 21 O -0.310 6.310 22 C -0.023 4.023 23 C -0.049 4.049 24 H 0.054 0.946 25 H 0.143 0.857 26 H 0.075 0.925 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.152 0.848 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.146 0.854 38 H 0.097 0.903 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.268 3.123 14.336 15.032 hybrid contribution -0.113 0.089 -1.625 1.631 sum 3.155 3.211 12.711 13.485 Atomic orbital electron populations 1.23189 0.77180 1.04227 1.00952 1.86491 1.23485 1.35171 1.85147 1.25348 0.93476 0.80362 0.69242 1.90422 1.67391 1.37510 1.47373 1.20218 0.85465 0.86213 1.01675 1.43602 1.74848 1.07907 1.01730 1.19387 1.33900 1.00909 0.83967 0.90652 1.25321 0.98102 1.00065 1.00455 1.69980 1.28178 1.32388 1.26441 0.85271 0.78260 0.77320 0.79887 1.19891 1.21594 1.22175 1.20855 0.90953 0.99061 0.88597 1.22703 0.92456 0.77825 0.79472 1.90622 1.57443 1.41761 1.54496 1.48469 1.11686 1.53324 1.22604 1.22654 0.93649 0.92871 0.96087 1.23138 0.84060 0.95240 1.00646 1.87925 1.23061 1.78883 1.41093 1.22986 0.94313 0.90948 0.94004 1.22283 0.83010 0.98913 1.00693 0.94581 0.85668 0.92489 0.89370 0.90654 0.93863 0.89107 0.89052 0.88980 0.87793 0.84774 0.93072 0.93550 0.85402 0.90261 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 10.56 113.37 1.20 2.50 16 2 O -0.39 -16.65 10.57 -51.34 -0.54 -17.19 16 3 C 0.47 23.27 6.03 71.24 0.43 23.70 16 4 O -0.54 -29.22 15.90 21.95 0.35 -28.87 16 5 C 0.19 9.46 5.54 85.63 0.47 9.94 16 6 N -0.56 -28.03 1.51 -710.71 -1.07 -29.10 16 7 C -0.25 -13.97 9.69 84.03 0.81 -13.16 16 8 H 0.08 4.12 7.95 -2.91 -0.02 4.09 16 9 C -0.04 -2.51 4.87 84.86 0.41 -2.10 16 10 N -0.92 -53.71 9.03 21.65 0.20 -53.51 16 11 Si 0.96 46.44 29.63 68.60 2.03 48.47 16 12 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 13 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 14 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 15 C 0.14 5.25 4.52 85.63 0.39 5.64 16 16 C 0.49 18.37 7.78 87.66 0.68 19.05 16 17 O -0.57 -26.54 15.90 -3.01 -0.05 -26.59 16 18 N -0.62 -17.44 3.02 -817.41 -2.47 -19.91 16 19 C 0.07 1.37 6.54 86.35 0.56 1.94 16 20 C 0.05 0.80 6.98 72.08 0.50 1.31 16 21 O -0.39 -8.08 10.74 -148.98 -1.60 -9.68 16 22 C 0.05 1.09 6.98 72.07 0.50 1.59 16 23 C 0.07 1.80 6.64 86.34 0.57 2.38 16 24 H 0.04 1.34 8.13 -2.39 -0.02 1.32 16 25 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 26 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 27 H 0.09 4.82 6.31 -2.38 -0.02 4.80 16 28 H 0.08 3.23 8.07 -2.39 -0.02 3.22 16 29 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 30 H 0.09 3.10 7.95 -2.39 -0.02 3.08 16 31 H 0.09 3.34 7.55 -2.39 -0.02 3.32 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 1.93 6.05 -2.39 -0.01 1.91 16 34 H 0.13 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 2.28 7.08 -2.39 -0.02 2.26 16 39 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -75.84 326.28 4.44 -71.40 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.05 Total: 12.19 kcal Atomic # 6 Polarization: 46.25 SS G_CDS: 6.54 Total: 52.79 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -3.35 Total: -102.52 kcal Atomic # 8 Polarization: -80.49 SS G_CDS: -1.84 Total: -82.34 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -75.84 4.44 -71.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331110863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.158 kcal (2) G-P(sol) polarization free energy of solvation -75.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds