Wall clock time and date at job start Tue Mar 31 2020 03:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34221 * 117.00268 * 2 1 4 4 O 1.20825 * 120.00064 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00140 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.71246 * 29.14037 * 5 3 2 7 7 C 1.52997 * 109.58808 * 268.73988 * 5 3 2 8 8 N 1.46009 * 110.03692 * 189.92868 * 7 5 3 9 9 C 1.33712 * 122.92809 * 18.16257 * 8 7 5 10 10 O 1.21289 * 118.62527 * 178.30550 * 9 8 7 11 11 C 1.50253 * 122.75368 * 358.33245 * 9 8 7 12 12 N 1.46903 * 109.97960 * 17.18265 * 11 9 8 13 13 C 1.46893 * 111.00331 * 186.33706 * 12 11 9 14 14 C 1.53003 * 109.47522 * 62.90123 * 13 12 11 15 15 O 1.42894 * 109.47242 * 64.99655 * 14 13 12 16 16 C 1.42903 * 114.00189 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47065 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00173 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99905 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00113 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00057 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47207 * 89.99804 * 21 19 17 23 23 H 1.48500 * 109.47243 * 209.99795 * 21 19 17 24 24 H 1.48502 * 109.46724 * 329.99787 * 21 19 17 25 25 H 1.08996 * 109.47121 * 300.00348 * 1 2 3 26 26 H 1.08999 * 109.46315 * 60.00193 * 1 2 3 27 27 H 1.08998 * 109.47118 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.37458 * 69.76261 * 7 5 3 29 29 H 1.08997 * 109.37469 * 310.10696 * 7 5 3 30 30 H 0.96995 * 118.53393 * 198.13789 * 8 7 5 31 31 H 1.09000 * 109.38900 * 257.02259 * 11 9 8 32 32 H 1.09005 * 109.30577 * 137.28033 * 11 9 8 33 33 H 1.09001 * 109.47100 * 302.90110 * 13 12 11 34 34 H 1.09002 * 109.47398 * 182.89979 * 13 12 11 35 35 H 1.08997 * 109.47352 * 185.00548 * 14 13 12 36 36 H 1.09003 * 109.46805 * 305.00323 * 14 13 12 37 37 H 1.08995 * 109.47369 * 300.00672 * 16 15 14 38 38 H 1.09002 * 109.46574 * 60.00690 * 16 15 14 39 39 H 0.97004 * 119.99868 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9806 0.3989 -0.4987 7 6 4.0764 1.3335 1.4419 8 7 5.5027 1.6454 1.4555 9 6 6.1395 2.1817 0.4091 10 8 7.3201 2.4380 0.5164 11 6 5.4536 2.4806 -0.8939 12 7 3.9971 2.4938 -0.7030 13 6 3.2990 2.6346 -1.9877 14 6 3.6066 1.4236 -2.8708 15 8 3.0617 0.2464 -2.2715 16 6 3.2950 -0.9483 -3.0202 17 6 2.6801 -2.1206 -2.2999 18 1 2.1626 -1.9685 -1.3643 19 6 2.7773 -3.3871 -2.8360 20 7 2.2404 -4.4101 -2.2077 21 14 3.6718 -3.6501 -4.4548 22 1 5.1072 -3.9219 -4.1887 23 1 3.0732 -4.8063 -5.1690 24 1 3.5460 -2.4310 -5.2934 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.9126 0.3693 1.9230 29 1 3.5323 2.1049 1.9868 30 1 6.0109 1.4555 2.2595 31 1 5.7159 1.7156 -1.6247 32 1 5.7797 3.4552 -1.2575 33 1 3.6361 3.5431 -2.4868 34 1 2.2247 2.6933 -1.8130 35 1 3.1619 1.5694 -3.8552 36 1 4.6862 1.3130 -2.9726 37 1 2.8441 -0.8520 -4.0079 38 1 4.3682 -1.1078 -3.1246 39 1 2.3091 -5.3012 -2.5848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339141466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:29 Heat of formation + Delta-G solvation = -137.316284 kcal Electronic energy + Delta-G solvation = -24737.546050 eV Core-core repulsion = 21067.635213 eV Total energy + Delta-G solvation = -3669.910837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.98063 -39.60607 -38.00642 -36.54521 -35.76371 -34.72134 -32.67665 -30.66537 -29.79820 -27.83594 -27.21732 -25.76022 -24.15633 -22.03206 -21.82867 -20.90205 -19.04723 -17.83327 -17.33154 -16.95846 -16.80938 -16.27016 -15.84160 -15.52471 -15.51263 -15.09046 -14.64817 -14.50912 -13.94909 -13.79487 -13.41935 -13.19313 -12.87876 -12.64232 -12.51753 -12.25862 -12.01449 -11.69841 -11.48282 -11.44900 -11.16716 -10.95185 -10.80066 -10.22971 -10.06163 -9.94311 -9.88312 -9.25080 -9.18625 -9.02498 -8.62299 -8.36170 -6.18341 -4.17145 2.43221 2.60511 2.93661 3.17624 3.25094 3.25231 3.26670 3.75533 4.28425 4.38082 4.53709 4.71538 5.02305 5.09534 5.12710 5.20773 5.25793 5.34675 5.41438 5.44638 5.52000 5.63961 5.65595 5.74733 5.92876 6.00467 6.10294 6.45074 6.53298 6.70189 6.77024 6.85620 6.87052 7.17775 7.49618 7.81276 8.12835 8.20878 8.52816 8.99780 9.41526 10.93927 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.006538 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.471290 B = 4281.608504 C = 4981.309791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.321 6.321 3 C 0.496 3.504 4 O -0.512 6.512 5 C 0.069 3.931 6 H 0.121 0.879 7 C 0.124 3.876 8 N -0.712 5.712 9 C 0.530 3.470 10 O -0.557 6.557 11 C 0.032 3.968 12 N -0.507 5.507 13 C 0.040 3.960 14 C 0.009 3.991 15 O -0.379 6.379 16 C 0.169 3.831 17 C -0.517 4.517 18 H 0.097 0.903 19 C 0.075 3.925 20 N -0.892 5.892 21 Si 0.868 3.132 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.269 1.269 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.403 0.597 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.002 0.998 38 H -0.004 1.004 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 11.370 4.110 12.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.234 6.234 3 C 0.338 3.662 4 O -0.401 6.401 5 C -0.041 4.041 6 H 0.138 0.862 7 C -0.001 4.001 8 N -0.364 5.364 9 C 0.316 3.684 10 O -0.435 6.435 11 C -0.098 4.098 12 N -0.233 5.233 13 C -0.088 4.088 14 C -0.070 4.070 15 O -0.298 6.298 16 C 0.094 3.906 17 C -0.554 4.554 18 H 0.115 0.885 19 C -0.127 4.127 20 N -0.531 5.531 21 Si 0.695 3.305 22 H -0.201 1.201 23 H -0.208 1.208 24 H -0.193 1.193 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.240 0.760 31 H 0.101 0.899 32 H 0.137 0.863 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.020 0.980 38 H 0.014 0.986 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.894 12.019 4.434 12.842 hybrid contribution 0.713 -1.107 -1.576 2.053 sum 1.606 10.912 2.858 11.394 Atomic orbital electron populations 1.23183 0.76688 1.03855 1.01308 1.86671 1.22759 1.31597 1.82378 1.22515 0.90382 0.81729 0.71543 1.90593 1.66885 1.36601 1.46038 1.21691 0.90548 0.95891 0.95955 0.86151 1.21414 0.80966 1.02449 0.95261 1.45403 1.10248 1.63799 1.16961 1.20065 0.86810 0.75958 0.85526 1.90762 1.16004 1.53601 1.83098 1.22410 0.87534 1.04821 0.95065 1.62692 1.03837 1.35384 1.21412 1.22648 1.02118 0.96516 0.87497 1.23202 0.97809 0.88361 0.97596 1.87934 1.78200 1.15124 1.48564 1.20644 0.94750 0.83117 0.92077 1.20962 1.35818 0.88803 1.09867 0.88538 1.24732 0.95299 0.95751 0.96955 1.69855 1.44754 0.99479 1.39005 0.86977 0.80490 0.78295 0.84695 1.20060 1.20825 1.19339 0.92859 0.92218 0.87936 0.88803 0.90406 0.76024 0.89885 0.86313 0.88774 0.87738 0.93070 0.93822 0.98008 0.98631 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.56 101.05 1.07 1.72 16 2 O -0.32 -5.79 9.12 -43.95 -0.40 -6.19 16 3 C 0.50 8.33 4.68 36.01 0.17 8.50 16 4 O -0.51 -9.08 14.55 -18.75 -0.27 -9.35 16 5 C 0.07 1.03 1.74 -68.70 -0.12 0.91 16 6 H 0.12 2.11 6.05 -51.93 -0.31 1.79 16 7 C 0.12 1.50 6.69 -4.31 -0.03 1.47 16 8 N -0.71 -8.68 5.52 -61.06 -0.34 -9.02 16 9 C 0.53 7.62 7.81 -11.68 -0.09 7.53 16 10 O -0.56 -9.66 17.83 5.55 0.10 -9.56 16 11 C 0.03 0.41 5.41 -5.19 -0.03 0.38 16 12 N -0.51 -7.05 4.64 -229.50 -1.07 -8.12 16 13 C 0.04 0.54 5.50 -3.83 -0.02 0.52 16 14 C 0.01 0.14 5.76 37.16 0.21 0.36 16 15 O -0.38 -7.49 5.31 -47.19 -0.25 -7.74 16 16 C 0.17 3.88 4.76 36.01 0.17 4.06 16 17 C -0.52 -13.88 9.99 -34.44 -0.34 -14.23 16 18 H 0.10 2.77 7.11 -52.49 -0.37 2.40 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 20 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 21 Si 0.87 20.48 27.47 -169.99 -4.67 15.81 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 25 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 26 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 27 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 30 H 0.40 4.16 8.84 -40.82 -0.36 3.80 16 31 H 0.08 1.09 5.98 -51.93 -0.31 0.78 16 32 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.10 1.65 5.59 -51.93 -0.29 1.36 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.04 0.64 6.10 -51.93 -0.32 0.32 16 37 H 0.00 0.05 7.20 -51.93 -0.37 -0.32 16 38 H 0.00 -0.09 7.57 -51.93 -0.39 -0.48 16 39 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 315.35 15.07 4.75 4.75 Total: -1.00 -32.37 315.35 -5.76 -38.13 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.28 Total: 3.25 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 0.89 Total: 13.19 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: -0.63 Total: -42.28 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.83 Total: -32.84 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.37 -5.76 -38.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339141466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.189 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds