Wall clock time and date at job start Tue Mar 31 2020 03:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.51120 * 2 1 4 4 C 1.53291 * 109.50843 * 120.09886 * 2 1 3 5 5 N 1.47154 * 108.38673 * 67.62375 * 4 2 1 6 6 C 1.34774 * 120.98550 * 230.51103 * 5 4 2 7 7 O 1.21592 * 119.99540 * 5.20374 * 6 5 4 8 8 N 1.34769 * 120.00285 * 184.93132 * 6 5 4 9 9 C 1.46498 * 120.00223 * 175.29866 * 8 6 5 10 10 C 1.53000 * 109.47377 * 179.97438 * 9 8 6 11 11 C 1.50704 * 109.47362 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99624 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00014 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00218 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99917 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46811 * 90.00019 * 15 13 11 17 17 H 1.48499 * 109.47026 * 209.99806 * 15 13 11 18 18 H 1.48500 * 109.47006 * 330.00157 * 15 13 11 19 19 C 1.47152 * 118.03306 * 50.78321 * 5 4 2 20 20 C 1.53712 * 108.16134 * 309.15736 * 19 5 4 21 21 H 1.09000 * 109.66461 * 292.57146 * 20 19 5 22 22 C 1.53004 * 109.44257 * 172.37501 * 20 19 5 23 23 O 1.42903 * 109.47168 * 175.38912 * 22 20 19 24 24 O 1.42957 * 109.14655 * 52.54153 * 20 19 5 25 25 H 1.09003 * 109.47512 * 299.90349 * 1 2 3 26 26 H 1.09006 * 109.46828 * 59.90111 * 1 2 3 27 27 H 1.09004 * 109.47513 * 179.89610 * 1 2 3 28 28 H 1.09004 * 109.47069 * 180.09887 * 3 2 1 29 29 H 1.09000 * 109.47081 * 300.09601 * 3 2 1 30 30 H 1.08997 * 109.47083 * 60.10075 * 3 2 1 31 31 H 1.08997 * 109.68654 * 307.89666 * 4 2 1 32 32 H 1.09006 * 109.71373 * 187.36012 * 4 2 1 33 33 H 0.97007 * 120.00407 * 355.29242 * 8 6 5 34 34 H 1.09004 * 109.46829 * 299.99570 * 9 8 6 35 35 H 1.08999 * 109.47609 * 59.99583 * 9 8 6 36 36 H 1.09000 * 109.47468 * 300.00364 * 10 9 8 37 37 H 1.09006 * 109.47120 * 60.00046 * 10 9 8 38 38 H 0.96989 * 119.99974 * 179.97438 * 14 13 11 39 39 H 1.08998 * 109.68308 * 68.93778 * 19 5 4 40 40 H 1.09003 * 109.67984 * 189.49672 * 19 5 4 41 41 H 1.09001 * 109.47207 * 295.39228 * 22 20 19 42 42 H 1.09000 * 109.47104 * 55.38905 * 22 20 19 43 43 H 0.96701 * 114.00064 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 6 2.0419 -0.7246 1.2501 5 7 1.6959 -2.1502 1.1346 6 6 1.0715 -2.7962 2.1392 7 8 0.7011 -2.1807 3.1203 8 7 0.8527 -4.1233 2.0540 9 6 0.2677 -4.8436 3.1876 10 6 0.1256 -6.3249 2.8322 11 6 -0.4757 -7.0660 3.9986 12 1 -0.7313 -6.5335 4.9027 13 6 -0.6994 -8.4237 3.9114 14 7 -0.3876 -9.0722 2.8105 15 14 -1.4453 -9.3421 5.3569 16 1 -2.9252 -9.3416 5.2332 17 1 -0.9495 -10.7419 5.3630 18 1 -1.0543 -8.6728 6.6236 19 6 2.0571 -2.8512 -0.1077 20 6 1.5396 -2.0216 -1.2938 21 1 0.4496 -2.0289 -1.2986 22 6 2.0614 -2.6214 -2.6011 23 8 1.4949 -1.9170 -3.7079 24 8 2.0075 -0.6769 -1.1651 25 1 -0.3634 0.5123 0.8908 26 1 -0.3633 0.5154 -0.8892 27 1 -0.3634 -1.0277 -0.0019 28 1 3.1311 1.4414 -0.0018 29 1 1.6766 1.9567 -0.8891 30 1 1.6795 1.9557 0.8909 31 1 1.5704 -0.3031 2.1378 32 1 3.1240 -0.6143 1.3218 33 1 1.0825 -4.6016 1.2420 34 1 0.9155 -4.7389 4.0580 35 1 -0.7146 -4.4288 3.4139 36 1 -0.5224 -6.4293 1.9620 37 1 1.1077 -6.7401 2.6058 38 1 -0.5446 -10.0273 2.7493 39 1 3.1407 -2.9511 -0.1711 40 1 1.5955 -3.8385 -0.1197 41 1 3.1475 -2.5347 -2.6326 42 1 1.7791 -3.6727 -2.6566 43 1 1.7827 -2.2441 -4.5712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422191932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:47 Heat of formation + Delta-G solvation = -149.717634 kcal Electronic energy + Delta-G solvation = -23713.594255 eV Core-core repulsion = 20178.978750 eV Total energy + Delta-G solvation = -3534.615505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.88470 -40.09091 -37.71252 -36.67832 -35.97449 -34.94944 -34.57925 -31.59030 -31.05290 -28.42171 -27.89536 -26.90276 -25.90606 -23.06448 -22.83778 -21.62256 -20.44891 -19.36373 -18.55270 -18.31047 -17.89452 -17.17087 -16.93276 -16.52203 -16.07895 -15.94853 -15.70584 -15.43714 -15.09011 -14.96386 -14.46755 -14.33175 -14.25711 -13.62922 -13.37554 -13.19252 -13.09159 -12.95939 -12.92317 -12.83041 -12.52785 -12.35785 -12.26039 -12.10435 -11.73191 -11.64042 -11.43016 -11.20856 -11.08993 -10.87821 -10.60672 -10.18098 -9.47338 -8.24294 -6.34370 1.41495 1.42583 1.47709 1.54989 2.02123 2.40240 2.53096 2.82755 3.10734 3.18754 3.62640 3.79840 3.84320 3.91922 4.06159 4.16792 4.25462 4.41059 4.44317 4.49466 4.50511 4.53755 4.62784 4.71981 4.73533 4.84030 4.86247 4.89299 4.95957 5.14050 5.22134 5.26786 5.35867 5.48792 5.57661 5.75407 5.83159 6.16246 6.16533 6.78106 6.87215 6.93886 7.34871 7.45537 8.87628 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.023543 B = 0.003480 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.039359 B = 8044.030332 C = 8913.923924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 C -0.130 4.130 4 C 0.105 3.895 5 N -0.629 5.629 6 C 0.703 3.297 7 O -0.631 6.631 8 N -0.733 5.733 9 C 0.160 3.840 10 C 0.025 3.975 11 C -0.547 4.547 12 H 0.058 0.942 13 C 0.009 3.991 14 N -0.925 5.925 15 Si 0.964 3.036 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.267 1.267 19 C 0.083 3.917 20 C 0.074 3.926 21 H 0.058 0.942 22 C 0.087 3.913 23 O -0.588 6.588 24 O -0.368 6.368 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.404 0.596 34 H 0.045 0.955 35 H 0.043 0.957 36 H 0.008 0.992 37 H 0.010 0.990 38 H 0.266 0.734 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.743 16.286 -13.083 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.060 3.940 3 C -0.188 4.188 4 C -0.018 4.018 5 N -0.366 5.366 6 C 0.405 3.595 7 O -0.512 6.512 8 N -0.390 5.390 9 C 0.036 3.964 10 C -0.013 4.013 11 C -0.585 4.585 12 H 0.077 0.923 13 C -0.190 4.190 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.191 1.191 19 C -0.041 4.041 20 C 0.016 3.984 21 H 0.075 0.925 22 C 0.009 3.991 23 O -0.397 6.397 24 O -0.287 6.287 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.241 0.759 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.027 0.973 37 H 0.029 0.971 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 7.323 16.952 -12.084 22.069 hybrid contribution -0.356 -1.490 0.105 1.536 sum 6.966 15.462 -11.979 20.763 Atomic orbital electron populations 1.22308 0.95751 1.01609 1.03007 1.21993 0.93462 0.94152 0.84436 1.21710 1.02472 0.90868 1.03712 1.22319 1.01167 0.78871 0.99443 1.47226 1.62056 1.11401 1.15930 1.15990 0.78591 0.82035 0.82886 1.90849 1.58886 1.67261 1.34243 1.45393 1.67470 1.06414 1.19674 1.21114 0.96131 0.92204 0.86987 1.19121 0.96365 0.89207 0.96558 1.21447 1.42112 0.93895 1.01053 0.92337 1.25843 0.95804 0.98521 0.98841 1.70047 1.48671 1.09457 1.28312 0.85457 0.78675 0.77624 0.79365 1.19836 1.20462 1.19094 1.22475 1.02682 0.96216 0.82691 1.22595 0.98667 0.83034 0.94151 0.92454 1.22129 0.98065 0.95025 0.83853 1.86468 1.73045 1.62279 1.17923 1.88022 1.71978 1.25080 1.43618 0.91174 0.91168 0.94188 0.90755 0.91040 0.89489 0.89317 0.89541 0.75851 0.93651 0.93885 0.97340 0.97131 0.92520 0.88206 0.88405 0.91095 0.89694 0.74971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 8.09 71.98 0.58 -3.32 16 2 C 0.10 2.11 1.11 -10.70 -0.01 2.10 16 3 C -0.13 -2.02 8.85 71.98 0.64 -1.38 16 4 C 0.10 2.52 5.32 86.35 0.46 2.98 16 5 N -0.63 -17.24 2.53 -834.53 -2.11 -19.35 16 6 C 0.70 25.46 8.31 179.06 1.49 26.95 16 7 O -0.63 -27.70 15.82 -4.01 -0.06 -27.77 16 8 N -0.73 -26.53 5.47 -478.54 -2.62 -29.15 16 9 C 0.16 7.01 5.62 86.38 0.49 7.49 16 10 C 0.03 1.26 5.09 29.85 0.15 1.41 16 11 C -0.55 -30.48 9.11 25.60 0.23 -30.24 16 12 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 13 C 0.01 0.49 5.46 84.65 0.46 0.95 16 14 N -0.93 -53.68 13.29 21.45 0.28 -53.39 16 15 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 C 0.08 1.70 5.89 86.49 0.51 2.21 16 20 C 0.07 1.54 2.69 30.84 0.08 1.62 16 21 H 0.06 1.40 6.25 -2.39 -0.01 1.38 16 22 C 0.09 1.32 6.71 71.98 0.48 1.80 16 23 O -0.59 -10.17 13.63 -144.45 -1.97 -12.14 16 24 O -0.37 -8.33 9.83 -144.45 -1.42 -9.75 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.04 1.08 6.11 -2.39 -0.01 1.06 16 28 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 2.41 7.06 -2.39 -0.02 2.39 16 32 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.40 12.46 6.02 -92.70 -0.56 11.90 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.01 0.43 8.14 -2.39 -0.02 0.42 16 37 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.27 14.49 8.31 -92.72 -0.77 13.72 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.10 1.88 5.76 -2.39 -0.01 1.86 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 43 H 0.40 2.88 9.12 -74.06 -0.68 2.21 16 Total: -1.00 -72.61 345.89 -0.53 -73.13 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -0.22 Total: 20.41 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.56 Total: 12.56 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -4.44 Total: -101.89 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -3.45 Total: -49.66 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -72.61 -0.53 -73.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422191932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.585 kcal (2) G-P(sol) polarization free energy of solvation -72.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds