Wall clock time and date at job start Tue Mar 31 2020 03:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34221 * 117.00268 * 2 1 4 4 O 1.20825 * 120.00064 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00140 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.71246 * 29.14037 * 5 3 2 7 7 C 1.52997 * 109.58808 * 268.73988 * 5 3 2 8 8 N 1.46009 * 110.03692 * 189.92868 * 7 5 3 9 9 C 1.33712 * 122.92809 * 18.16257 * 8 7 5 10 10 O 1.21289 * 118.62527 * 178.30550 * 9 8 7 11 11 C 1.50253 * 122.75368 * 358.33245 * 9 8 7 12 12 N 1.46903 * 109.97960 * 17.18265 * 11 9 8 13 13 C 1.46893 * 111.00331 * 186.33706 * 12 11 9 14 14 C 1.53003 * 109.47522 * 62.90123 * 13 12 11 15 15 O 1.42894 * 109.47242 * 64.99655 * 14 13 12 16 16 C 1.42903 * 114.00189 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47065 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00173 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99905 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00113 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00057 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47207 * 89.99804 * 21 19 17 23 23 H 1.48500 * 109.47243 * 209.99795 * 21 19 17 24 24 H 1.48502 * 109.46724 * 329.99787 * 21 19 17 25 25 H 1.08996 * 109.47121 * 300.00348 * 1 2 3 26 26 H 1.08999 * 109.46315 * 60.00193 * 1 2 3 27 27 H 1.08998 * 109.47118 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.37458 * 69.76261 * 7 5 3 29 29 H 1.08997 * 109.37469 * 310.10696 * 7 5 3 30 30 H 0.96995 * 118.53393 * 198.13789 * 8 7 5 31 31 H 1.09000 * 109.38900 * 257.02259 * 11 9 8 32 32 H 1.09005 * 109.30577 * 137.28033 * 11 9 8 33 33 H 1.09001 * 109.47100 * 302.90110 * 13 12 11 34 34 H 1.09002 * 109.47398 * 182.89979 * 13 12 11 35 35 H 1.08997 * 109.47352 * 185.00548 * 14 13 12 36 36 H 1.09003 * 109.46805 * 305.00323 * 14 13 12 37 37 H 1.08995 * 109.47369 * 300.00672 * 16 15 14 38 38 H 1.09002 * 109.46574 * 60.00690 * 16 15 14 39 39 H 0.97004 * 119.99868 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9806 0.3989 -0.4987 7 6 4.0764 1.3335 1.4419 8 7 5.5027 1.6454 1.4555 9 6 6.1395 2.1817 0.4091 10 8 7.3201 2.4380 0.5164 11 6 5.4536 2.4806 -0.8939 12 7 3.9971 2.4938 -0.7030 13 6 3.2990 2.6346 -1.9877 14 6 3.6066 1.4236 -2.8708 15 8 3.0617 0.2464 -2.2715 16 6 3.2950 -0.9483 -3.0202 17 6 2.6801 -2.1206 -2.2999 18 1 2.1626 -1.9685 -1.3643 19 6 2.7773 -3.3871 -2.8360 20 7 2.2404 -4.4101 -2.2077 21 14 3.6718 -3.6501 -4.4548 22 1 5.1072 -3.9219 -4.1887 23 1 3.0732 -4.8063 -5.1690 24 1 3.5460 -2.4310 -5.2934 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.9126 0.3693 1.9230 29 1 3.5323 2.1049 1.9868 30 1 6.0109 1.4555 2.2595 31 1 5.7159 1.7156 -1.6247 32 1 5.7797 3.4552 -1.2575 33 1 3.6361 3.5431 -2.4868 34 1 2.2247 2.6933 -1.8130 35 1 3.1619 1.5694 -3.8552 36 1 4.6862 1.3130 -2.9726 37 1 2.8441 -0.8520 -4.0079 38 1 4.3682 -1.1078 -3.1246 39 1 2.3091 -5.3012 -2.5848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339141466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:28 Heat of formation + Delta-G solvation = -162.770614 kcal Electronic energy + Delta-G solvation = -24738.649833 eV Core-core repulsion = 21067.635213 eV Total energy + Delta-G solvation = -3671.014619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.17762 -40.83995 -39.32594 -37.93576 -37.07786 -35.89030 -34.69017 -31.83966 -31.14142 -29.54437 -28.45194 -26.89854 -25.33935 -23.90042 -23.06881 -22.09200 -20.23777 -19.13683 -18.78680 -18.49288 -18.10078 -17.52696 -17.26306 -16.91886 -16.78470 -16.38909 -16.22194 -15.68781 -15.23643 -15.19182 -14.67649 -14.53708 -14.42111 -14.04483 -13.82274 -13.55007 -13.29227 -13.12694 -12.88277 -12.71459 -12.67123 -12.47328 -12.35498 -11.82852 -11.52319 -11.33616 -11.23000 -11.08162 -10.85827 -10.38271 -10.20386 -9.53800 -8.27628 -6.31209 1.16182 1.33627 1.35191 1.43512 1.47214 1.74608 2.20061 2.32187 2.62803 3.02936 3.04971 3.46263 3.60153 3.82262 3.99037 4.06120 4.18372 4.21178 4.33524 4.36620 4.42474 4.46699 4.55133 4.56528 4.65060 4.78020 4.78450 4.97408 5.03584 5.43815 5.51268 5.55723 5.63781 5.76809 6.03233 6.11627 6.65278 6.86808 6.90473 7.06612 7.31477 8.87578 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.006538 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.471290 B = 4281.608504 C = 4981.309791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.345 6.345 3 C 0.498 3.502 4 O -0.524 6.524 5 C 0.069 3.931 6 H 0.097 0.903 7 C 0.129 3.871 8 N -0.702 5.702 9 C 0.526 3.474 10 O -0.590 6.590 11 C 0.035 3.965 12 N -0.505 5.505 13 C 0.046 3.954 14 C 0.002 3.998 15 O -0.389 6.389 16 C 0.179 3.821 17 C -0.523 4.523 18 H 0.065 0.935 19 C 0.019 3.981 20 N -0.937 5.937 21 Si 0.932 3.068 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.252 1.252 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.413 0.587 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.130 0.870 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.003 0.997 38 H 0.003 0.997 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 12.757 3.232 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.259 6.259 3 C 0.341 3.659 4 O -0.413 6.413 5 C -0.040 4.040 6 H 0.114 0.886 7 C 0.004 3.996 8 N -0.354 5.354 9 C 0.313 3.687 10 O -0.471 6.471 11 C -0.094 4.094 12 N -0.231 5.231 13 C -0.081 4.081 14 C -0.076 4.076 15 O -0.308 6.308 16 C 0.104 3.896 17 C -0.561 4.561 18 H 0.083 0.917 19 C -0.179 4.179 20 N -0.578 5.578 21 Si 0.756 3.244 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.175 1.175 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.121 0.879 28 H 0.127 0.873 29 H 0.108 0.892 30 H 0.251 0.749 31 H 0.101 0.899 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.020 0.980 38 H 0.021 0.979 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.811 13.424 3.573 14.009 hybrid contribution 0.343 -1.484 -1.217 1.950 sum 2.154 11.940 2.356 12.359 Atomic orbital electron populations 1.23306 0.75598 1.04242 1.02174 1.86660 1.24182 1.32593 1.82505 1.22785 0.91008 0.81167 0.70975 1.90578 1.67324 1.36739 1.46704 1.21670 0.89279 0.95471 0.97616 0.88596 1.21449 0.80716 1.03779 0.93638 1.45350 1.10314 1.62716 1.17023 1.20315 0.86467 0.75669 0.86255 1.90751 1.17344 1.55257 1.83743 1.22467 0.86528 1.06098 0.94350 1.62755 1.04470 1.34395 1.21488 1.22670 1.01082 0.97049 0.87319 1.23488 0.98644 0.87145 0.98365 1.87937 1.78811 1.15440 1.48635 1.20307 0.94466 0.83324 0.91525 1.21222 1.35256 0.90573 1.09078 0.91691 1.25560 0.96218 0.95469 1.00646 1.69997 1.46661 1.00055 1.41054 0.85946 0.79295 0.78743 0.80383 1.19286 1.20665 1.17540 0.90590 0.92707 0.87880 0.87337 0.89167 0.74877 0.89862 0.83999 0.85172 0.89741 0.92049 0.92333 0.97962 0.97923 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.23 10.56 113.37 1.20 2.42 16 2 O -0.35 -12.66 9.12 -46.82 -0.43 -13.09 16 3 C 0.50 16.49 4.68 71.24 0.33 16.82 16 4 O -0.52 -18.15 14.55 21.97 0.32 -17.83 16 5 C 0.07 2.01 1.74 44.11 0.08 2.09 16 6 H 0.10 3.32 6.05 -2.39 -0.01 3.30 16 7 C 0.13 2.92 6.69 86.47 0.58 3.50 16 8 N -0.70 -15.96 5.52 -466.07 -2.57 -18.53 16 9 C 0.53 14.22 7.81 87.68 0.69 14.90 16 10 O -0.59 -19.70 17.83 -3.06 -0.05 -19.75 16 11 C 0.04 0.82 5.41 85.42 0.46 1.29 16 12 N -0.50 -12.95 4.64 -880.01 -4.09 -17.04 16 13 C 0.05 1.15 5.50 86.31 0.47 1.63 16 14 C 0.00 0.05 5.76 71.98 0.41 0.47 16 15 O -0.39 -15.03 5.31 -137.55 -0.73 -15.76 16 16 C 0.18 8.05 4.76 71.24 0.34 8.39 16 17 C -0.52 -28.41 9.99 25.60 0.26 -28.16 16 18 H 0.06 3.86 7.11 -2.91 -0.02 3.84 16 19 C 0.02 1.05 5.47 84.65 0.46 1.51 16 20 N -0.94 -55.49 13.96 21.45 0.30 -55.19 16 21 Si 0.93 41.60 27.47 68.60 1.88 43.49 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 24 H -0.25 -10.44 6.54 99.48 0.65 -9.79 16 25 H 0.08 1.91 8.13 -2.39 -0.02 1.90 16 26 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 27 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.09 1.88 8.11 -2.39 -0.02 1.86 16 30 H 0.41 7.86 8.84 -92.71 -0.82 7.04 16 31 H 0.08 1.99 5.98 -2.39 -0.01 1.98 16 32 H 0.14 2.68 8.14 -2.38 -0.02 2.66 16 33 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.08 2.52 5.59 -2.39 -0.01 2.51 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.53 6.10 -2.39 -0.01 1.52 16 37 H 0.00 0.12 7.20 -2.39 -0.02 0.10 16 38 H 0.00 0.13 7.57 -2.39 -0.02 0.12 16 39 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -69.65 315.35 0.12 -69.53 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.21 Total: 19.31 kcal Atomic # 6 Polarization: 19.58 SS G_CDS: 5.28 Total: 24.86 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -6.36 Total: -90.76 kcal Atomic # 8 Polarization: -65.53 SS G_CDS: -0.89 Total: -66.43 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.88 Total: 43.49 kcal Total: -69.65 0.12 -69.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339141466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.241 kcal (2) G-P(sol) polarization free energy of solvation -69.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds