Wall clock time and date at job start Tue Mar 31 2020 03:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99736 * 2 1 4 4 H 1.48501 * 109.46996 * 270.00002 * 3 2 1 5 5 H 1.48505 * 109.47390 * 29.99894 * 3 2 1 6 6 H 1.48503 * 109.47242 * 150.00183 * 3 2 1 7 7 C 1.37870 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99983 * 173.55553 * 7 2 1 9 9 C 1.50697 * 120.00191 * 353.55966 * 7 2 1 10 10 C 1.53005 * 115.54927 * 85.40713 * 9 7 2 11 11 N 1.46500 * 109.46942 * 65.12975 * 10 9 7 12 12 C 1.34782 * 119.99942 * 178.21726 * 11 10 9 13 13 O 1.21583 * 119.99622 * 0.26827 * 12 11 10 14 14 N 1.34770 * 119.99918 * 180.27587 * 12 11 10 15 15 C 1.46505 * 119.99997 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47199 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.46718 * 179.97438 * 16 15 14 18 18 O 1.42903 * 109.46567 * 179.97438 * 17 16 15 19 19 C 1.42901 * 113.99669 * 179.97438 * 18 17 16 20 20 C 1.53003 * 109.47288 * 179.97438 * 19 18 17 21 21 O 1.42900 * 109.46963 * 64.99679 * 20 19 18 22 22 C 1.53005 * 117.50005 * 231.07837 * 9 7 2 23 23 C 1.52995 * 117.50230 * 299.73800 * 9 7 2 24 24 H 0.97003 * 120.00760 * 5.06540 * 1 2 3 25 25 H 1.08999 * 109.47098 * 305.12838 * 10 9 7 26 26 H 1.09001 * 109.47169 * 185.12356 * 10 9 7 27 27 H 0.96998 * 120.00062 * 358.49050 * 11 10 9 28 28 H 0.96999 * 120.00718 * 359.97438 * 14 12 11 29 29 H 1.09009 * 109.46638 * 299.99747 * 15 14 12 30 30 H 1.08997 * 109.47154 * 59.99301 * 15 14 12 31 31 H 1.08999 * 109.46658 * 299.99500 * 16 15 14 32 32 H 1.08994 * 109.47373 * 60.00133 * 16 15 14 33 33 H 1.08999 * 109.47215 * 299.99242 * 17 16 15 34 34 H 1.08996 * 109.47432 * 60.00344 * 17 16 15 35 35 H 1.08996 * 109.47311 * 299.99923 * 19 18 17 36 36 H 1.09004 * 109.47039 * 60.00354 * 19 18 17 37 37 H 1.08996 * 109.47309 * 185.00118 * 20 19 18 38 38 H 1.08997 * 109.47144 * 305.00558 * 20 19 18 39 39 H 0.96701 * 114.00187 * 179.97438 * 21 20 19 40 40 H 1.09006 * 117.49485 * 215.00160 * 22 9 7 41 41 H 1.08992 * 117.49885 * 0.02562 * 22 9 7 42 42 H 1.09009 * 117.49505 * 359.97438 * 23 9 7 43 43 H 1.08997 * 117.50195 * 144.96842 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0794 -1.1969 -0.1044 9 6 1.2582 -2.4949 0.1475 10 6 0.7023 -3.0869 -1.1493 11 7 1.8115 -3.4596 -2.0307 12 6 1.5606 -4.0381 -3.2219 13 8 0.4134 -4.2461 -3.5670 14 7 2.5812 -4.3860 -4.0304 15 6 2.3084 -5.0143 -5.3255 16 6 3.6298 -5.3053 -6.0396 17 6 3.3448 -5.9620 -7.3919 18 8 4.5791 -6.2333 -8.0591 19 6 4.4246 -6.8508 -9.3385 20 6 5.8026 -7.0929 -9.9577 21 8 6.5213 -8.0400 -9.1650 22 6 1.7470 -3.4728 1.2180 23 6 0.4417 -2.7006 1.4249 24 1 -0.4851 0.8367 -0.0742 25 1 0.0755 -2.3471 -1.6470 26 1 0.1080 -3.9713 -0.9195 27 1 2.7267 -3.2937 -1.7553 28 1 3.4963 -4.2199 -3.7553 29 1 1.7660 -5.9470 -5.1698 30 1 1.7063 -4.3415 -5.9361 31 1 4.1717 -4.3725 -6.1953 32 1 4.2322 -5.9780 -5.4292 33 1 2.8031 -6.8949 -7.2358 34 1 2.7423 -5.2897 -8.0025 35 1 3.9058 -7.8024 -9.2224 36 1 3.8438 -6.1974 -9.9896 37 1 5.6833 -7.4815 -10.9690 38 1 6.3555 -6.1541 -9.9921 39 1 7.4058 -8.2423 -9.4995 40 1 1.6726 -4.5379 0.9983 41 1 2.6081 -3.1750 1.8162 42 1 0.4446 -1.8950 2.1592 43 1 -0.4918 -3.2572 1.3414 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431196768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:19 Heat of formation + Delta-G solvation = -139.844297 kcal Electronic energy + Delta-G solvation = -21976.380795 eV Core-core repulsion = 18442.193430 eV Total energy + Delta-G solvation = -3534.187365 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.94009 -39.30191 -38.57063 -37.45883 -36.29761 -34.93618 -33.95739 -32.80799 -30.30964 -28.16845 -27.22190 -25.61077 -23.43464 -22.96057 -22.57282 -21.73513 -21.21432 -19.17221 -18.61089 -18.15477 -17.77574 -17.21289 -16.93930 -16.66956 -16.39064 -15.90767 -15.61421 -15.47022 -15.25593 -14.86355 -14.76877 -14.41853 -13.90361 -13.68599 -13.44602 -13.22198 -12.90165 -12.86638 -12.82811 -12.33597 -12.31366 -12.05096 -12.02362 -11.90592 -11.51240 -11.28157 -10.96165 -10.83562 -10.57514 -10.44871 -10.28233 -10.02875 -9.57056 -8.08096 -6.21130 1.42990 1.45591 1.54013 1.78890 2.25476 2.43674 2.69546 3.19991 3.37549 3.42611 3.65024 3.97280 4.04811 4.08363 4.24458 4.27223 4.29931 4.50133 4.51401 4.57514 4.58448 4.67464 4.68674 4.70956 4.76259 4.84265 5.00576 5.03207 5.12218 5.14730 5.29249 5.53849 5.60810 5.63629 5.73336 5.80484 6.17025 6.23555 6.38718 6.85817 6.92363 7.25240 7.48065 7.69511 8.99519 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.022805 B = 0.002479 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.489395 B =11294.406886 C =11810.283966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.951 3.049 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.004 3.996 10 C 0.199 3.801 11 N -0.715 5.715 12 C 0.695 3.305 13 O -0.647 6.647 14 N -0.735 5.735 15 C 0.145 3.855 16 C -0.116 4.116 17 C 0.065 3.935 18 O -0.404 6.404 19 C 0.050 3.950 20 C 0.074 3.926 21 O -0.595 6.595 22 C -0.175 4.175 23 C -0.159 4.159 24 H 0.258 0.742 25 H 0.026 0.974 26 H 0.033 0.967 27 H 0.407 0.593 28 H 0.411 0.589 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.396 0.604 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.454 -12.889 -17.649 25.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.178 4.178 3 Si 0.777 3.223 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.188 1.188 7 C -0.540 4.540 8 H 0.082 0.918 9 C 0.004 3.996 10 C 0.074 3.926 11 N -0.368 5.368 12 C 0.395 3.605 13 O -0.530 6.530 14 N -0.392 5.392 15 C 0.021 3.979 16 C -0.153 4.153 17 C -0.012 4.012 18 O -0.324 6.324 19 C -0.026 4.026 20 C -0.003 4.003 21 O -0.404 6.404 22 C -0.212 4.212 23 C -0.197 4.197 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.242 0.758 28 H 0.247 0.753 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.246 0.754 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.893 -12.883 -17.460 24.279 hybrid contribution 0.847 1.238 -0.095 1.503 sum 11.739 -11.645 -17.555 24.116 Atomic orbital electron populations 1.70106 1.07302 1.27309 1.49896 1.25724 0.95470 1.02146 0.94456 0.85668 0.78930 0.79762 0.77931 1.20628 1.21617 1.18754 1.20650 0.93126 0.89528 1.50733 0.91758 1.19069 0.99772 0.94524 0.86272 1.20407 0.87049 0.95195 0.89990 1.44909 1.11023 1.63691 1.17208 1.16192 0.84788 0.78615 0.80940 1.90837 1.22011 1.63708 1.76425 1.44887 1.08295 1.66507 1.19501 1.20989 0.97166 0.97325 0.82428 1.21509 0.96240 1.02410 0.95185 1.22359 0.86205 0.99617 0.93026 1.87883 1.30455 1.81207 1.32869 1.22811 0.97532 0.97469 0.84814 1.22339 0.91599 0.92459 0.93904 1.86515 1.34011 1.63925 1.55930 1.23002 0.97349 0.96249 1.04634 1.22439 0.93807 1.01419 1.02084 0.93254 0.95581 0.94922 0.75761 0.75288 0.92142 0.92472 0.89988 0.90064 0.92478 0.91904 0.92801 0.89858 0.89427 0.92528 0.75376 0.89346 0.89491 0.91734 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.87 12.91 21.44 0.28 -51.59 16 2 C 0.02 1.20 5.39 84.65 0.46 1.66 16 3 Si 0.95 42.37 29.55 68.60 2.03 44.40 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.50 -25.69 8.63 25.60 0.22 -25.47 16 8 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 9 C 0.00 0.21 1.38 -52.93 -0.07 0.14 16 10 C 0.20 9.34 5.50 86.38 0.48 9.81 16 11 N -0.72 -28.13 5.48 -478.53 -2.62 -30.75 16 12 C 0.70 26.98 8.57 179.05 1.53 28.51 16 13 O -0.65 -30.82 16.34 -3.98 -0.06 -30.88 16 14 N -0.73 -20.37 5.56 -478.53 -2.66 -23.04 16 15 C 0.15 3.44 5.67 86.38 0.49 3.93 16 16 C -0.12 -2.07 5.70 30.60 0.17 -1.90 16 17 C 0.06 1.11 5.94 71.98 0.43 1.53 16 18 O -0.40 -8.08 10.31 -144.34 -1.49 -9.56 16 19 C 0.05 0.70 6.32 71.98 0.45 1.16 16 20 C 0.07 0.84 7.43 71.98 0.53 1.37 16 21 O -0.60 -9.05 13.62 -144.34 -1.97 -11.01 16 22 C -0.18 -6.97 9.96 30.62 0.30 -6.67 16 23 C -0.16 -7.30 9.42 30.62 0.29 -7.01 16 24 H 0.26 14.25 8.32 -92.71 -0.77 13.48 16 25 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.03 1.52 8.09 -2.39 -0.02 1.50 16 27 H 0.41 14.05 8.38 -92.71 -0.78 13.27 16 28 H 0.41 8.85 8.49 -92.71 -0.79 8.07 16 29 H 0.06 1.50 8.14 -2.38 -0.02 1.49 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.40 2.15 9.12 -74.06 -0.68 1.47 16 40 H 0.09 3.13 8.14 -2.38 -0.02 3.12 16 41 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.06 3.18 8.14 -2.38 -0.02 3.16 16 43 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -72.25 367.34 -2.43 -74.68 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: -1.22 Total: 30.70 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 5.29 Total: 7.06 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -5.01 Total: -105.38 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -3.52 Total: -51.46 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -72.25 -2.43 -74.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431196768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.164 kcal (2) G-P(sol) polarization free energy of solvation -72.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds