Wall clock time and date at job start Tue Mar 31 2020 02:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99611 * 2 1 4 4 H 1.48502 * 109.46911 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47138 * 299.99898 * 3 2 1 6 6 H 1.48499 * 109.47536 * 60.00174 * 3 2 1 7 7 C 1.37875 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00374 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99569 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46803 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00093 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99892 * 0.02562 * 11 10 9 13 13 C 1.50704 * 120.00151 * 180.02562 * 11 10 9 14 14 N 1.46898 * 109.47117 * 180.02562 * 13 11 10 15 15 C 1.46855 * 110.99802 * 294.21010 * 14 13 11 16 16 C 1.53035 * 109.52058 * 174.16298 * 15 14 13 17 17 H 1.09006 * 109.53347 * 179.14147 * 16 15 14 18 18 O 1.42903 * 109.50396 * 299.23105 * 16 15 14 19 19 C 1.53112 * 109.28370 * 59.17502 * 16 15 14 20 20 C 1.53122 * 109.16074 * 302.34781 * 19 16 15 21 21 H 1.08995 * 109.50122 * 297.67121 * 20 19 16 22 22 C 1.50705 * 109.50029 * 177.59461 * 20 19 16 23 23 O 1.20820 * 120.00421 * 359.97438 * 22 20 19 24 24 O 1.34229 * 119.99551 * 180.02562 * 22 20 19 25 25 C 1.46843 * 111.00369 * 170.00020 * 14 13 11 26 26 H 0.96998 * 120.00323 * 359.97438 * 1 2 3 27 27 H 1.08991 * 109.47240 * 59.99750 * 9 7 2 28 28 H 1.09004 * 109.46808 * 299.99429 * 9 7 2 29 29 H 0.97004 * 120.00429 * 0.02562 * 10 9 7 30 30 H 1.09001 * 109.47211 * 60.00354 * 13 11 10 31 31 H 1.09004 * 109.46996 * 299.99852 * 13 11 10 32 32 H 1.08999 * 109.46159 * 54.14710 * 15 14 13 33 33 H 1.08993 * 109.46151 * 294.17348 * 15 14 13 34 34 H 0.96700 * 114.00311 * 299.80985 * 18 16 15 35 35 H 1.09009 * 109.52200 * 62.25142 * 19 16 15 36 36 H 1.09000 * 109.52689 * 182.43962 * 19 16 15 37 37 H 0.96703 * 117.00136 * 179.97438 * 24 22 20 38 38 H 1.08998 * 109.46296 * 65.81569 * 25 14 13 39 39 H 1.09004 * 109.45178 * 305.84872 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 1.7539 -4.8833 -0.0033 12 8 0.5616 -5.1050 -0.0035 13 6 2.7333 -6.0287 -0.0038 14 7 1.9988 -7.3009 -0.0050 15 6 1.2483 -7.4765 1.2450 16 6 0.3841 -8.7360 1.1500 17 1 -0.1615 -8.8749 2.0834 18 8 -0.5432 -8.5981 0.0715 19 6 1.2841 -9.9489 0.8985 20 6 2.0902 -9.7194 -0.3830 21 1 1.4099 -9.6304 -1.2298 22 6 3.0220 -10.8827 -0.6062 23 8 3.0406 -11.8011 0.1785 24 8 3.8320 -10.8978 -1.6764 25 6 2.9050 -8.4316 -0.2435 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8881 29 1 3.1568 -3.4354 -0.0022 30 1 3.3598 -5.9714 0.8863 31 1 3.3600 -5.9706 -0.8937 32 1 0.6092 -6.6091 1.4097 33 1 1.9459 -7.5767 2.0764 34 1 -1.1462 -7.8479 0.1647 35 1 1.9656 -10.0775 1.7395 36 1 0.6691 -10.8419 0.7870 37 1 4.4122 -11.6649 -1.7771 38 1 3.5949 -8.5272 0.5949 39 1 3.4690 -8.2577 -1.1599 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401829738.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:32 Heat of formation + Delta-G solvation = -175.920173 kcal Electronic energy + Delta-G solvation = -22992.712616 eV Core-core repulsion = 19321.127789 eV Total energy + Delta-G solvation = -3671.584827 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.86843 -39.52685 -38.23613 -36.40328 -35.72676 -34.21669 -33.18275 -32.34920 -30.27269 -28.46059 -26.49271 -25.09585 -23.35008 -22.36193 -21.56651 -19.86293 -19.68041 -18.30872 -17.42970 -17.00439 -16.76940 -16.11406 -15.92067 -15.34670 -15.13778 -15.00613 -14.57672 -14.23953 -14.18195 -13.75198 -13.39353 -13.28358 -13.12068 -12.57916 -12.30858 -11.99476 -11.85602 -11.80741 -11.47910 -11.28627 -11.17873 -10.98589 -10.93197 -10.86698 -10.57451 -10.33014 -9.80065 -9.40747 -9.04293 -8.76284 -8.28756 -7.89277 -6.19603 -4.26491 1.92301 2.73937 3.21374 3.28633 3.31366 3.33316 3.57471 4.13361 4.28113 4.40174 4.43571 4.65589 4.77925 4.91722 5.08874 5.16716 5.17878 5.27214 5.33216 5.39226 5.48574 5.57037 5.61477 5.62280 5.80488 5.93295 6.06004 6.23793 6.85881 6.97499 7.28786 7.41306 7.48943 7.62226 7.64535 7.84166 7.94230 8.60048 8.75971 9.08116 9.40487 10.90580 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.034500 B = 0.003087 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.408367 B = 9067.494698 C = 9607.479796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.252 3.748 10 N -0.714 5.714 11 C 0.500 3.500 12 O -0.539 6.539 13 C 0.035 3.965 14 N -0.505 5.505 15 C 0.012 3.988 16 C 0.115 3.885 17 H 0.063 0.937 18 O -0.555 6.555 19 C -0.098 4.098 20 C -0.072 4.072 21 H 0.129 0.871 22 C 0.486 3.514 23 O -0.518 6.518 24 O -0.514 6.514 25 C 0.067 3.933 26 H 0.265 0.735 27 H 0.027 0.973 28 H 0.026 0.974 29 H 0.390 0.610 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.035 0.965 34 H 0.386 0.614 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.408 0.592 38 H 0.036 0.964 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.321 -18.960 0.694 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.363 5.363 11 C 0.284 3.716 12 O -0.417 6.417 13 C -0.096 4.096 14 N -0.229 5.229 15 C -0.116 4.116 16 C 0.055 3.945 17 H 0.081 0.919 18 O -0.361 6.361 19 C -0.136 4.136 20 C -0.091 4.091 21 H 0.147 0.853 22 C 0.328 3.672 23 O -0.406 6.406 24 O -0.325 6.325 25 C -0.061 4.061 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.222 0.778 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.054 0.946 34 H 0.235 0.765 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.267 0.733 38 H 0.054 0.946 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.004 -19.382 0.359 20.294 hybrid contribution 1.680 1.016 0.794 2.118 sum 7.684 -18.366 1.153 19.942 Atomic orbital electron populations 1.69979 1.06100 1.27219 1.48956 1.24952 0.94913 0.99468 0.94694 0.86367 0.79827 0.82980 0.77767 1.19644 1.20776 1.20815 1.21267 0.93295 0.90480 1.53129 0.91878 1.19086 0.88253 0.81892 0.97686 1.46463 1.11121 1.06099 1.72655 1.20227 0.89512 0.84029 0.77835 1.90598 1.16623 1.84500 1.49999 1.22033 0.95513 0.89310 1.02765 1.61396 1.25682 0.99932 1.35900 1.23118 0.98073 1.00897 0.89501 1.21680 0.89624 0.93013 0.90142 0.91905 1.86394 1.49656 1.53842 1.46255 1.21533 0.97630 0.98355 0.96055 1.20990 0.95424 0.90149 1.02562 0.85320 1.23580 0.78477 0.87679 0.77432 1.90710 1.66619 1.37864 1.45398 1.84577 1.51432 1.50185 1.46302 1.21994 0.93205 0.89142 1.01800 0.92485 0.95485 0.95643 0.77805 0.92402 0.88052 0.87485 0.94644 0.76545 0.90099 0.90172 0.73327 0.94571 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -14.41 9.28 -34.44 -0.32 -14.73 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.45 5.43 -5.19 -0.03 6.43 16 10 N -0.71 -14.26 5.55 -61.47 -0.34 -14.60 16 11 C 0.50 9.28 7.50 -10.98 -0.08 9.20 16 12 O -0.54 -11.87 14.32 5.56 0.08 -11.79 16 13 C 0.03 0.46 5.45 -4.98 -0.03 0.44 16 14 N -0.50 -6.63 4.28 -236.12 -1.01 -7.64 16 15 C 0.01 0.15 4.77 -3.83 -0.02 0.13 16 16 C 0.12 1.30 3.81 -26.66 -0.10 1.20 16 17 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 18 O -0.56 -7.19 12.65 -35.23 -0.45 -7.64 16 19 C -0.10 -1.04 4.31 -26.61 -0.11 -1.16 16 20 C -0.07 -0.76 2.64 -91.69 -0.24 -1.00 16 21 H 0.13 1.50 7.80 -51.93 -0.40 1.10 16 22 C 0.49 4.99 7.63 36.01 0.27 5.26 16 23 O -0.52 -6.60 16.73 -18.75 -0.31 -6.92 16 24 O -0.51 -4.01 13.35 -39.26 -0.52 -4.54 16 25 C 0.07 0.71 4.67 -3.84 -0.02 0.69 16 26 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.39 6.62 8.32 -40.82 -0.34 6.28 16 30 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.10 1.15 7.99 -51.93 -0.41 0.74 16 32 H 0.11 1.65 5.78 -51.93 -0.30 1.35 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.39 4.50 9.08 45.56 0.41 4.91 16 35 H 0.08 0.81 8.04 -51.92 -0.42 0.39 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.41 1.42 9.10 45.56 0.41 1.83 16 38 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.88 8.01 -51.93 -0.42 0.46 16 LS Contribution 328.98 15.07 4.96 4.96 Total: -1.00 -33.86 328.98 -6.61 -40.47 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -3.96 Total: 9.04 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -0.77 Total: 8.09 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.62 Total: -47.17 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -1.20 Total: -30.89 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.86 -6.61 -40.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401829738.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.448 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds