Wall clock time and date at job start Tue Mar 31 2020 03:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99762 * 2 1 4 4 H 1.48499 * 109.47029 * 239.99807 * 3 2 1 5 5 H 1.48499 * 109.47405 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46475 * 120.00539 * 3 2 1 7 7 C 1.37881 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99658 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47450 * 179.97438 * 9 7 2 11 11 N 1.46495 * 109.47378 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99843 * 180.02562 * 11 10 9 13 13 O 1.21581 * 120.00467 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99789 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99620 * 179.97438 * 14 12 11 16 16 H 1.08995 * 109.47422 * 34.99750 * 15 14 12 17 17 C 1.53003 * 109.47304 * 274.99696 * 15 14 12 18 18 O 1.42902 * 109.46693 * 295.50895 * 17 15 14 19 19 C 1.53001 * 109.46641 * 154.99871 * 15 14 12 20 20 C 1.53172 * 109.54714 * 303.32087 * 19 15 14 21 21 C 1.53087 * 109.16853 * 183.15555 * 20 19 15 22 22 O 1.42908 * 109.41654 * 57.60772 * 21 20 19 23 23 C 1.42911 * 114.09483 * 298.84612 * 22 21 20 24 24 C 1.53095 * 109.41361 * 61.15642 * 23 22 21 25 25 H 0.97003 * 119.99983 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47591 * 59.99334 * 9 7 2 27 27 H 1.09007 * 109.46698 * 299.99702 * 9 7 2 28 28 H 1.09002 * 109.46540 * 59.99515 * 10 9 7 29 29 H 1.08995 * 109.46713 * 299.99884 * 10 9 7 30 30 H 0.97000 * 120.00117 * 0.02562 * 11 10 9 31 31 H 0.96992 * 120.00181 * 359.97438 * 14 12 11 32 32 H 1.08999 * 109.47120 * 55.50248 * 17 15 14 33 33 H 1.08992 * 109.47273 * 175.50571 * 17 15 14 34 34 H 0.96703 * 113.99474 * 179.97438 * 18 17 15 35 35 H 1.08995 * 109.54601 * 63.59422 * 19 15 14 36 36 H 1.09004 * 109.52295 * 303.06164 * 20 19 15 37 37 H 1.09000 * 109.52152 * 63.24407 * 20 19 15 38 38 H 1.08999 * 109.47825 * 297.62874 * 21 20 19 39 39 H 1.08996 * 109.48301 * 177.59287 * 21 20 19 40 40 H 1.08996 * 109.48206 * 301.17343 * 23 22 21 41 41 H 1.09004 * 109.47325 * 181.13748 * 23 22 21 42 42 H 1.09001 * 109.51912 * 182.48508 * 24 23 22 43 43 H 1.09002 * 109.52033 * 62.29837 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 7 1.5128 -4.9308 -0.0033 12 6 2.1867 -6.0980 -0.0037 13 8 3.4025 -6.0980 -0.0041 14 7 1.5128 -7.2652 -0.0047 15 6 2.2454 -8.5339 -0.0057 16 1 3.1560 -8.4281 0.5838 17 6 2.6093 -8.9116 -1.4430 18 8 1.4146 -9.1525 -2.1892 19 6 1.3681 -9.6297 0.6030 20 6 0.9344 -9.2152 2.0124 21 6 0.1236 -10.3502 2.6430 22 8 0.9117 -11.5422 2.6644 23 6 1.3065 -12.0039 1.3709 24 6 2.1649 -10.9351 0.6892 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5563 -0.8919 27 1 0.6241 -2.5574 0.8881 28 1 2.8720 -3.6051 0.8873 29 1 2.8719 -3.6036 -0.8927 30 1 0.5428 -4.9308 -0.0033 31 1 0.5429 -7.2652 -0.0047 32 1 3.1666 -8.0956 -1.9031 33 1 3.2224 -9.8127 -1.4377 34 1 1.5698 -9.3971 -3.1118 35 1 0.4875 -9.7807 -0.0212 36 1 1.8165 -9.0159 2.6211 37 1 0.3199 -8.3168 1.9549 38 1 -0.7789 -10.5217 2.0563 39 1 -0.1514 -10.0780 3.6620 40 1 0.4196 -12.1970 0.7675 41 1 1.8837 -12.9228 1.4736 42 1 2.4303 -11.2668 -0.3146 43 1 3.0718 -10.7706 1.2712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343988684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:21 Heat of formation + Delta-G solvation = -148.333956 kcal Electronic energy + Delta-G solvation = -23122.306665 eV Core-core repulsion = 19587.751160 eV Total energy + Delta-G solvation = -3534.555504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.30920 -39.19788 -37.37420 -35.34114 -34.66586 -33.11909 -32.64383 -31.38637 -29.84785 -28.43533 -25.34396 -24.65763 -23.68902 -21.94795 -20.88817 -20.45444 -20.26691 -18.08901 -17.46450 -16.60317 -16.36047 -16.24560 -15.84872 -15.37590 -14.98086 -14.78717 -14.56634 -14.50986 -14.04841 -13.75623 -13.56886 -13.23566 -12.77603 -12.60983 -12.48726 -12.25628 -11.91712 -11.59650 -11.18379 -11.10742 -11.01001 -10.84323 -10.63980 -10.52328 -10.30395 -10.17015 -9.90595 -9.78116 -9.53085 -9.26044 -8.97069 -8.46821 -8.22578 -6.08025 -4.10717 3.03266 3.32078 3.35772 3.39505 3.58894 3.62459 4.14529 4.30757 4.39747 4.48918 4.54345 4.70302 4.76007 4.94443 5.05079 5.13336 5.19070 5.24852 5.28929 5.34202 5.41051 5.46195 5.58121 5.65448 5.68128 5.83504 5.88086 6.14403 6.32607 6.41381 6.65706 6.79441 6.92614 7.02821 7.28720 7.43675 7.58617 7.64991 7.91154 8.27584 8.46856 8.94068 9.02614 9.53869 11.03618 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.029256 B = 0.002857 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.822579 B = 9797.511378 C =10247.005747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.141 3.859 11 N -0.738 5.738 12 C 0.699 3.301 13 O -0.602 6.602 14 N -0.741 5.741 15 C 0.177 3.823 16 H 0.098 0.902 17 C 0.061 3.939 18 O -0.568 6.568 19 C -0.092 4.092 20 C -0.151 4.151 21 C 0.061 3.939 22 O -0.385 6.385 23 C 0.063 3.937 24 C -0.148 4.148 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.393 0.607 31 H 0.395 0.605 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.376 0.624 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.470 -24.566 -0.210 24.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.391 5.391 12 C 0.399 3.601 13 O -0.482 6.482 14 N -0.396 5.396 15 C 0.070 3.930 16 H 0.116 0.884 17 C -0.019 4.019 18 O -0.373 6.373 19 C -0.112 4.112 20 C -0.189 4.189 21 C -0.015 4.015 22 O -0.304 6.304 23 C -0.014 4.014 24 C -0.186 4.186 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.226 0.774 31 H 0.229 0.771 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.222 0.778 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.297 -24.335 0.546 24.343 hybrid contribution -0.251 1.054 -0.909 1.414 sum 0.046 -23.281 -0.363 23.284 Atomic orbital electron populations 1.69950 1.06088 1.26955 1.50380 1.24997 0.94894 0.99388 0.95010 0.86568 0.79510 0.82648 0.78781 1.20116 1.21255 1.20105 1.21020 0.93229 0.90399 1.51365 0.92289 1.19314 0.94243 0.91064 0.97778 1.21573 0.95618 0.80473 1.00549 1.45525 1.09843 1.05323 1.78450 1.16082 0.85635 0.80550 0.77835 1.90872 1.11787 1.86714 1.58785 1.45053 1.09448 1.04061 1.81046 1.20806 0.96005 0.82241 0.93900 0.88406 1.22718 0.86865 0.99288 0.92988 1.86447 1.31964 1.92320 1.26581 1.21373 0.99430 0.94045 0.96304 1.22238 1.01596 0.98913 0.96121 1.22594 0.92797 0.84471 1.01673 1.87935 1.71653 1.42543 1.28260 1.22550 0.97761 0.96576 0.84522 1.22230 0.99538 0.95181 1.01681 0.92809 0.96013 0.95989 0.92834 0.92889 0.77407 0.77102 0.92776 0.93075 0.77778 0.89472 0.90822 0.90503 0.93183 0.88834 0.93171 0.88940 0.90526 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.34 5.09 -27.89 -0.14 0.20 16 10 C 0.14 3.07 5.61 -4.04 -0.02 3.04 16 11 N -0.74 -13.27 5.56 -65.23 -0.36 -13.63 16 12 C 0.70 12.28 8.53 -86.91 -0.74 11.54 16 13 O -0.60 -12.82 16.01 5.29 0.08 -12.73 16 14 N -0.74 -9.58 4.34 -58.68 -0.25 -9.84 16 15 C 0.18 1.99 1.95 -67.93 -0.13 1.86 16 16 H 0.10 1.27 7.58 -51.93 -0.39 0.88 16 17 C 0.06 0.63 6.46 37.16 0.24 0.87 16 18 O -0.57 -5.40 12.68 -35.23 -0.45 -5.84 16 19 C -0.09 -0.83 1.76 -90.44 -0.16 -0.98 16 20 C -0.15 -1.38 5.17 -26.60 -0.14 -1.52 16 21 C 0.06 0.52 6.84 37.20 0.25 0.78 16 22 O -0.39 -3.86 10.77 -35.23 -0.38 -4.24 16 23 C 0.06 0.48 6.84 37.21 0.25 0.73 16 24 C -0.15 -1.14 5.07 -26.59 -0.13 -1.28 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.39 6.15 8.49 -40.82 -0.35 5.80 16 31 H 0.40 4.36 8.21 -40.82 -0.34 4.03 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.42 6.84 -51.93 -0.36 0.06 16 34 H 0.38 2.14 9.12 45.56 0.42 2.55 16 35 H 0.09 0.81 7.46 -51.93 -0.39 0.42 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.69 7.36 -51.93 -0.38 0.31 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.51 6.81 -51.93 -0.35 0.16 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 348.84 15.07 5.26 5.26 Total: -1.00 -33.57 348.84 -7.85 -41.42 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.33 Total: 6.79 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.13 Total: 1.89 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.12 Total: -49.03 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.74 Total: -22.81 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.57 -7.85 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343988684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.917 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds