Wall clock time and date at job start Tue Mar 31 2020 03:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34232 * 116.99793 * 2 1 4 4 O 1.20826 * 120.00274 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99733 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47020 * 179.97438 * 5 3 2 7 7 C 1.37103 * 119.99941 * 97.87964 * 6 5 3 8 8 H 1.08001 * 120.00158 * 157.49730 * 7 6 5 9 9 C 1.38951 * 120.00220 * 337.49990 * 7 6 5 10 10 N 1.31411 * 119.99898 * 349.63801 * 9 7 6 11 11 Si 1.86797 * 120.00240 * 169.63164 * 9 7 6 12 12 H 1.48499 * 109.46898 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46911 * 119.99861 * 11 9 7 14 14 H 1.48493 * 109.47426 * 240.00316 * 11 9 7 15 15 C 1.34776 * 120.00223 * 277.60716 * 6 5 3 16 16 O 1.21291 * 119.99695 * 0.02562 * 15 6 5 17 17 C 1.50698 * 119.99930 * 179.97438 * 15 6 5 18 18 N 1.46902 * 109.46823 * 179.97438 * 17 15 6 19 19 C 1.47013 * 111.00427 * 293.63374 * 18 17 15 20 20 C 1.53095 * 109.26206 * 177.60889 * 19 18 17 21 21 O 1.43015 * 109.25906 * 56.84740 * 20 19 18 22 22 C 1.43011 * 113.74037 * 301.33588 * 21 20 19 23 23 C 1.47015 * 111.00083 * 169.99743 * 18 17 15 24 24 H 1.08994 * 109.46600 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47120 * 299.99993 * 1 2 3 26 26 H 1.08998 * 109.46784 * 60.00194 * 1 2 3 27 27 H 1.08996 * 109.47243 * 59.99950 * 5 3 2 28 28 H 1.09003 * 109.46904 * 299.99731 * 5 3 2 29 29 H 0.96997 * 120.00698 * 179.97438 * 10 9 7 30 30 H 1.09001 * 109.47531 * 299.99483 * 17 15 6 31 31 H 1.08996 * 109.47083 * 60.00453 * 17 15 6 32 32 H 1.09000 * 109.50457 * 297.55037 * 19 18 17 33 33 H 1.09005 * 109.50280 * 57.67287 * 19 18 17 34 34 H 1.09005 * 109.50334 * 296.91430 * 20 19 18 35 35 H 1.09002 * 109.54304 * 176.80934 * 20 19 18 36 36 H 1.09012 * 109.50366 * 298.73219 * 22 21 20 37 37 H 1.08997 * 109.54592 * 178.62743 * 22 21 20 38 38 H 1.08991 * 109.51134 * 302.33005 * 23 18 17 39 39 H 1.09006 * 109.50354 * 62.41873 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.3326 3.2913 1.1748 8 1 4.9661 4.1659 1.1606 9 6 3.8734 2.7858 2.3848 10 7 2.9461 1.8547 2.3984 11 14 4.5741 3.4295 3.9923 12 1 5.5969 4.4673 3.7060 13 1 3.4824 4.0224 4.8059 14 1 5.1995 2.3112 4.7428 15 6 4.0242 3.3696 -1.1582 16 8 3.7181 2.8273 -2.1990 17 6 4.4509 4.8149 -1.1585 18 7 4.4141 5.3359 -2.5315 19 6 5.4261 4.6791 -3.3717 20 6 5.3133 5.2073 -4.8042 21 8 5.4578 6.6301 -4.7951 22 6 4.4879 7.3021 -3.9871 23 6 4.5922 6.7951 -2.5463 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9557 0.7810 -0.8908 28 1 3.9564 0.7806 0.8892 29 1 2.6257 1.5015 3.2431 30 1 3.7731 5.3941 -0.5315 31 1 5.4651 4.8943 -0.7673 32 1 6.4202 4.8963 -2.9808 33 1 5.2598 3.6019 -3.3668 34 1 4.3383 4.9430 -5.2138 35 1 6.0980 4.7657 -5.4185 36 1 3.4888 7.0988 -4.3730 37 1 4.6752 8.3756 -4.0097 38 1 3.8173 7.2626 -1.9389 39 1 5.5728 7.0462 -2.1416 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345335994.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:29 Heat of formation + Delta-G solvation = -136.181903 kcal Electronic energy + Delta-G solvation = -24063.520210 eV Core-core repulsion = 20393.658564 eV Total energy + Delta-G solvation = -3669.861646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -39.66059 -39.16608 -38.09726 -35.65522 -34.89647 -34.50399 -31.60227 -30.90428 -29.44218 -27.96431 -26.29555 -25.03805 -23.80140 -23.69006 -20.44836 -20.03636 -19.23758 -17.19910 -16.56017 -16.48559 -15.90947 -15.82887 -15.48208 -15.19592 -14.89037 -14.82626 -14.52957 -14.32579 -13.81160 -13.51546 -13.17180 -12.62058 -12.53210 -12.38389 -11.94978 -11.52827 -11.48918 -11.34521 -11.28459 -11.14207 -10.87578 -10.77588 -10.64722 -10.45426 -10.30349 -9.80784 -9.62181 -9.48937 -9.03455 -8.58649 -7.95472 -7.86563 -6.51818 -4.10644 3.03756 3.13914 3.17406 3.47638 3.71333 3.91679 3.99855 4.05540 4.13622 4.76699 4.96598 5.11663 5.27723 5.32270 5.39080 5.51982 5.70956 5.75795 5.79259 5.84090 5.91493 5.95636 5.97022 5.99186 6.17806 6.21800 6.29998 6.33254 6.44706 6.70972 7.20020 7.24989 7.34598 7.43015 7.47916 7.61213 8.19880 8.93946 9.12713 9.34018 9.74454 10.54803 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.015969 B = 0.005737 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.921788 B = 4879.433956 C = 6141.541874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.486 3.514 4 O -0.502 6.502 5 C 0.160 3.840 6 N -0.434 5.434 7 C -0.333 4.333 8 H 0.101 0.899 9 C 0.038 3.962 10 N -0.877 5.877 11 Si 0.930 3.070 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.279 1.279 15 C 0.478 3.522 16 O -0.584 6.584 17 C 0.060 3.940 18 N -0.519 5.519 19 C 0.016 3.984 20 C 0.067 3.933 21 O -0.393 6.393 22 C 0.067 3.933 23 C 0.018 3.982 24 H 0.085 0.915 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.128 0.872 29 H 0.273 0.727 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 2.659 -4.763 6.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.328 3.672 4 O -0.387 6.387 5 C 0.034 3.966 6 N -0.154 5.154 7 C -0.461 4.461 8 H 0.118 0.882 9 C -0.166 4.166 10 N -0.516 5.516 11 Si 0.757 3.243 12 H -0.193 1.193 13 H -0.207 1.207 14 H -0.205 1.205 15 C 0.267 3.733 16 O -0.468 6.468 17 C -0.070 4.070 18 N -0.245 5.245 19 C -0.112 4.112 20 C -0.010 4.010 21 O -0.312 6.312 22 C -0.010 4.010 23 C -0.111 4.111 24 H 0.104 0.896 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.145 0.855 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.773 2.580 -5.413 6.253 hybrid contribution 0.421 0.411 1.805 1.899 sum 2.195 2.991 -3.608 5.175 Atomic orbital electron populations 1.22924 0.78794 1.01767 1.01600 1.86459 1.21614 1.35566 1.85719 1.23972 0.92334 0.80494 0.70441 1.90513 1.66542 1.36400 1.45212 1.20455 0.87097 0.85559 1.03444 1.43341 1.57504 1.08081 1.06506 1.19660 1.29684 1.14032 0.82693 0.88174 1.25283 0.94796 0.96685 0.99876 1.69726 1.25949 1.28254 1.27634 0.85815 0.78671 0.78738 0.81120 1.19307 1.20697 1.20456 1.19994 0.81737 0.87665 0.83897 1.90498 1.53721 1.70465 1.32111 1.21743 1.00943 0.95497 0.88860 1.61823 1.49048 1.02866 1.10742 1.22918 0.92452 1.02412 0.93430 1.22659 1.01967 0.80321 0.96056 1.87908 1.54717 1.19459 1.69088 1.22609 0.92731 0.96341 0.89366 1.22778 1.00805 0.89426 0.98085 0.89632 0.92700 0.93151 0.90531 0.85459 0.91672 0.88275 0.92988 0.95094 0.87318 0.92212 0.88896 0.92368 0.88878 0.89761 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.21 10.57 -39.26 -0.41 -8.63 16 3 C 0.49 12.14 6.12 36.01 0.22 12.36 16 4 O -0.50 -14.07 15.76 -18.75 -0.30 -14.36 16 5 C 0.16 3.82 5.10 -5.19 -0.03 3.79 16 6 N -0.43 -10.72 2.20 -116.10 -0.26 -10.97 16 7 C -0.33 -8.12 9.09 -14.93 -0.14 -8.26 16 8 H 0.10 2.28 6.58 -52.49 -0.35 1.93 16 9 C 0.04 0.92 5.10 -17.47 -0.09 0.83 16 10 N -0.88 -22.38 9.00 55.50 0.50 -21.88 16 11 Si 0.93 18.94 29.57 -169.99 -5.03 13.91 16 12 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 13 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 15 C 0.48 11.44 7.04 -10.99 -0.08 11.36 16 16 O -0.58 -14.97 14.06 5.55 0.08 -14.89 16 17 C 0.06 1.20 3.97 -4.98 -0.02 1.18 16 18 N -0.52 -9.54 4.46 -235.76 -1.05 -10.59 16 19 C 0.02 0.27 5.29 -3.71 -0.02 0.25 16 20 C 0.07 0.99 7.01 37.21 0.26 1.25 16 21 O -0.39 -5.94 10.83 -35.23 -0.38 -6.32 16 22 C 0.07 0.89 7.01 37.21 0.26 1.15 16 23 C 0.02 0.26 5.64 -3.71 -0.02 0.24 16 24 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 26 H 0.05 0.88 8.13 -51.93 -0.42 0.45 16 27 H 0.08 1.70 7.66 -51.93 -0.40 1.31 16 28 H 0.13 3.03 6.32 -51.93 -0.33 2.70 16 29 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 30 H 0.10 2.01 8.00 -51.93 -0.42 1.59 16 31 H 0.05 0.98 7.62 -51.93 -0.40 0.59 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.11 2.10 5.88 -51.93 -0.31 1.79 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 321.42 15.07 4.84 4.84 Total: -1.00 -31.28 321.42 -6.13 -37.41 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.55 Total: 5.48 kcal Atomic # 6 Polarization: 24.58 SS G_CDS: 1.42 Total: 26.00 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -0.81 Total: -43.44 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -1.01 Total: -44.20 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.28 -6.13 -37.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345335994.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.772 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds