Wall clock time and date at job start Tue Mar 31 2020 03:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 116.99634 * 2 1 4 4 O 1.20827 * 120.00281 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99794 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.59242 * 331.62020 * 5 3 2 7 7 C 1.52980 * 109.59625 * 91.92348 * 5 3 2 8 8 N 1.46004 * 110.04800 * 170.06490 * 7 5 3 9 9 C 1.33717 * 122.92552 * 341.84227 * 8 7 5 10 10 O 1.21274 * 118.62709 * 181.68663 * 9 8 7 11 11 C 1.50256 * 122.74891 * 1.65994 * 9 8 7 12 12 N 1.46883 * 109.98716 * 342.83751 * 11 9 8 13 13 C 1.46903 * 111.00536 * 173.64690 * 12 11 9 14 14 C 1.53006 * 109.46824 * 52.80464 * 13 12 11 15 15 O 1.42892 * 109.46903 * 65.00485 * 14 13 12 16 16 C 1.42901 * 114.00196 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47539 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99773 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99959 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00135 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00079 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47145 * 90.00441 * 21 19 17 23 23 H 1.48499 * 109.47407 * 210.00324 * 21 19 17 24 24 H 1.48499 * 109.47612 * 330.00227 * 21 19 17 25 25 H 1.09004 * 109.46976 * 299.99315 * 1 2 3 26 26 H 1.08999 * 109.47646 * 59.99292 * 1 2 3 27 27 H 1.09000 * 109.47126 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.37522 * 290.24429 * 7 5 3 29 29 H 1.09001 * 109.37483 * 49.88788 * 7 5 3 30 30 H 0.96998 * 118.53705 * 161.81020 * 8 7 5 31 31 H 1.09003 * 109.38811 * 102.98316 * 11 9 8 32 32 H 1.09007 * 109.38724 * 222.66524 * 11 9 8 33 33 H 1.08994 * 109.47336 * 172.80461 * 13 12 11 34 34 H 1.09003 * 109.47176 * 292.81342 * 13 12 11 35 35 H 1.09007 * 109.46822 * 184.99943 * 14 13 12 36 36 H 1.08999 * 109.47297 * 305.00167 * 14 13 12 37 37 H 1.09007 * 109.46720 * 300.00154 * 16 15 14 38 38 H 1.08997 * 109.47440 * 59.99129 * 16 15 14 39 39 H 0.96994 * 120.00552 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9788 0.3917 0.4872 7 6 4.0755 1.3504 -1.4411 8 7 5.5018 1.6626 -1.4521 9 6 6.1391 2.1869 -0.4000 10 8 7.3195 2.4444 -0.5050 11 6 5.4539 2.4707 0.9067 12 7 3.9974 2.4855 0.7171 13 6 3.3000 2.6111 2.0039 14 6 3.8498 3.8185 2.7662 15 8 3.5397 5.0154 2.0499 16 6 4.0107 6.2084 2.6800 17 6 3.6309 7.4024 1.8427 18 1 3.0848 7.2640 0.9212 19 6 3.9814 8.6713 2.2524 20 7 3.6495 9.7134 1.5220 21 14 4.9266 8.9106 3.8458 22 1 6.3847 8.8665 3.5678 23 1 4.5750 10.2266 4.4371 24 1 4.5715 7.8289 4.7992 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.9114 0.3918 -1.9334 29 1 3.5310 2.1279 -1.9769 30 1 6.0096 1.4813 -2.2584 31 1 5.7166 1.6974 1.6286 32 1 5.7798 3.4404 1.2831 33 1 2.2333 2.7479 1.8272 34 1 3.4580 1.7073 2.5924 35 1 3.3964 3.8600 3.7566 36 1 4.9311 3.7240 2.8652 37 1 3.5604 6.2992 3.6685 38 1 5.0954 6.1638 2.7777 39 1 3.8958 10.6062 1.8104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339141465.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:24 Heat of formation + Delta-G solvation = -136.256966 kcal Electronic energy + Delta-G solvation = -23514.064875 eV Core-core repulsion = 19844.199974 eV Total energy + Delta-G solvation = -3669.864901 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.29095 -40.00593 -37.93092 -36.80800 -36.32847 -34.82763 -32.57487 -31.09425 -29.75551 -27.97169 -27.68038 -26.04531 -24.35114 -21.87382 -21.64566 -21.34310 -19.45378 -18.34368 -17.64016 -17.12729 -16.69507 -16.62667 -16.27711 -15.73666 -15.48464 -15.29958 -14.77087 -14.41914 -14.23810 -14.00153 -13.70194 -13.50536 -13.19096 -12.84516 -12.62014 -12.42493 -12.32890 -12.10063 -11.93408 -11.48104 -11.06282 -10.89391 -10.74306 -10.65106 -10.37166 -10.00081 -9.81826 -9.31470 -9.12009 -8.81017 -8.61849 -8.41401 -6.05155 -4.03605 1.84318 2.19540 2.51271 3.04673 3.28973 3.35460 3.36206 3.46945 4.22591 4.30844 4.40359 4.43721 4.54790 4.60187 4.84144 4.93327 4.96561 5.03975 5.12110 5.25764 5.25812 5.38092 5.43999 5.52554 5.64430 5.83810 6.00415 6.09963 6.45450 6.59968 6.64400 6.67156 7.03591 7.04905 7.51380 7.65355 8.05013 8.07116 8.72667 9.08811 9.54185 11.08108 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.004639 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.455868 B = 6033.961649 C = 6988.650105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.461 3.539 4 O -0.459 6.459 5 C 0.075 3.925 6 H 0.084 0.916 7 C 0.129 3.871 8 N -0.716 5.716 9 C 0.530 3.470 10 O -0.545 6.545 11 C 0.037 3.963 12 N -0.497 5.497 13 C 0.044 3.956 14 C 0.058 3.942 15 O -0.361 6.361 16 C 0.167 3.833 17 C -0.515 4.515 18 H 0.084 0.916 19 C 0.072 3.928 20 N -0.896 5.896 21 Si 0.875 3.125 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.267 1.267 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.405 0.595 31 H 0.075 0.925 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.001 0.999 38 H -0.003 1.003 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.536 -24.987 -2.234 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.300 3.700 4 O -0.342 6.342 5 C -0.036 4.036 6 H 0.101 0.899 7 C 0.004 3.996 8 N -0.370 5.370 9 C 0.317 3.683 10 O -0.422 6.422 11 C -0.092 4.092 12 N -0.225 5.225 13 C -0.082 4.082 14 C -0.020 4.020 15 O -0.279 6.279 16 C 0.092 3.908 17 C -0.553 4.553 18 H 0.102 0.898 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.702 3.298 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.192 1.192 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.120 0.880 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.242 0.758 31 H 0.092 0.908 32 H 0.150 0.850 33 H 0.121 0.879 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.504 -23.857 -2.556 24.124 hybrid contribution 0.675 -0.418 1.295 1.519 sum -1.829 -24.274 -1.261 24.376 Atomic orbital electron populations 1.23312 0.75728 1.03743 1.03052 1.86480 1.23847 1.33172 1.84385 1.23027 0.90918 0.81846 0.74181 1.90803 1.66166 1.35763 1.41483 1.21541 0.88988 0.95051 0.97981 0.89861 1.21291 0.81864 1.02545 0.93887 1.45388 1.09773 1.65074 1.16748 1.20093 0.86913 0.75683 0.85652 1.90786 1.16093 1.52049 1.83267 1.22467 0.86682 1.05591 0.94506 1.62411 1.04310 1.33646 1.22109 1.22542 1.01480 0.96609 0.87603 1.22358 0.98090 0.87112 0.94418 1.88075 1.79014 1.12800 1.48045 1.20618 0.92929 0.83655 0.93643 1.20887 1.36877 0.88248 1.09241 0.89843 1.24761 0.95674 0.95553 0.96966 1.69876 1.46769 0.98541 1.38297 0.86870 0.80805 0.77927 0.84239 1.19918 1.20842 1.19194 0.91597 0.91554 0.87999 0.89092 0.89587 0.75843 0.90753 0.84959 0.87871 0.93632 0.93461 0.94090 0.98128 0.98520 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.31 10.57 -39.25 -0.41 -3.72 16 3 C 0.46 5.30 6.05 36.01 0.22 5.52 16 4 O -0.46 -7.13 14.59 -18.75 -0.27 -7.41 16 5 C 0.07 0.78 2.49 -68.72 -0.17 0.61 16 6 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 7 C 0.13 1.16 6.69 -4.32 -0.03 1.13 16 8 N -0.72 -7.59 5.52 -61.07 -0.34 -7.93 16 9 C 0.53 7.47 7.81 -11.67 -0.09 7.38 16 10 O -0.55 -9.67 17.82 5.56 0.10 -9.57 16 11 C 0.04 0.50 4.78 -5.20 -0.02 0.47 16 12 N -0.50 -6.96 4.48 -229.52 -1.03 -7.99 16 13 C 0.04 0.63 4.81 -3.82 -0.02 0.61 16 14 C 0.06 0.99 5.65 37.16 0.21 1.20 16 15 O -0.36 -8.53 10.27 -35.23 -0.36 -8.89 16 16 C 0.17 4.32 4.76 36.01 0.17 4.49 16 17 C -0.51 -15.74 9.99 -34.44 -0.34 -16.09 16 18 H 0.08 2.82 8.06 -52.49 -0.42 2.40 16 19 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 20 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 21 Si 0.87 21.87 27.47 -169.99 -4.67 17.20 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 25 H 0.07 0.49 8.13 -51.93 -0.42 0.06 16 26 H 0.07 0.47 8.13 -51.93 -0.42 0.04 16 27 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.88 8.11 -51.93 -0.42 0.46 16 30 H 0.40 3.56 8.84 -40.82 -0.36 3.20 16 31 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 32 H 0.13 2.08 6.48 -51.92 -0.34 1.74 16 33 H 0.10 1.65 5.79 -51.93 -0.30 1.35 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.04 0.64 6.16 -51.93 -0.32 0.32 16 37 H 0.00 0.03 7.20 -51.92 -0.37 -0.35 16 38 H 0.00 -0.07 7.57 -51.93 -0.39 -0.46 16 39 H 0.27 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 326.04 15.07 4.91 4.91 Total: -1.00 -37.94 326.04 -5.88 -43.82 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.47 Total: -1.57 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 0.89 Total: 8.71 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.59 Total: -43.48 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.95 Total: -29.59 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -37.94 -5.88 -43.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339141465.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.432 kcal (2) G-P(sol) polarization free energy of solvation -37.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds