Wall clock time and date at job start Tue Mar 31 2020 03:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99736 * 2 1 4 4 H 1.48501 * 109.46996 * 270.00002 * 3 2 1 5 5 H 1.48505 * 109.47390 * 29.99894 * 3 2 1 6 6 H 1.48503 * 109.47242 * 150.00183 * 3 2 1 7 7 C 1.37870 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99983 * 173.55553 * 7 2 1 9 9 C 1.50697 * 120.00191 * 353.55966 * 7 2 1 10 10 C 1.53005 * 115.54927 * 85.40713 * 9 7 2 11 11 N 1.46500 * 109.46942 * 65.12975 * 10 9 7 12 12 C 1.34782 * 119.99942 * 178.21726 * 11 10 9 13 13 O 1.21583 * 119.99622 * 0.26827 * 12 11 10 14 14 N 1.34770 * 119.99918 * 180.27587 * 12 11 10 15 15 C 1.46505 * 119.99997 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47199 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.46718 * 179.97438 * 16 15 14 18 18 O 1.42903 * 109.46567 * 179.97438 * 17 16 15 19 19 C 1.42901 * 113.99669 * 179.97438 * 18 17 16 20 20 C 1.53003 * 109.47288 * 179.97438 * 19 18 17 21 21 O 1.42900 * 109.46963 * 64.99679 * 20 19 18 22 22 C 1.53005 * 117.50005 * 231.07837 * 9 7 2 23 23 C 1.52995 * 117.50230 * 299.73800 * 9 7 2 24 24 H 0.97003 * 120.00760 * 5.06540 * 1 2 3 25 25 H 1.08999 * 109.47098 * 305.12838 * 10 9 7 26 26 H 1.09001 * 109.47169 * 185.12356 * 10 9 7 27 27 H 0.96998 * 120.00062 * 358.49050 * 11 10 9 28 28 H 0.96999 * 120.00718 * 359.97438 * 14 12 11 29 29 H 1.09009 * 109.46638 * 299.99747 * 15 14 12 30 30 H 1.08997 * 109.47154 * 59.99301 * 15 14 12 31 31 H 1.08999 * 109.46658 * 299.99500 * 16 15 14 32 32 H 1.08994 * 109.47373 * 60.00133 * 16 15 14 33 33 H 1.08999 * 109.47215 * 299.99242 * 17 16 15 34 34 H 1.08996 * 109.47432 * 60.00344 * 17 16 15 35 35 H 1.08996 * 109.47311 * 299.99923 * 19 18 17 36 36 H 1.09004 * 109.47039 * 60.00354 * 19 18 17 37 37 H 1.08996 * 109.47309 * 185.00118 * 20 19 18 38 38 H 1.08997 * 109.47144 * 305.00558 * 20 19 18 39 39 H 0.96701 * 114.00187 * 179.97438 * 21 20 19 40 40 H 1.09006 * 117.49485 * 215.00160 * 22 9 7 41 41 H 1.08992 * 117.49885 * 0.02562 * 22 9 7 42 42 H 1.09009 * 117.49505 * 359.97438 * 23 9 7 43 43 H 1.08997 * 117.50195 * 144.96842 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0794 -1.1969 -0.1044 9 6 1.2582 -2.4949 0.1475 10 6 0.7023 -3.0869 -1.1493 11 7 1.8115 -3.4596 -2.0307 12 6 1.5606 -4.0381 -3.2219 13 8 0.4134 -4.2461 -3.5670 14 7 2.5812 -4.3860 -4.0304 15 6 2.3084 -5.0143 -5.3255 16 6 3.6298 -5.3053 -6.0396 17 6 3.3448 -5.9620 -7.3919 18 8 4.5791 -6.2333 -8.0591 19 6 4.4246 -6.8508 -9.3385 20 6 5.8026 -7.0929 -9.9577 21 8 6.5213 -8.0400 -9.1650 22 6 1.7470 -3.4728 1.2180 23 6 0.4417 -2.7006 1.4249 24 1 -0.4851 0.8367 -0.0742 25 1 0.0755 -2.3471 -1.6470 26 1 0.1080 -3.9713 -0.9195 27 1 2.7267 -3.2937 -1.7553 28 1 3.4963 -4.2199 -3.7553 29 1 1.7660 -5.9470 -5.1698 30 1 1.7063 -4.3415 -5.9361 31 1 4.1717 -4.3725 -6.1953 32 1 4.2322 -5.9780 -5.4292 33 1 2.8031 -6.8949 -7.2358 34 1 2.7423 -5.2897 -8.0025 35 1 3.9058 -7.8024 -9.2224 36 1 3.8438 -6.1974 -9.9896 37 1 5.6833 -7.4815 -10.9690 38 1 6.3555 -6.1541 -9.9921 39 1 7.4058 -8.2423 -9.4995 40 1 1.6726 -4.5379 0.9983 41 1 2.6081 -3.1750 1.8162 42 1 0.4446 -1.8950 2.1592 43 1 -0.4918 -3.2572 1.3414 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431196768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:20 Heat of formation + Delta-G solvation = -113.154641 kcal Electronic energy + Delta-G solvation = -21975.223445 eV Core-core repulsion = 18442.193430 eV Total energy + Delta-G solvation = -3533.030015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.39993 -38.60228 -36.94829 -36.70240 -35.10994 -33.22391 -31.98021 -31.76945 -29.63555 -26.52974 -25.43860 -24.34206 -22.88024 -21.69473 -21.18144 -20.20129 -19.34921 -18.07864 -17.61826 -17.16880 -16.42243 -16.17847 -15.57772 -15.28394 -14.97711 -14.68276 -14.57666 -14.07583 -13.95405 -13.75369 -13.24431 -13.13216 -12.64919 -12.53045 -11.94502 -11.78549 -11.63492 -11.53939 -11.29821 -11.15609 -10.98733 -10.90668 -10.51231 -10.47744 -10.24576 -9.89891 -9.72187 -9.49627 -8.94690 -8.81052 -8.47470 -8.23004 -7.93393 -6.05731 -4.14215 3.02650 3.26810 3.34601 3.36403 3.52871 3.82856 3.83966 4.36659 4.62351 4.73705 4.77029 4.78873 4.86179 5.01322 5.08691 5.16376 5.22486 5.30282 5.32154 5.39811 5.40910 5.61223 5.98940 6.00749 6.07035 6.37219 6.50130 6.62905 6.72249 6.77693 6.88708 6.90243 7.11456 7.22086 7.36845 7.44458 7.49985 7.63500 7.83292 8.36481 8.70040 8.86432 9.24256 9.52294 11.02119 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.022805 B = 0.002479 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.489395 B =11294.406886 C =11810.283966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.182 3.818 11 N -0.720 5.720 12 C 0.698 3.302 13 O -0.605 6.605 14 N -0.754 5.754 15 C 0.145 3.855 16 C -0.130 4.130 17 C 0.066 3.934 18 O -0.381 6.381 19 C 0.061 3.939 20 C 0.077 3.923 21 O -0.566 6.566 22 C -0.210 4.210 23 C -0.148 4.148 24 H 0.261 0.739 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.396 0.604 28 H 0.395 0.605 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.379 0.621 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.401 -12.246 -16.830 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.027 3.973 10 C 0.058 3.942 11 N -0.372 5.372 12 C 0.398 3.602 13 O -0.484 6.484 14 N -0.411 5.411 15 C 0.020 3.980 16 C -0.167 4.167 17 C -0.011 4.011 18 O -0.300 6.300 19 C -0.016 4.016 20 C 0.000 4.000 21 O -0.372 6.372 22 C -0.248 4.248 23 C -0.186 4.186 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.053 0.947 27 H 0.229 0.771 28 H 0.228 0.772 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.225 0.775 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.749 -12.221 -16.620 22.408 hybrid contribution 1.460 1.103 -0.293 1.853 sum 10.209 -11.118 -16.913 22.669 Atomic orbital electron populations 1.69975 1.05883 1.26900 1.48267 1.24988 0.94807 0.98945 0.94354 0.86630 0.79906 0.83579 0.78116 1.20698 1.21184 1.19852 1.20325 0.92786 0.88626 1.51954 0.92248 1.19048 0.98612 0.93908 0.85776 1.20852 0.86644 0.96650 0.90039 1.45138 1.11311 1.63580 1.17201 1.16022 0.84523 0.78851 0.80829 1.90866 1.19892 1.62071 1.75596 1.45027 1.08571 1.67882 1.19670 1.20880 0.95640 0.97933 0.83532 1.21667 0.97999 1.02081 0.94998 1.22355 0.86261 0.99208 0.93291 1.87926 1.29819 1.80812 1.31480 1.22531 0.96229 0.97308 0.85509 1.22200 0.92417 0.92432 0.93001 1.86575 1.32436 1.63463 1.54694 1.23019 0.98631 0.95691 1.07439 1.22491 0.92303 1.01075 1.02713 0.92861 0.91204 0.94736 0.77071 0.77192 0.91817 0.91778 0.90388 0.90361 0.92872 0.92918 0.92526 0.91818 0.92188 0.92699 0.77458 0.91635 0.90399 0.89827 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.50 12.91 55.43 0.72 -23.78 16 2 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 3 Si 0.89 20.68 29.55 -169.99 -5.02 15.66 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.50 -12.92 8.63 -34.44 -0.30 -13.22 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.03 0.65 1.38 -155.66 -0.21 0.44 16 10 C 0.18 4.24 5.50 -4.04 -0.02 4.22 16 11 N -0.72 -14.41 5.48 -65.22 -0.36 -14.76 16 12 C 0.70 13.74 8.57 -86.92 -0.74 12.99 16 13 O -0.60 -14.28 16.34 5.29 0.09 -14.19 16 14 N -0.75 -11.01 5.56 -65.22 -0.36 -11.37 16 15 C 0.15 1.81 5.67 -4.04 -0.02 1.79 16 16 C -0.13 -1.28 5.70 -26.73 -0.15 -1.43 16 17 C 0.07 0.61 5.94 37.16 0.22 0.84 16 18 O -0.38 -4.09 10.31 -40.08 -0.41 -4.51 16 19 C 0.06 0.48 6.32 37.16 0.23 0.71 16 20 C 0.08 0.50 7.43 37.16 0.28 0.78 16 21 O -0.57 -4.68 13.62 -40.08 -0.55 -5.23 16 22 C -0.21 -4.41 9.96 -26.69 -0.27 -4.68 16 23 C -0.15 -3.41 9.42 -26.70 -0.25 -3.66 16 24 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 25 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16 26 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 27 H 0.40 7.15 8.38 -40.82 -0.34 6.81 16 28 H 0.39 4.70 8.49 -40.82 -0.35 4.35 16 29 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.38 1.27 9.12 45.56 0.42 1.69 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.08 2.04 8.14 -51.92 -0.42 1.62 16 43 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -33.60 367.34 -8.28 -41.88 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -6.58 Total: 10.13 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.34 Total: 0.64 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.00 Total: -49.91 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.87 Total: -23.93 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.60 -8.28 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431196768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.280 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds