Wall clock time and date at job start Tue Mar 31 2020 03:36:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86797 * 119.99410 * 2 1
4 4 H 1.48504 * 109.47120 * 239.99972 * 3 2 1
5 5 H 1.48504 * 109.47524 * 359.97438 * 3 2 1
6 6 H 1.48501 * 109.47077 * 119.99940 * 3 2 1
7 7 C 1.37869 * 120.00263 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99828 * 180.02562 * 7 2 1
9 9 C 1.50701 * 120.00027 * 0.02562 * 7 2 1
10 10 N 1.46504 * 109.46923 * 179.97438 * 9 7 2
11 11 C 1.34777 * 119.99854 * 179.97438 * 10 9 7
12 12 O 1.21593 * 119.99953 * 0.02562 * 11 10 9
13 13 N 1.34773 * 120.00097 * 180.27545 * 11 10 9
14 14 C 1.46500 * 120.00431 * 179.72742 * 13 11 10
15 15 H 1.09008 * 109.46846 * 325.00097 * 14 13 11
16 16 C 1.52996 * 109.47098 * 85.00044 * 14 13 11
17 17 C 1.53003 * 109.47152 * 295.00415 * 16 14 13
18 18 O 1.42902 * 109.47246 * 180.02562 * 17 16 14
19 19 C 1.52998 * 109.47391 * 205.00423 * 14 13 11
20 20 C 1.53178 * 109.54476 * 179.82114 * 19 14 13
21 21 C 1.53098 * 109.15959 * 183.24066 * 20 19 14
22 22 O 1.42900 * 109.48789 * 57.47451 * 21 20 19
23 23 C 1.42909 * 114.09796 * 298.89137 * 22 21 20
24 24 C 1.53086 * 109.41376 * 61.15702 * 23 22 21
25 25 H 0.96994 * 120.00789 * 0.02562 * 1 2 3
26 26 H 1.08998 * 109.47477 * 59.99650 * 9 7 2
27 27 H 1.08997 * 109.47150 * 299.99545 * 9 7 2
28 28 H 0.97000 * 120.00410 * 0.02562 * 10 9 7
29 29 H 0.97000 * 120.00112 * 359.73180 * 13 11 10
30 30 H 1.09000 * 109.47157 * 55.00493 * 16 14 13
31 31 H 1.09004 * 109.46885 * 175.00389 * 16 14 13
32 32 H 1.09000 * 109.46777 * 299.99691 * 17 16 14
33 33 H 1.08991 * 109.47261 * 59.99576 * 17 16 14
34 34 H 0.96699 * 113.99927 * 179.97438 * 18 17 16
35 35 H 1.08994 * 109.54069 * 299.99579 * 19 14 13
36 36 H 1.09007 * 109.52421 * 303.05710 * 20 19 14
37 37 H 1.09001 * 109.52032 * 63.24269 * 20 19 14
38 38 H 1.08999 * 109.40477 * 297.49316 * 21 20 19
39 39 H 1.09004 * 109.49529 * 177.50903 * 21 20 19
40 40 H 1.09003 * 109.47793 * 301.17629 * 23 22 21
41 41 H 1.08998 * 109.48065 * 181.14197 * 23 22 21
42 42 H 1.09002 * 109.52038 * 182.49224 * 24 23 22
43 43 H 1.09000 * 109.57556 * 62.32890 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 3.1028 1.6966 -1.2125
5 1 1.2839 2.7465 -0.0006
6 1 3.1027 1.6966 1.2125
7 6 2.0046 -1.1939 0.0005
8 1 3.0845 -1.1939 0.0010
9 6 1.2511 -2.4991 0.0005
10 7 2.2032 -3.6126 0.0005
11 6 1.7541 -4.8833 0.0011
12 8 0.5586 -5.1055 0.0011
13 7 2.6299 -5.9076 0.0067
14 6 2.1417 -7.2889 0.0133
15 1 1.2265 -7.3479 0.6025
16 6 1.8541 -7.7350 -1.4217
17 6 0.7052 -6.9022 -1.9940
18 8 0.4361 -7.3193 -3.3341
19 6 3.2039 -8.2023 0.6281
20 6 2.6933 -9.6465 0.6399
21 6 3.7279 -10.5396 1.3297
22 8 3.9705 -10.0548 2.6518
23 6 4.4947 -8.7262 2.6991
24 6 3.4899 -7.7599 2.0665
25 1 -0.4851 0.8399 -0.0004
26 1 0.6248 -2.5571 -0.8896
27 1 0.6242 -2.5567 0.8903
28 1 3.1569 -3.4353 0.0009
29 1 3.5836 -5.7303 0.0064
30 1 2.7457 -7.5921 -2.0322
31 1 1.5760 -8.7889 -1.4256
32 1 -0.1864 -7.0452 -1.3835
33 1 0.9832 -5.8484 -1.9900
34 1 -0.2830 -6.8332 -3.7604
35 1 4.1196 -8.1442 0.0398
36 1 1.7507 -9.6951 1.1852
37 1 2.5408 -9.9872 -0.3841
38 1 4.6573 -10.5234 0.7604
39 1 3.3506 -11.5610 1.3805
40 1 5.4341 -8.6863 2.1477
41 1 4.6696 -8.4411 3.7366
42 1 3.9067 -6.7527 2.0616
43 1 2.5638 -7.7682 2.6411
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000426410914.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:36:48
Heat of formation + Delta-G solvation = -174.873613 kcal
Electronic energy + Delta-G solvation = -23562.634619 eV
Core-core repulsion = 20026.928269 eV
Total energy + Delta-G solvation = -3535.706350 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 286.173 amu
Computer time = 2.07 seconds
Orbital eigenvalues (eV)
-41.42494 -40.15294 -38.17717 -37.02441 -36.01399 -34.48320 -33.77207 -32.39976
-31.57566 -29.17751 -27.50834 -24.87291 -24.59056 -23.79609 -22.20948 -21.67116
-21.10037 -19.70769 -18.40810 -18.04081 -17.68927 -16.98131 -16.87373 -16.78416
-16.30623 -15.81226 -15.66826 -15.47647 -15.13111 -14.93351 -14.75380 -14.32274
-14.11225 -14.00738 -13.53070 -13.33171 -13.23141 -12.90951 -12.68418 -12.51000
-12.23550 -12.22711 -12.07504 -11.75006 -11.54771 -11.48052 -11.20085 -11.10221
-10.90974 -10.76922 -10.48297 -10.15903 -9.57221 -8.28064 -6.44310 1.43321
1.47386 1.55353 1.89713 2.29519 2.39717 3.02207 3.06991 3.13573
3.52703 3.71476 3.80965 3.89751 4.05350 4.10615 4.22113 4.34568
4.41515 4.46329 4.58160 4.65164 4.74912 4.77509 4.85004 4.85179
4.96155 5.00474 5.07158 5.15308 5.19589 5.22239 5.28940 5.39642
5.50476 5.62667 5.71109 5.86781 6.29527 6.33179 6.67702 6.72936
7.25451 7.34935 7.77403 8.83910
Molecular weight = 286.17amu
Principal moments of inertia in cm(-1)
A = 0.018800 B = 0.003727 C = 0.003235
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1489.035294 B = 7511.431900 C = 8652.189193
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.005 3.995
3 Si 0.984 3.016
4 H -0.263 1.263
5 H -0.286 1.286
6 H -0.262 1.262
7 C -0.555 4.555
8 H 0.083 0.917
9 C 0.289 3.711
10 N -0.726 5.726
11 C 0.693 3.307
12 O -0.639 6.639
13 N -0.727 5.727
14 C 0.177 3.823
15 H 0.062 0.938
16 C -0.122 4.122
17 C 0.084 3.916
18 O -0.591 6.591
19 C -0.083 4.083
20 C -0.149 4.149
21 C 0.060 3.940
22 O -0.407 6.407
23 C 0.062 3.938
24 C -0.149 4.149
25 H 0.268 0.732
26 H -0.016 1.016
27 H -0.016 1.016
28 H 0.403 0.597
29 H 0.409 0.591
30 H 0.078 0.922
31 H 0.095 0.905
32 H 0.031 0.969
33 H 0.024 0.976
34 H 0.391 0.609
35 H 0.100 0.900
36 H 0.062 0.938
37 H 0.095 0.905
38 H 0.066 0.934
39 H 0.105 0.895
40 H 0.068 0.932
41 H 0.097 0.903
42 H 0.079 0.921
43 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.931 -19.219 0.260 22.623
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.195 4.195
3 Si 0.807 3.193
4 H -0.187 1.187
5 H -0.212 1.212
6 H -0.187 1.187
7 C -0.593 4.593
8 H 0.101 0.899
9 C 0.165 3.835
10 N -0.379 5.379
11 C 0.393 3.607
12 O -0.521 6.521
13 N -0.384 5.384
14 C 0.071 3.929
15 H 0.080 0.920
16 C -0.161 4.161
17 C 0.006 3.994
18 O -0.398 6.398
19 C -0.102 4.102
20 C -0.187 4.187
21 C -0.017 4.017
22 O -0.327 6.327
23 C -0.014 4.014
24 C -0.186 4.186
25 H 0.077 0.923
26 H 0.002 0.998
27 H 0.002 0.998
28 H 0.238 0.762
29 H 0.245 0.755
30 H 0.097 0.903
31 H 0.114 0.886
32 H 0.049 0.951
33 H 0.043 0.957
34 H 0.240 0.760
35 H 0.118 0.882
36 H 0.081 0.919
37 H 0.113 0.887
38 H 0.084 0.916
39 H 0.123 0.877
40 H 0.086 0.914
41 H 0.115 0.885
42 H 0.098 0.902
43 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 11.137 -19.805 0.565 22.729
hybrid contribution -0.145 1.931 -0.307 1.961
sum 10.992 -17.874 0.257 20.985
Atomic orbital electron populations
1.70129 1.08236 1.28587 1.49981 1.26036 0.95751 1.03796 0.93913
0.85225 0.77918 0.76705 0.79463 1.18717 1.21158 1.18667 1.21580
0.94279 0.90598 1.52870 0.89934 1.18342 0.88016 0.83311 0.93788
1.45319 1.10779 1.03981 1.77838 1.16252 0.85313 0.81435 0.77734
1.90847 1.16391 1.84723 1.60152 1.45007 1.08963 1.04296 1.80156
1.20752 0.97682 0.79387 0.95030 0.92014 1.21998 0.97857 1.00601
0.95597 1.22202 0.97935 0.97134 0.82099 1.86303 1.59422 1.65590
1.28531 1.21375 0.98350 0.94264 0.96169 1.22288 0.99803 0.93845
1.02770 1.22715 0.98043 0.97975 0.82930 1.87914 1.85131 1.30883
1.28729 1.22654 0.95331 0.81253 1.02184 1.22200 1.00421 1.00369
0.95659 0.92280 0.99792 0.99782 0.76209 0.75484 0.90302 0.88638
0.95063 0.95742 0.76018 0.88157 0.91945 0.88681 0.91553 0.87723
0.91372 0.88488 0.90221 0.92977
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.04 13.29 21.44 0.28 -55.76 16
2 C 0.00 0.26 5.46 84.65 0.46 0.72 16
3 Si 0.98 42.07 29.54 68.60 2.03 44.09 16
4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16
5 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16
6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16
7 C -0.56 -30.04 9.28 25.60 0.24 -29.80 16
8 H 0.08 4.02 7.60 -2.91 -0.02 4.00 16
9 C 0.29 15.82 5.43 85.63 0.46 16.28 16
10 N -0.73 -30.42 5.55 -482.29 -2.68 -33.10 16
11 C 0.69 27.40 7.13 179.06 1.28 28.67 16
12 O -0.64 -30.96 13.48 -4.01 -0.05 -31.01 16
13 N -0.73 -19.53 4.40 -457.81 -2.01 -21.55 16
14 C 0.18 4.19 1.84 44.99 0.08 4.28 16
15 H 0.06 1.86 7.58 -2.38 -0.02 1.84 16
16 C -0.12 -2.91 5.05 30.59 0.15 -2.76 16
17 C 0.08 2.69 5.65 71.98 0.41 3.10 16
18 O -0.59 -17.29 13.66 -148.98 -2.04 -19.33 16
19 C -0.08 -1.33 1.91 -10.67 -0.02 -1.35 16
20 C -0.15 -2.15 4.99 30.69 0.15 -2.00 16
21 C 0.06 0.79 6.84 72.01 0.49 1.28 16
22 O -0.41 -7.57 10.77 -148.98 -1.60 -9.17 16
23 C 0.06 0.94 6.84 72.01 0.49 1.43 16
24 C -0.15 -2.61 5.22 30.68 0.16 -2.45 16
25 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16
26 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16
27 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16
28 H 0.40 13.91 8.34 -92.71 -0.77 13.14 16
29 H 0.41 8.18 8.43 -92.71 -0.78 7.40 16
30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16
31 H 0.10 1.92 6.26 -2.38 -0.01 1.91 16
32 H 0.03 1.10 7.84 -2.39 -0.02 1.08 16
33 H 0.02 0.94 5.64 -2.39 -0.01 0.93 16
34 H 0.39 8.89 9.12 -74.06 -0.68 8.22 16
35 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16
36 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16
37 H 0.09 1.11 6.51 -2.39 -0.02 1.10 16
38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
39 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16
40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
41 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16
42 H 0.08 1.35 7.58 -2.39 -0.02 1.33 16
43 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16
Total: -1.00 -74.47 342.24 -2.91 -77.38
By element:
Atomic # 1 Polarization: 32.23 SS G_CDS: -1.19 Total: 31.04 kcal
Atomic # 6 Polarization: 13.04 SS G_CDS: 4.36 Total: 17.41 kcal
Atomic # 7 Polarization: -105.99 SS G_CDS: -4.41 Total: -110.40 kcal
Atomic # 8 Polarization: -55.82 SS G_CDS: -3.69 Total: -59.51 kcal
Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal
Total: -74.47 -2.91 -77.38 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000426410914.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.494 kcal
(2) G-P(sol) polarization free energy of solvation -74.474 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.968 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.905 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.379 kcal
(6) G-S(sol) free energy of system = (1) + (5) -174.874 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.07 seconds