Wall clock time and date at job start Tue Mar 31 2020 03:36:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86797 * 119.99410 * 2 1
4 4 H 1.48504 * 109.47120 * 239.99972 * 3 2 1
5 5 H 1.48504 * 109.47524 * 359.97438 * 3 2 1
6 6 H 1.48501 * 109.47077 * 119.99940 * 3 2 1
7 7 C 1.37869 * 120.00263 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99828 * 180.02562 * 7 2 1
9 9 C 1.50701 * 120.00027 * 0.02562 * 7 2 1
10 10 N 1.46504 * 109.46923 * 179.97438 * 9 7 2
11 11 C 1.34777 * 119.99854 * 179.97438 * 10 9 7
12 12 O 1.21593 * 119.99953 * 0.02562 * 11 10 9
13 13 N 1.34773 * 120.00097 * 180.27545 * 11 10 9
14 14 C 1.46500 * 120.00431 * 179.72742 * 13 11 10
15 15 H 1.09008 * 109.46846 * 325.00097 * 14 13 11
16 16 C 1.52996 * 109.47098 * 85.00044 * 14 13 11
17 17 C 1.53003 * 109.47152 * 295.00415 * 16 14 13
18 18 O 1.42902 * 109.47246 * 180.02562 * 17 16 14
19 19 C 1.52998 * 109.47391 * 205.00423 * 14 13 11
20 20 C 1.53178 * 109.54476 * 179.82114 * 19 14 13
21 21 C 1.53098 * 109.15959 * 183.24066 * 20 19 14
22 22 O 1.42900 * 109.48789 * 57.47451 * 21 20 19
23 23 C 1.42909 * 114.09796 * 298.89137 * 22 21 20
24 24 C 1.53086 * 109.41376 * 61.15702 * 23 22 21
25 25 H 0.96994 * 120.00789 * 0.02562 * 1 2 3
26 26 H 1.08998 * 109.47477 * 59.99650 * 9 7 2
27 27 H 1.08997 * 109.47150 * 299.99545 * 9 7 2
28 28 H 0.97000 * 120.00410 * 0.02562 * 10 9 7
29 29 H 0.97000 * 120.00112 * 359.73180 * 13 11 10
30 30 H 1.09000 * 109.47157 * 55.00493 * 16 14 13
31 31 H 1.09004 * 109.46885 * 175.00389 * 16 14 13
32 32 H 1.09000 * 109.46777 * 299.99691 * 17 16 14
33 33 H 1.08991 * 109.47261 * 59.99576 * 17 16 14
34 34 H 0.96699 * 113.99927 * 179.97438 * 18 17 16
35 35 H 1.08994 * 109.54069 * 299.99579 * 19 14 13
36 36 H 1.09007 * 109.52421 * 303.05710 * 20 19 14
37 37 H 1.09001 * 109.52032 * 63.24269 * 20 19 14
38 38 H 1.08999 * 109.40477 * 297.49316 * 21 20 19
39 39 H 1.09004 * 109.49529 * 177.50903 * 21 20 19
40 40 H 1.09003 * 109.47793 * 301.17629 * 23 22 21
41 41 H 1.08998 * 109.48065 * 181.14197 * 23 22 21
42 42 H 1.09002 * 109.52038 * 182.49224 * 24 23 22
43 43 H 1.09000 * 109.57556 * 62.32890 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 3.1028 1.6966 -1.2125
5 1 1.2839 2.7465 -0.0006
6 1 3.1027 1.6966 1.2125
7 6 2.0046 -1.1939 0.0005
8 1 3.0845 -1.1939 0.0010
9 6 1.2511 -2.4991 0.0005
10 7 2.2032 -3.6126 0.0005
11 6 1.7541 -4.8833 0.0011
12 8 0.5586 -5.1055 0.0011
13 7 2.6299 -5.9076 0.0067
14 6 2.1417 -7.2889 0.0133
15 1 1.2265 -7.3479 0.6025
16 6 1.8541 -7.7350 -1.4217
17 6 0.7052 -6.9022 -1.9940
18 8 0.4361 -7.3193 -3.3341
19 6 3.2039 -8.2023 0.6281
20 6 2.6933 -9.6465 0.6399
21 6 3.7279 -10.5396 1.3297
22 8 3.9705 -10.0548 2.6518
23 6 4.4947 -8.7262 2.6991
24 6 3.4899 -7.7599 2.0665
25 1 -0.4851 0.8399 -0.0004
26 1 0.6248 -2.5571 -0.8896
27 1 0.6242 -2.5567 0.8903
28 1 3.1569 -3.4353 0.0009
29 1 3.5836 -5.7303 0.0064
30 1 2.7457 -7.5921 -2.0322
31 1 1.5760 -8.7889 -1.4256
32 1 -0.1864 -7.0452 -1.3835
33 1 0.9832 -5.8484 -1.9900
34 1 -0.2830 -6.8332 -3.7604
35 1 4.1196 -8.1442 0.0398
36 1 1.7507 -9.6951 1.1852
37 1 2.5408 -9.9872 -0.3841
38 1 4.6573 -10.5234 0.7604
39 1 3.3506 -11.5610 1.3805
40 1 5.4341 -8.6863 2.1477
41 1 4.6696 -8.4411 3.7366
42 1 3.9067 -6.7527 2.0616
43 1 2.5638 -7.7682 2.6411
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000426410914.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:36:50
Heat of formation + Delta-G solvation = -147.166044 kcal
Electronic energy + Delta-G solvation = -23561.433129 eV
Core-core repulsion = 20026.928269 eV
Total energy + Delta-G solvation = -3534.504860 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 286.173 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-40.24666 -39.06599 -36.94602 -35.88182 -34.13260 -32.93215 -32.27131 -31.54453
-30.52060 -27.34969 -26.34351 -23.89475 -23.25113 -22.45955 -20.95575 -20.44353
-20.01574 -18.10747 -17.15781 -16.62375 -16.24831 -16.12385 -15.90194 -15.19568
-14.89198 -14.71160 -14.46357 -14.15434 -14.06567 -13.71483 -13.38432 -13.10944
-12.68317 -12.56347 -12.36092 -11.97235 -11.85093 -11.53870 -11.52855 -11.07711
-11.00780 -10.88879 -10.80428 -10.69864 -10.46511 -10.30948 -9.74333 -9.64093
-9.41407 -9.39690 -8.78185 -8.70289 -7.79211 -6.17340 -4.24113 3.24275
3.25673 3.29803 3.34255 3.66179 3.88671 4.14318 4.30923 4.53018
4.58086 4.68593 4.78924 4.97623 5.05840 5.12235 5.18291 5.18785
5.21778 5.31281 5.44619 5.48024 5.56150 5.62349 5.66313 5.77706
5.82251 5.93295 6.00620 6.12932 6.25566 6.29836 6.85599 6.96541
7.09069 7.48208 7.52405 7.54130 7.82268 7.88448 8.02162 8.73846
8.91300 9.30143 9.45555 10.92813
Molecular weight = 286.17amu
Principal moments of inertia in cm(-1)
A = 0.018800 B = 0.003727 C = 0.003235
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1489.035294 B = 7511.431900 C = 8652.189193
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.886 5.886
2 C 0.064 3.936
3 Si 0.904 3.096
4 H -0.276 1.276
5 H -0.285 1.285
6 H -0.275 1.275
7 C -0.543 4.543
8 H 0.061 0.939
9 C 0.269 3.731
10 N -0.730 5.730
11 C 0.693 3.307
12 O -0.599 6.599
13 N -0.752 5.752
14 C 0.175 3.825
15 H 0.089 0.911
16 C -0.129 4.129
17 C 0.079 3.921
18 O -0.588 6.588
19 C -0.093 4.093
20 C -0.151 4.151
21 C 0.062 3.938
22 O -0.385 6.385
23 C 0.061 3.939
24 C -0.149 4.149
25 H 0.266 0.734
26 H 0.023 0.977
27 H 0.024 0.976
28 H 0.386 0.614
29 H 0.390 0.610
30 H 0.066 0.934
31 H 0.074 0.926
32 H 0.050 0.950
33 H 0.057 0.943
34 H 0.378 0.622
35 H 0.076 0.924
36 H 0.076 0.924
37 H 0.080 0.920
38 H 0.049 0.951
39 H 0.093 0.907
40 H 0.049 0.951
41 H 0.093 0.907
42 H 0.077 0.923
43 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.853 -18.492 0.660 20.512
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.523 5.523
2 C -0.140 4.140
3 Si 0.731 3.269
4 H -0.201 1.201
5 H -0.211 1.211
6 H -0.201 1.201
7 C -0.581 4.581
8 H 0.080 0.920
9 C 0.147 3.853
10 N -0.381 5.381
11 C 0.393 3.607
12 O -0.478 6.478
13 N -0.409 5.409
14 C 0.069 3.931
15 H 0.107 0.893
16 C -0.168 4.168
17 C 0.002 3.998
18 O -0.394 6.394
19 C -0.112 4.112
20 C -0.189 4.189
21 C -0.015 4.015
22 O -0.304 6.304
23 C -0.015 4.015
24 C -0.187 4.187
25 H 0.076 0.924
26 H 0.041 0.959
27 H 0.042 0.958
28 H 0.218 0.782
29 H 0.223 0.777
30 H 0.085 0.915
31 H 0.093 0.907
32 H 0.069 0.931
33 H 0.076 0.924
34 H 0.225 0.775
35 H 0.094 0.906
36 H 0.095 0.905
37 H 0.099 0.901
38 H 0.067 0.933
39 H 0.111 0.889
40 H 0.067 0.933
41 H 0.111 0.889
42 H 0.096 0.904
43 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 7.989 -19.022 0.971 20.655
hybrid contribution 0.884 1.798 -0.409 2.045
sum 8.874 -17.224 0.562 19.384
Atomic orbital electron populations
1.69961 1.06086 1.27407 1.48853 1.24935 0.94909 0.99385 0.94736
0.86478 0.79415 0.82353 0.78665 1.20098 1.21067 1.20084 1.21187
0.93218 0.90485 1.53257 0.92043 1.18954 0.87730 0.81071 0.97507
1.45746 1.10779 1.04492 1.77130 1.16126 0.85308 0.81035 0.78219
1.90868 1.14161 1.84149 1.58662 1.45251 1.08741 1.04858 1.82033
1.20634 0.97418 0.80034 0.95062 0.89274 1.22020 0.98775 1.00083
0.95949 1.22337 0.97453 0.98317 0.81704 1.86331 1.58621 1.65359
1.29058 1.21418 0.98739 0.94647 0.96425 1.22291 1.00181 0.94474
1.01998 1.22567 0.97488 0.97699 0.83729 1.87935 1.84895 1.30292
1.27244 1.22598 0.95175 0.82141 1.01632 1.22220 1.01050 0.99780
0.95671 0.92395 0.95863 0.95767 0.78224 0.77671 0.91523 0.90732
0.93147 0.92430 0.77530 0.90563 0.90530 0.90127 0.93276 0.88869
0.93277 0.88862 0.90395 0.90660
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16
2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16
3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16
4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16
6 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16
7 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16
8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16
9 C 0.27 7.04 5.43 -5.19 -0.03 7.01 16
10 N -0.73 -15.04 5.55 -66.41 -0.37 -15.40 16
11 C 0.69 13.38 7.13 -86.92 -0.62 12.76 16
12 O -0.60 -13.76 13.48 5.28 0.07 -13.69 16
13 N -0.75 -10.40 4.40 -58.68 -0.26 -10.66 16
14 C 0.17 2.15 1.84 -67.93 -0.13 2.02 16
15 H 0.09 1.31 7.58 -51.92 -0.39 0.91 16
16 C -0.13 -1.65 5.05 -26.73 -0.13 -1.78 16
17 C 0.08 1.25 5.65 37.16 0.21 1.46 16
18 O -0.59 -8.76 13.66 -35.23 -0.48 -9.24 16
19 C -0.09 -0.86 1.91 -90.44 -0.17 -1.03 16
20 C -0.15 -1.27 4.99 -26.59 -0.13 -1.40 16
21 C 0.06 0.50 6.84 37.21 0.25 0.75 16
22 O -0.38 -3.98 10.77 -35.23 -0.38 -4.36 16
23 C 0.06 0.53 6.84 37.20 0.25 0.79 16
24 C -0.15 -1.42 5.22 -26.59 -0.14 -1.56 16
25 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16
26 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16
27 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16
28 H 0.39 6.83 8.34 -40.82 -0.34 6.49 16
29 H 0.39 4.35 8.43 -40.82 -0.34 4.01 16
30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
31 H 0.07 0.84 6.26 -51.93 -0.32 0.52 16
32 H 0.05 0.85 7.84 -51.93 -0.41 0.44 16
33 H 0.06 1.08 5.64 -51.93 -0.29 0.78 16
34 H 0.38 4.30 9.12 45.56 0.42 4.71 16
35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16
37 H 0.08 0.61 6.51 -51.93 -0.34 0.27 16
38 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16
39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16
40 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16
42 H 0.08 0.73 7.58 -51.93 -0.39 0.34 16
43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
LS Contribution 342.24 15.07 5.16 5.16
Total: -1.00 -32.96 342.24 -7.77 -40.73
By element:
Atomic # 1 Polarization: 17.37 SS G_CDS: -6.18 Total: 11.19 kcal
Atomic # 6 Polarization: 6.82 SS G_CDS: -1.05 Total: 5.77 kcal
Atomic # 7 Polarization: -51.37 SS G_CDS: 0.11 Total: -51.26 kcal
Atomic # 8 Polarization: -26.50 SS G_CDS: -0.79 Total: -27.29 kcal
Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal
Total LS contribution 5.16 Total: 5.16 kcal
Total: -32.96 -7.77 -40.73 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000426410914.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -106.432 kcal
(2) G-P(sol) polarization free energy of solvation -32.960 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.393 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.734 kcal
(6) G-S(sol) free energy of system = (1) + (5) -147.166 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds