Wall clock time and date at job start Tue Mar 31 2020 02:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 117.00672 * 2 1 4 4 O 1.20825 * 119.99409 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00209 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.50620 * 304.91329 * 5 3 2 7 7 C 1.53090 * 109.50821 * 65.00214 * 5 3 2 8 8 N 1.47010 * 109.26039 * 176.82557 * 7 5 3 9 9 C 1.46901 * 111.00308 * 177.60479 * 8 7 5 10 10 C 1.50703 * 109.47217 * 293.64063 * 9 8 7 11 11 O 1.21291 * 119.99824 * 353.71909 * 10 9 8 12 12 N 1.34781 * 119.99986 * 173.44528 * 10 9 8 13 13 C 1.37097 * 119.99427 * 180.27474 * 12 10 9 14 14 H 1.07995 * 120.00998 * 359.97438 * 13 12 10 15 15 C 1.38955 * 119.99313 * 180.02562 * 13 12 10 16 16 N 1.31415 * 119.99830 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00147 * 359.97438 * 15 13 12 18 18 H 1.48508 * 109.46680 * 90.00291 * 17 15 13 19 19 H 1.48498 * 109.46921 * 210.00107 * 17 15 13 20 20 H 1.48500 * 109.47166 * 330.00371 * 17 15 13 21 21 C 1.47013 * 110.75589 * 301.37998 * 8 7 5 22 22 C 1.53103 * 109.25413 * 58.61575 * 21 8 7 23 23 H 1.08998 * 109.54359 * 183.19881 * 22 21 8 24 24 C 1.52996 * 109.50633 * 63.08570 * 22 21 8 25 25 O 1.43020 * 109.53916 * 184.80635 * 5 3 2 26 26 H 1.09001 * 109.47130 * 59.99571 * 1 2 3 27 27 H 1.08995 * 109.47369 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46809 * 300.00140 * 1 2 3 29 29 H 1.09000 * 109.50807 * 56.88982 * 7 5 3 30 30 H 1.09005 * 109.54342 * 296.78484 * 7 5 3 31 31 H 1.09003 * 109.47577 * 173.63559 * 9 8 7 32 32 H 1.09004 * 109.46891 * 53.63569 * 9 8 7 33 33 H 0.96993 * 119.99637 * 0.27346 * 12 10 9 34 34 H 0.96993 * 120.00114 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.51168 * 178.54640 * 21 8 7 36 36 H 1.08995 * 109.50841 * 298.68875 * 21 8 7 37 37 H 1.09002 * 109.47765 * 300.21725 * 24 22 21 38 38 H 1.09003 * 109.47087 * 60.22012 * 24 22 21 39 39 H 1.08998 * 109.47125 * 180.21802 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2746 -0.0006 6 1 3.9609 0.7062 0.8417 7 6 4.1083 0.6926 -1.3088 8 7 5.5706 0.8413 -1.3367 9 6 6.1375 0.2431 -2.5527 10 6 5.9362 -1.2500 -2.5190 11 8 5.4796 -1.7781 -1.5271 12 7 6.2584 -1.9979 -3.5930 13 6 6.0700 -3.3555 -3.5642 14 1 5.6638 -3.8259 -2.6810 15 6 6.4027 -4.1266 -4.6713 16 7 6.2226 -5.4281 -4.6436 17 14 7.1060 -3.3133 -6.1988 18 1 8.5868 -3.2662 -6.0972 19 1 6.7168 -4.0953 -7.3997 20 1 6.5735 -1.9318 -6.3137 21 6 5.9528 2.2559 -1.2180 22 6 5.3924 2.8223 0.0894 23 1 5.6244 3.8853 0.1553 24 6 6.0207 2.0876 1.2753 25 8 3.9739 2.6409 0.1125 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 3.6720 1.2265 -2.1530 30 1 3.8485 -0.3641 -1.3730 31 1 7.2035 0.4650 -2.6039 32 1 5.6377 0.6574 -3.4284 33 1 6.6236 -1.5755 -4.3861 34 1 6.4545 -5.9663 -5.4165 35 1 7.0395 2.3404 -1.2149 36 1 5.5459 2.8148 -2.0606 37 1 5.7896 1.0245 1.2080 38 1 7.1017 2.2263 1.2572 39 1 5.6185 2.4887 2.2056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338370438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:30 Heat of formation + Delta-G solvation = -166.802352 kcal Electronic energy + Delta-G solvation = -23644.686033 eV Core-core repulsion = 19973.496585 eV Total energy + Delta-G solvation = -3671.189449 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -42.00499 -40.85772 -39.90954 -37.67785 -36.71130 -35.79381 -33.73592 -33.63429 -31.26023 -29.20621 -28.46036 -26.77137 -25.96070 -24.37802 -22.54671 -21.23831 -20.61107 -20.23225 -19.08270 -18.26954 -17.91237 -17.66338 -17.05160 -16.76976 -16.62039 -16.42150 -15.70663 -15.56098 -15.31001 -15.13407 -14.81375 -14.43630 -14.36178 -14.14279 -13.90052 -13.41484 -13.14053 -12.94703 -12.93951 -12.76814 -12.59456 -12.38661 -12.30508 -11.97818 -11.91609 -11.79473 -11.46020 -11.30254 -10.91550 -10.31266 -10.20235 -9.36091 -8.38383 -5.98591 0.87922 1.25518 1.31609 1.36967 1.45525 1.98697 2.24852 2.43737 2.90064 3.13271 3.18900 3.56574 3.64895 3.80037 3.86272 4.08894 4.13338 4.21682 4.24518 4.27926 4.38816 4.39594 4.51585 4.63623 4.65947 4.70500 4.79221 4.92368 5.07201 5.15624 5.43084 5.54196 5.73003 5.88917 5.96107 6.03001 6.53658 6.62489 6.91950 7.43269 8.00133 8.79205 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.018041 B = 0.004631 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.612715 B = 6044.349884 C = 7042.212254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.474 3.526 4 O -0.515 6.515 5 C 0.111 3.889 6 H 0.110 0.890 7 C 0.039 3.961 8 N -0.522 5.522 9 C 0.054 3.946 10 C 0.451 3.549 11 O -0.600 6.600 12 N -0.593 5.593 13 C -0.324 4.324 14 H 0.057 0.943 15 C -0.015 4.015 16 N -0.936 5.936 17 Si 0.962 3.038 18 H -0.256 1.256 19 H -0.278 1.278 20 H -0.232 1.232 21 C 0.019 3.981 22 C 0.088 3.912 23 H 0.144 0.856 24 C -0.176 4.176 25 O -0.373 6.373 26 H 0.066 0.934 27 H 0.130 0.870 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.077 0.923 33 H 0.389 0.611 34 H 0.278 0.722 35 H 0.120 0.880 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.452 18.734 4.417 19.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.316 3.684 4 O -0.403 6.403 5 C 0.052 3.948 6 H 0.128 0.872 7 C -0.090 4.090 8 N -0.248 5.248 9 C -0.077 4.077 10 C 0.238 3.762 11 O -0.484 6.484 12 N -0.235 5.235 13 C -0.453 4.453 14 H 0.076 0.924 15 C -0.213 4.213 16 N -0.576 5.576 17 Si 0.783 3.217 18 H -0.181 1.181 19 H -0.203 1.203 20 H -0.156 1.156 21 C -0.108 4.108 22 C 0.031 3.969 23 H 0.161 0.839 24 C -0.233 4.233 25 O -0.293 6.293 26 H 0.084 0.916 27 H 0.148 0.852 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.151 0.849 32 H 0.095 0.905 33 H 0.224 0.776 34 H 0.087 0.913 35 H 0.138 0.862 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.922 18.379 5.420 19.257 hybrid contribution -0.227 -0.253 -1.534 1.571 sum -2.148 18.126 3.886 18.662 Atomic orbital electron populations 1.23649 0.73850 1.05950 1.03059 1.86553 1.25760 1.32009 1.83436 1.23299 0.91380 0.81606 0.72098 1.90632 1.67301 1.36963 1.45450 1.21240 0.86871 0.86242 1.00445 0.87247 1.22520 0.89188 1.02280 0.95000 1.61696 1.08429 1.16520 1.38110 1.21897 1.03583 0.89982 0.92193 1.20828 0.82125 0.90030 0.83207 1.90544 1.48898 1.74833 1.34101 1.42047 1.59477 1.06569 1.15413 1.18994 1.41888 0.82272 1.02159 0.92450 1.26073 0.97526 0.95754 1.01963 1.69803 1.48741 1.06480 1.32620 0.85401 0.79589 0.79770 0.76978 1.18078 1.20342 1.15564 1.23043 1.03508 0.86237 0.98011 1.22728 0.77833 1.02109 0.94225 0.83914 1.22295 1.02552 1.00955 0.97533 1.88057 1.24768 1.22070 1.94385 0.91553 0.85202 0.90940 0.93977 0.89649 0.84889 0.90487 0.77595 0.91259 0.86208 0.92818 0.93054 0.89368 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -10.74 10.56 -51.36 -0.54 -11.28 16 3 C 0.47 14.91 7.29 71.23 0.52 15.43 16 4 O -0.52 -17.95 16.26 28.37 0.46 -17.49 16 5 C 0.11 3.30 2.93 29.88 0.09 3.39 16 6 H 0.11 3.24 6.49 -2.39 -0.02 3.22 16 7 C 0.04 1.23 4.56 86.31 0.39 1.62 16 8 N -0.52 -14.68 3.79 -899.78 -3.41 -18.09 16 9 C 0.05 1.54 5.45 85.56 0.47 2.01 16 10 C 0.45 19.35 7.35 87.66 0.64 19.99 16 11 O -0.60 -31.62 14.25 -3.06 -0.04 -31.66 16 12 N -0.59 -26.95 5.09 -306.98 -1.56 -28.51 16 13 C -0.32 -18.52 10.16 84.04 0.85 -17.67 16 14 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 15 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 16 N -0.94 -55.80 13.96 21.67 0.30 -55.49 16 17 Si 0.96 38.02 27.74 68.60 1.90 39.92 16 18 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 19 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 20 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 21 C 0.02 0.37 5.06 86.32 0.44 0.81 16 22 C 0.09 1.70 3.92 30.63 0.12 1.82 16 23 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 24 C -0.18 -3.39 8.88 71.98 0.64 -2.75 16 25 O -0.37 -10.21 9.83 -129.99 -1.28 -11.49 16 26 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 27 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.07 1.38 8.13 -2.38 -0.02 1.36 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 3.35 6.10 -2.38 -0.01 3.34 16 31 H 0.13 2.88 8.04 -2.39 -0.02 2.86 16 32 H 0.08 1.86 8.12 -2.39 -0.02 1.84 16 33 H 0.39 14.56 5.76 -92.71 -0.53 14.03 16 34 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.12 1.66 8.09 -2.39 -0.02 1.64 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.05 1.29 6.13 -2.39 -0.01 1.27 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -78.59 323.40 2.14 -76.45 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.48 Total: 31.54 kcal Atomic # 6 Polarization: 20.27 SS G_CDS: 5.82 Total: 26.10 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -4.67 Total: -102.10 kcal Atomic # 8 Polarization: -70.52 SS G_CDS: -1.40 Total: -71.92 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 1.90 Total: 39.92 kcal Total: -78.59 2.14 -76.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338370438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.350 kcal (2) G-P(sol) polarization free energy of solvation -78.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds