Wall clock time and date at job start Tue Mar 31 2020 02:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99611 * 2 1 4 4 H 1.48502 * 109.46911 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47138 * 299.99898 * 3 2 1 6 6 H 1.48499 * 109.47536 * 60.00174 * 3 2 1 7 7 C 1.37875 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00374 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99569 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46803 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00093 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99892 * 0.02562 * 11 10 9 13 13 C 1.50704 * 120.00151 * 180.02562 * 11 10 9 14 14 N 1.46898 * 109.47117 * 180.02562 * 13 11 10 15 15 C 1.46855 * 110.99802 * 294.21010 * 14 13 11 16 16 C 1.53035 * 109.52058 * 174.16298 * 15 14 13 17 17 H 1.09006 * 109.53347 * 179.14147 * 16 15 14 18 18 O 1.42903 * 109.50396 * 299.23105 * 16 15 14 19 19 C 1.53112 * 109.28370 * 59.17502 * 16 15 14 20 20 C 1.53122 * 109.16074 * 302.34781 * 19 16 15 21 21 H 1.08995 * 109.50122 * 297.67121 * 20 19 16 22 22 C 1.50705 * 109.50029 * 177.59461 * 20 19 16 23 23 O 1.20820 * 120.00421 * 359.97438 * 22 20 19 24 24 O 1.34229 * 119.99551 * 180.02562 * 22 20 19 25 25 C 1.46843 * 111.00369 * 170.00020 * 14 13 11 26 26 H 0.96998 * 120.00323 * 359.97438 * 1 2 3 27 27 H 1.08991 * 109.47240 * 59.99750 * 9 7 2 28 28 H 1.09004 * 109.46808 * 299.99429 * 9 7 2 29 29 H 0.97004 * 120.00429 * 0.02562 * 10 9 7 30 30 H 1.09001 * 109.47211 * 60.00354 * 13 11 10 31 31 H 1.09004 * 109.46996 * 299.99852 * 13 11 10 32 32 H 1.08999 * 109.46159 * 54.14710 * 15 14 13 33 33 H 1.08993 * 109.46151 * 294.17348 * 15 14 13 34 34 H 0.96700 * 114.00311 * 299.80985 * 18 16 15 35 35 H 1.09009 * 109.52200 * 62.25142 * 19 16 15 36 36 H 1.09000 * 109.52689 * 182.43962 * 19 16 15 37 37 H 0.96703 * 117.00136 * 179.97438 * 24 22 20 38 38 H 1.08998 * 109.46296 * 65.81569 * 25 14 13 39 39 H 1.09004 * 109.45178 * 305.84872 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 1.7539 -4.8833 -0.0033 12 8 0.5616 -5.1050 -0.0035 13 6 2.7333 -6.0287 -0.0038 14 7 1.9988 -7.3009 -0.0050 15 6 1.2483 -7.4765 1.2450 16 6 0.3841 -8.7360 1.1500 17 1 -0.1615 -8.8749 2.0834 18 8 -0.5432 -8.5981 0.0715 19 6 1.2841 -9.9489 0.8985 20 6 2.0902 -9.7194 -0.3830 21 1 1.4099 -9.6304 -1.2298 22 6 3.0220 -10.8827 -0.6062 23 8 3.0406 -11.8011 0.1785 24 8 3.8320 -10.8978 -1.6764 25 6 2.9050 -8.4316 -0.2435 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8881 29 1 3.1568 -3.4354 -0.0022 30 1 3.3598 -5.9714 0.8863 31 1 3.3600 -5.9706 -0.8937 32 1 0.6092 -6.6091 1.4097 33 1 1.9459 -7.5767 2.0764 34 1 -1.1462 -7.8479 0.1647 35 1 1.9656 -10.0775 1.7395 36 1 0.6691 -10.8419 0.7870 37 1 4.4122 -11.6649 -1.7771 38 1 3.5949 -8.5272 0.5949 39 1 3.4690 -8.2577 -1.1599 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401829738.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:31 Heat of formation + Delta-G solvation = -206.131676 kcal Electronic energy + Delta-G solvation = -22994.022685 eV Core-core repulsion = 19321.127789 eV Total energy + Delta-G solvation = -3672.894896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.70846 -40.72108 -39.46507 -37.14492 -36.75731 -36.03602 -34.31909 -34.13437 -31.20395 -30.03857 -28.03074 -25.98978 -24.80575 -23.70753 -22.54546 -21.27208 -20.70726 -19.12442 -18.86954 -18.14057 -17.72735 -17.49608 -17.06261 -16.86196 -16.36452 -16.18245 -15.96334 -15.52724 -15.32814 -14.80433 -14.56624 -14.26593 -14.16534 -14.00832 -13.95169 -13.63486 -13.03498 -12.86902 -12.76758 -12.55312 -12.46897 -12.27669 -12.20481 -12.03231 -11.79832 -11.49556 -11.42964 -10.79198 -10.75580 -10.53364 -9.74668 -9.25244 -8.27621 -6.43540 1.13582 1.44509 1.45133 1.58474 1.85901 2.00831 2.31854 2.49980 2.99647 3.07625 3.42277 3.56808 3.78662 3.91373 3.95654 4.13465 4.25658 4.33003 4.40896 4.45736 4.57189 4.63892 4.70591 4.75928 4.90808 5.05098 5.14936 5.16187 5.29085 5.52656 5.59730 5.73443 5.87881 5.92168 6.05570 6.68591 6.88416 6.99070 7.00532 7.26335 7.58525 8.84583 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.034500 B = 0.003087 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.408367 B = 9067.494698 C = 9607.479796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.982 3.018 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.270 3.730 10 N -0.711 5.711 11 C 0.495 3.505 12 O -0.579 6.579 13 C 0.049 3.951 14 N -0.526 5.526 15 C 0.015 3.985 16 C 0.114 3.886 17 H 0.077 0.923 18 O -0.570 6.570 19 C -0.094 4.094 20 C -0.071 4.071 21 H 0.116 0.884 22 C 0.497 3.503 23 O -0.545 6.545 24 O -0.508 6.508 25 C 0.071 3.929 26 H 0.268 0.732 27 H -0.014 1.014 28 H -0.013 1.013 29 H 0.407 0.593 30 H 0.087 0.913 31 H 0.129 0.871 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.388 0.612 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.429 0.571 38 H 0.052 0.948 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.268 -19.404 0.657 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.592 4.592 8 H 0.101 0.899 9 C 0.147 3.853 10 N -0.362 5.362 11 C 0.282 3.718 12 O -0.459 6.459 13 C -0.082 4.082 14 N -0.250 5.250 15 C -0.113 4.113 16 C 0.055 3.945 17 H 0.095 0.905 18 O -0.377 6.377 19 C -0.132 4.132 20 C -0.090 4.090 21 H 0.134 0.866 22 C 0.341 3.659 23 O -0.436 6.436 24 O -0.321 6.321 25 C -0.056 4.056 26 H 0.077 0.923 27 H 0.004 0.996 28 H 0.005 0.995 29 H 0.243 0.757 30 H 0.105 0.895 31 H 0.147 0.853 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.236 0.764 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.291 0.709 38 H 0.071 0.929 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.016 -19.869 0.305 21.821 hybrid contribution 0.726 1.068 0.768 1.502 sum 9.741 -18.801 1.073 21.202 Atomic orbital electron populations 1.70138 1.08224 1.28415 1.50192 1.26040 0.95749 1.03836 0.93997 0.85144 0.79161 0.77523 0.77585 1.17603 1.20613 1.20570 1.21672 0.94316 0.90691 1.52507 0.89852 1.18476 0.88636 0.84265 0.93962 1.46189 1.11115 1.05557 1.73341 1.21267 0.90049 0.84608 0.75906 1.90590 1.18987 1.85087 1.51225 1.21952 0.93918 0.86920 1.05394 1.61313 1.26803 1.00629 1.36299 1.23010 0.98114 1.00023 0.90129 1.21804 0.89490 0.92860 0.90343 0.90504 1.86370 1.50073 1.54003 1.47256 1.21500 0.97561 0.97540 0.96571 1.20911 0.95449 0.90674 1.01985 0.86606 1.23334 0.78275 0.86911 0.77422 1.90710 1.67563 1.38752 1.46529 1.84525 1.51266 1.51382 1.44958 1.22017 0.92809 0.87773 1.03030 0.92327 0.99629 0.99485 0.75735 0.89514 0.85276 0.90772 0.93004 0.76373 0.89137 0.90639 0.70946 0.92941 0.87877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.98 41.67 29.54 68.60 2.03 43.70 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.55 -29.46 9.28 25.60 0.24 -29.22 16 8 H 0.08 4.00 7.60 -2.91 -0.02 3.97 16 9 C 0.27 14.37 5.43 85.64 0.46 14.84 16 10 N -0.71 -28.36 5.55 -466.79 -2.59 -30.95 16 11 C 0.49 18.31 7.50 87.66 0.66 18.97 16 12 O -0.58 -26.44 14.32 -3.01 -0.04 -26.48 16 13 C 0.05 1.17 5.45 85.56 0.47 1.64 16 14 N -0.53 -12.85 4.28 -900.94 -3.86 -16.70 16 15 C 0.02 0.38 4.77 86.32 0.41 0.79 16 16 C 0.11 2.52 3.81 30.64 0.12 2.64 16 17 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 18 O -0.57 -14.98 12.65 -148.98 -1.88 -16.86 16 19 C -0.09 -1.87 4.31 30.67 0.13 -1.73 16 20 C -0.07 -1.37 2.64 -11.49 -0.03 -1.40 16 21 H 0.12 2.58 7.80 -2.39 -0.02 2.56 16 22 C 0.50 9.10 7.63 71.24 0.54 9.64 16 23 O -0.55 -12.90 16.73 21.98 0.37 -12.53 16 24 O -0.51 -6.49 13.35 -51.41 -0.69 -7.17 16 25 C 0.07 1.30 4.67 86.32 0.40 1.70 16 26 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 27 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 28 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 29 H 0.41 13.19 8.32 -92.71 -0.77 12.42 16 30 H 0.09 1.65 8.12 -2.39 -0.02 1.63 16 31 H 0.13 2.44 7.99 -2.39 -0.02 2.43 16 32 H 0.07 2.35 5.78 -2.39 -0.01 2.33 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 34 H 0.39 9.57 9.08 -74.06 -0.67 8.90 16 35 H 0.09 1.63 8.04 -2.38 -0.02 1.61 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.43 1.70 9.10 -74.06 -0.67 1.03 16 38 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.10 1.63 8.01 -2.38 -0.02 1.61 16 Total: -1.00 -75.58 328.98 -3.53 -79.11 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -1.02 Total: 24.60 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 3.87 Total: 18.49 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -6.16 Total: -102.85 kcal Atomic # 8 Polarization: -60.80 SS G_CDS: -2.25 Total: -63.05 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -75.58 -3.53 -79.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401829738.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.023 kcal (2) G-P(sol) polarization free energy of solvation -75.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds