Wall clock time and date at job start Tue Mar 31 2020 04:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.89381 * 2 1 4 4 O 1.43245 * 109.83029 * 239.07267 * 2 1 3 5 5 C 1.43641 * 109.97171 * 238.77158 * 4 2 1 6 6 C 1.54951 * 105.13632 * 24.42677 * 5 4 2 7 7 C 1.54380 * 109.83416 * 120.93535 * 2 1 3 8 8 O 1.42894 * 110.84790 * 216.34537 * 7 2 1 9 9 C 1.52997 * 110.84666 * 339.97101 * 7 2 1 10 10 N 1.46499 * 109.47117 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00011 * 180.02562 * 10 9 7 12 12 O 1.21586 * 120.00251 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00226 * 179.97438 * 11 10 9 14 14 C 1.46490 * 120.00173 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47326 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47457 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47174 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00128 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99882 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00220 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99856 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46688 * 60.01112 * 21 19 17 23 23 H 1.48499 * 109.46894 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47310 * 300.00710 * 21 19 17 25 25 H 1.09004 * 109.46749 * 179.47461 * 1 2 3 26 26 H 1.08993 * 109.46853 * 299.47539 * 1 2 3 27 27 H 1.08999 * 109.47510 * 59.47970 * 1 2 3 28 28 H 1.08996 * 110.31178 * 143.33952 * 5 4 2 29 29 H 1.09000 * 110.30769 * 265.41581 * 5 4 2 30 30 H 1.09000 * 111.12523 * 81.47567 * 6 5 4 31 31 H 1.08998 * 111.12948 * 205.63795 * 6 5 4 32 32 H 0.96700 * 114.00211 * 179.97438 * 8 7 2 33 33 H 1.09000 * 109.46725 * 299.99615 * 9 7 2 34 34 H 1.08997 * 109.47233 * 59.99821 * 9 7 2 35 35 H 0.97005 * 120.00058 * 359.97438 * 10 9 7 36 36 H 0.96998 * 119.99418 * 359.97438 * 13 11 10 37 37 H 1.08995 * 109.47563 * 300.00207 * 14 13 11 38 38 H 1.09005 * 109.47591 * 60.00081 * 14 13 11 39 39 H 1.09003 * 109.46765 * 300.00791 * 15 14 13 40 40 H 1.09005 * 109.46683 * 59.99569 * 15 14 13 41 41 H 1.08995 * 109.47562 * 300.00332 * 16 15 14 42 42 H 1.09007 * 109.46991 * 60.00348 * 16 15 14 43 43 H 0.97007 * 119.99869 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 8 2.0160 -0.6926 -1.1559 5 6 2.8408 -1.7980 -0.7548 6 6 2.3683 -2.1570 0.6765 7 6 2.0538 -0.7465 1.2456 8 8 3.2382 -0.1260 1.7498 9 6 0.9749 -0.8241 2.3277 10 7 1.5031 -1.5364 3.4938 11 6 0.7242 -1.7266 4.5770 12 8 -0.4168 -1.3066 4.5866 13 7 1.2099 -2.3823 5.6497 14 6 0.3634 -2.5886 6.8273 15 6 1.1500 -3.3541 7.8932 16 6 0.2661 -3.5689 9.1234 17 6 1.0408 -4.3235 10.1730 18 1 2.0617 -4.6197 9.9820 19 6 0.4467 -4.6346 11.3776 20 7 -0.7963 -4.2734 11.6105 21 14 1.4072 -5.5693 12.6789 22 1 2.6096 -4.7873 13.0635 23 1 0.5492 -5.7779 13.8729 24 1 1.8261 -6.8860 12.1347 25 1 -0.3633 -1.0277 -0.0094 26 1 -0.3633 0.5056 0.8946 27 1 -0.3634 0.5219 -0.8853 28 1 2.6920 -2.6441 -1.4257 29 1 3.8902 -1.5032 -0.7456 30 1 1.4732 -2.7786 0.6504 31 1 3.1638 -2.6408 1.2432 32 1 3.6059 -0.5582 2.5328 33 1 0.6810 0.1838 2.6205 34 1 0.1075 -1.3569 1.9382 35 1 2.4133 -1.8717 3.4860 36 1 2.1201 -2.7176 5.6419 37 1 0.0549 -1.6225 7.2268 38 1 -0.5187 -3.1632 6.5447 39 1 1.4582 -4.3202 7.4934 40 1 2.0323 -2.7798 8.1760 41 1 -0.0416 -2.6027 9.5230 42 1 -0.6164 -4.1431 8.8409 43 1 -1.2144 -4.4927 12.4579 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434178657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:15 Heat of formation + Delta-G solvation = -138.880153 kcal Electronic energy + Delta-G solvation = -22648.354888 eV Core-core repulsion = 19114.209331 eV Total energy + Delta-G solvation = -3534.145557 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.95598 -39.66493 -36.99752 -35.54583 -34.45026 -33.36805 -32.53248 -31.52651 -31.02063 -27.57082 -26.33457 -25.12159 -23.10324 -22.74969 -20.96442 -20.47288 -20.39804 -18.49310 -17.83692 -16.75862 -16.37830 -16.22173 -15.85076 -15.77930 -15.61312 -14.64191 -14.62095 -14.37405 -14.01639 -13.82218 -13.67766 -13.29983 -12.84872 -12.77832 -12.44421 -12.29956 -11.99147 -11.84733 -11.74506 -11.72543 -11.00680 -10.90511 -10.75954 -10.64715 -10.55485 -10.22554 -10.00078 -9.89211 -9.47687 -9.37613 -9.16348 -8.70735 -8.39050 -6.03718 -4.07130 2.59759 3.22520 3.28403 3.30242 3.35275 3.36890 3.43653 3.85699 4.03618 4.19804 4.41803 4.44673 4.58920 4.72356 4.89467 5.01069 5.10926 5.21001 5.27816 5.31936 5.33209 5.42261 5.49326 5.62062 5.65296 5.76699 5.80172 6.12799 6.20525 6.45245 6.53294 6.57862 6.69174 6.93040 6.98069 7.01156 7.60979 7.73757 7.94739 8.00870 8.35368 8.62790 8.99303 9.57092 11.07497 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.042090 B = 0.002335 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.083959 B =11988.578781 C =12352.357656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.097 3.903 3 H 0.093 0.907 4 O -0.374 6.374 5 C 0.056 3.944 6 C -0.182 4.182 7 C 0.091 3.909 8 O -0.543 6.543 9 C 0.122 3.878 10 N -0.753 5.753 11 C 0.702 3.298 12 O -0.589 6.589 13 N -0.740 5.740 14 C 0.134 3.866 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.378 0.622 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.389 0.611 36 H 0.394 0.606 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.161 5.842 -24.371 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.039 3.961 3 H 0.111 0.889 4 O -0.294 6.294 5 C -0.021 4.021 6 C -0.220 4.220 7 C 0.049 3.951 8 O -0.349 6.349 9 C -0.003 4.003 10 N -0.411 5.411 11 C 0.401 3.599 12 O -0.466 6.466 13 N -0.394 5.394 14 C 0.011 3.989 15 C -0.158 4.158 16 C -0.014 4.014 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.227 0.773 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.223 0.777 36 H 0.227 0.773 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.763 6.690 -24.911 26.666 hybrid contribution 1.554 -1.364 1.529 2.572 sum 8.317 5.325 -23.382 25.382 Atomic orbital electron populations 1.22253 0.93385 1.03358 1.03456 1.22545 0.94559 0.96731 0.82278 0.88933 1.88460 1.67492 1.44028 1.29402 1.23322 0.94977 0.89279 0.94486 1.23950 1.03401 0.97097 0.97562 1.22989 0.85739 0.92421 0.93918 1.86596 1.41644 1.57489 1.49157 1.21874 0.95998 0.98236 0.84214 1.45039 1.16487 1.63412 1.16201 1.15954 0.84602 0.79362 0.79944 1.90937 1.17503 1.55963 1.82211 1.45388 1.17460 1.60501 1.16060 1.21538 0.93407 1.00667 0.83271 1.21892 0.99460 0.98294 0.96159 1.19023 0.94677 0.97310 0.90342 1.21158 0.99024 1.36217 0.99795 0.92720 1.25030 0.94950 0.96021 0.98450 1.69957 1.12199 1.46606 1.24476 0.86639 0.79831 0.80353 0.81043 1.20244 1.21257 1.20256 0.91572 0.90388 0.91021 0.89511 0.91663 0.88959 0.89278 0.77294 0.90297 0.89831 0.77730 0.77338 0.91862 0.91889 0.92775 0.92758 0.96228 0.96245 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 8.31 37.16 0.31 -0.91 16 2 C 0.10 0.81 3.88 -26.01 -0.10 0.71 16 3 H 0.09 0.81 8.07 -51.93 -0.42 0.39 16 4 O -0.37 -3.55 11.02 -35.23 -0.39 -3.94 16 5 C 0.06 0.39 7.78 38.19 0.30 0.69 16 6 C -0.18 -1.11 6.08 -24.48 -0.15 -1.26 16 7 C 0.09 0.67 0.88 -88.67 -0.08 0.59 16 8 O -0.54 -4.14 13.13 -35.23 -0.46 -4.60 16 9 C 0.12 1.08 3.58 -4.04 -0.01 1.07 16 10 N -0.75 -6.99 5.20 -65.23 -0.34 -7.33 16 11 C 0.70 9.96 8.57 -86.92 -0.74 9.21 16 12 O -0.59 -11.06 16.34 5.29 0.09 -10.98 16 13 N -0.74 -9.98 5.56 -65.23 -0.36 -10.34 16 14 C 0.13 2.31 5.67 -4.05 -0.02 2.29 16 15 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 21 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.07 0.48 7.50 -51.93 -0.39 0.09 16 26 H 0.08 0.55 6.69 -51.93 -0.35 0.20 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.58 8.01 -51.93 -0.42 0.16 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.38 1.73 7.71 45.56 0.35 2.08 16 33 H 0.08 0.81 7.54 -51.93 -0.39 0.41 16 34 H 0.08 0.79 6.62 -51.93 -0.34 0.45 16 35 H 0.39 2.32 7.29 -40.82 -0.30 2.02 16 36 H 0.39 4.05 8.49 -40.82 -0.35 3.71 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 350.33 15.07 5.28 5.28 Total: -1.00 -34.33 350.33 -8.03 -42.36 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.37 Total: 2.01 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -1.19 Total: -2.81 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.03 Total: -43.58 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.76 Total: -19.52 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.33 -8.03 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434178657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.519 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds