Wall clock time and date at job start Tue Mar 31 2020 04:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.89381 * 2 1 4 4 O 1.43245 * 109.83029 * 239.07267 * 2 1 3 5 5 C 1.43641 * 109.97171 * 238.77158 * 4 2 1 6 6 C 1.54951 * 105.13632 * 24.42677 * 5 4 2 7 7 C 1.54380 * 109.83416 * 120.93535 * 2 1 3 8 8 O 1.42894 * 110.84790 * 216.34537 * 7 2 1 9 9 C 1.52997 * 110.84666 * 339.97101 * 7 2 1 10 10 N 1.46499 * 109.47117 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00011 * 180.02562 * 10 9 7 12 12 O 1.21586 * 120.00251 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00226 * 179.97438 * 11 10 9 14 14 C 1.46490 * 120.00173 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47326 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47457 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47174 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00128 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99882 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00220 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99856 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46688 * 60.01112 * 21 19 17 23 23 H 1.48499 * 109.46894 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47310 * 300.00710 * 21 19 17 25 25 H 1.09004 * 109.46749 * 179.47461 * 1 2 3 26 26 H 1.08993 * 109.46853 * 299.47539 * 1 2 3 27 27 H 1.08999 * 109.47510 * 59.47970 * 1 2 3 28 28 H 1.08996 * 110.31178 * 143.33952 * 5 4 2 29 29 H 1.09000 * 110.30769 * 265.41581 * 5 4 2 30 30 H 1.09000 * 111.12523 * 81.47567 * 6 5 4 31 31 H 1.08998 * 111.12948 * 205.63795 * 6 5 4 32 32 H 0.96700 * 114.00211 * 179.97438 * 8 7 2 33 33 H 1.09000 * 109.46725 * 299.99615 * 9 7 2 34 34 H 1.08997 * 109.47233 * 59.99821 * 9 7 2 35 35 H 0.97005 * 120.00058 * 359.97438 * 10 9 7 36 36 H 0.96998 * 119.99418 * 359.97438 * 13 11 10 37 37 H 1.08995 * 109.47563 * 300.00207 * 14 13 11 38 38 H 1.09005 * 109.47591 * 60.00081 * 14 13 11 39 39 H 1.09003 * 109.46765 * 300.00791 * 15 14 13 40 40 H 1.09005 * 109.46683 * 59.99569 * 15 14 13 41 41 H 1.08995 * 109.47562 * 300.00332 * 16 15 14 42 42 H 1.09007 * 109.46991 * 60.00348 * 16 15 14 43 43 H 0.97007 * 119.99869 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 8 2.0160 -0.6926 -1.1559 5 6 2.8408 -1.7980 -0.7548 6 6 2.3683 -2.1570 0.6765 7 6 2.0538 -0.7465 1.2456 8 8 3.2382 -0.1260 1.7498 9 6 0.9749 -0.8241 2.3277 10 7 1.5031 -1.5364 3.4938 11 6 0.7242 -1.7266 4.5770 12 8 -0.4168 -1.3066 4.5866 13 7 1.2099 -2.3823 5.6497 14 6 0.3634 -2.5886 6.8273 15 6 1.1500 -3.3541 7.8932 16 6 0.2661 -3.5689 9.1234 17 6 1.0408 -4.3235 10.1730 18 1 2.0617 -4.6197 9.9820 19 6 0.4467 -4.6346 11.3776 20 7 -0.7963 -4.2734 11.6105 21 14 1.4072 -5.5693 12.6789 22 1 2.6096 -4.7873 13.0635 23 1 0.5492 -5.7779 13.8729 24 1 1.8261 -6.8860 12.1347 25 1 -0.3633 -1.0277 -0.0094 26 1 -0.3633 0.5056 0.8946 27 1 -0.3634 0.5219 -0.8853 28 1 2.6920 -2.6441 -1.4257 29 1 3.8902 -1.5032 -0.7456 30 1 1.4732 -2.7786 0.6504 31 1 3.1638 -2.6408 1.2432 32 1 3.6059 -0.5582 2.5328 33 1 0.6810 0.1838 2.6205 34 1 0.1075 -1.3569 1.9382 35 1 2.4133 -1.8717 3.4860 36 1 2.1201 -2.7176 5.6419 37 1 0.0549 -1.6225 7.2268 38 1 -0.5187 -3.1632 6.5447 39 1 1.4582 -4.3202 7.4934 40 1 2.0323 -2.7798 8.1760 41 1 -0.0416 -2.6027 9.5230 42 1 -0.6164 -4.1431 8.8409 43 1 -1.2144 -4.4927 12.4579 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434178657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:13 Heat of formation + Delta-G solvation = -167.052104 kcal Electronic energy + Delta-G solvation = -22649.576515 eV Core-core repulsion = 19114.209331 eV Total energy + Delta-G solvation = -3535.367184 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.68016 -40.69537 -37.72139 -36.95290 -35.38848 -35.17672 -33.43088 -32.70475 -31.98507 -28.89900 -27.52134 -25.92649 -24.71754 -23.39595 -22.30255 -21.89701 -21.07894 -19.50805 -18.64534 -18.39589 -17.40977 -16.96269 -16.88098 -16.77471 -16.45813 -16.31004 -15.84695 -15.46330 -15.19539 -14.85696 -14.33020 -14.23322 -13.95600 -13.73335 -13.59831 -13.41179 -13.35680 -13.03958 -12.70217 -12.53935 -12.51814 -12.39068 -12.27780 -11.71634 -11.64925 -11.60520 -11.31521 -11.15772 -11.12784 -10.61412 -10.53591 -10.45069 -9.82509 -8.18278 -6.29799 1.42570 1.45533 1.53161 1.59023 2.10638 2.42848 2.69871 2.88108 3.15532 3.17141 3.37267 3.42207 3.81752 4.04011 4.17346 4.18923 4.25299 4.27945 4.42549 4.52951 4.57929 4.62204 4.65480 4.79839 4.84747 4.97633 4.97798 5.00974 5.02817 5.18698 5.20175 5.34708 5.46875 5.55022 5.72978 5.85770 5.90436 5.96858 6.23678 6.57717 6.87683 7.05804 7.39834 7.53758 8.93614 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.042090 B = 0.002335 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.083959 B =11988.578781 C =12352.357656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.092 3.908 3 H 0.084 0.916 4 O -0.395 6.395 5 C 0.049 3.951 6 C -0.176 4.176 7 C 0.102 3.898 8 O -0.553 6.553 9 C 0.124 3.876 10 N -0.729 5.729 11 C 0.700 3.300 12 O -0.637 6.637 13 N -0.727 5.727 14 C 0.149 3.851 15 C -0.100 4.100 16 C 0.023 3.977 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.004 4.004 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.265 1.265 23 H -0.287 1.287 24 H -0.265 1.265 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.392 0.608 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.410 0.590 36 H 0.413 0.587 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.068 0.932 41 H -0.009 1.009 42 H -0.008 1.008 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.622 4.810 -24.910 27.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.034 3.966 3 H 0.102 0.898 4 O -0.315 6.315 5 C -0.027 4.027 6 C -0.214 4.214 7 C 0.060 3.940 8 O -0.362 6.362 9 C 0.000 4.000 10 N -0.387 5.387 11 C 0.399 3.601 12 O -0.519 6.519 13 N -0.383 5.383 14 C 0.024 3.976 15 C -0.138 4.138 16 C -0.015 4.015 17 C -0.579 4.579 18 H 0.086 0.914 19 C -0.202 4.202 20 N -0.576 5.576 21 Si 0.791 3.209 22 H -0.190 1.190 23 H -0.213 1.213 24 H -0.190 1.190 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.118 0.882 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.243 0.757 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.247 0.753 36 H 0.250 0.750 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.313 5.640 -25.486 27.715 hybrid contribution 0.790 -1.001 1.634 2.073 sum 10.103 4.640 -23.852 26.316 Atomic orbital electron populations 1.22225 0.92956 1.03434 1.03579 1.22584 0.94995 0.96452 0.82618 0.89773 1.88439 1.67987 1.44915 1.30169 1.23496 0.94802 0.89055 0.95345 1.23954 1.04181 0.96123 0.97121 1.22798 0.85142 0.93226 0.92813 1.86587 1.41467 1.58090 1.50027 1.21876 0.96634 0.97315 0.84197 1.44739 1.16899 1.62315 1.14768 1.16092 0.84269 0.78984 0.80718 1.90913 1.19923 1.57863 1.83182 1.44985 1.17922 1.60511 1.14863 1.21077 0.93181 0.99196 0.84118 1.21581 0.98593 0.99599 0.93992 1.18945 0.94742 0.95112 0.92695 1.21661 0.99739 1.36019 1.00454 0.91435 1.26028 0.95913 0.97081 1.01148 1.70110 1.14136 1.48144 1.25201 0.85476 0.78405 0.79251 0.77756 1.19008 1.21314 1.18981 0.91480 0.90405 0.90800 0.88230 0.91442 0.88893 0.87018 0.75713 0.91646 0.90228 0.75300 0.75019 0.93573 0.93491 0.91229 0.91286 0.99015 0.98978 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 8.31 71.98 0.60 -1.74 16 2 C 0.09 1.45 3.88 31.06 0.12 1.57 16 3 H 0.08 1.45 8.07 -2.39 -0.02 1.43 16 4 O -0.40 -7.10 11.02 -148.98 -1.64 -8.74 16 5 C 0.05 0.59 7.78 72.65 0.56 1.15 16 6 C -0.18 -1.69 6.08 32.06 0.20 -1.49 16 7 C 0.10 1.32 0.88 -9.53 -0.01 1.31 16 8 O -0.55 -7.21 13.13 -148.98 -1.96 -9.17 16 9 C 0.12 2.06 3.58 86.38 0.31 2.37 16 10 N -0.73 -11.94 5.20 -478.55 -2.49 -14.43 16 11 C 0.70 18.93 8.57 179.05 1.53 20.46 16 12 O -0.64 -23.99 16.34 -3.99 -0.07 -24.05 16 13 N -0.73 -18.27 5.56 -478.55 -2.66 -20.93 16 14 C 0.15 5.07 5.67 86.38 0.49 5.56 16 15 C -0.10 -3.67 5.27 30.59 0.16 -3.51 16 16 C 0.02 1.16 4.97 29.85 0.15 1.31 16 17 C -0.54 -29.65 9.11 25.60 0.23 -29.42 16 18 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 19 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 20 N -0.94 -56.82 13.29 21.45 0.28 -56.53 16 21 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 23 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H 0.07 0.93 7.50 -2.38 -0.02 0.91 16 26 H 0.08 1.09 6.69 -2.39 -0.02 1.07 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.93 8.01 -2.39 -0.02 0.91 16 31 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.39 2.38 7.71 -74.06 -0.57 1.81 16 33 H 0.07 1.30 7.54 -2.39 -0.02 1.29 16 34 H 0.08 1.44 6.62 -2.39 -0.02 1.42 16 35 H 0.41 3.47 7.29 -92.70 -0.68 2.79 16 36 H 0.41 7.16 8.49 -92.71 -0.79 6.37 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.05 1.75 8.14 -2.38 -0.02 1.74 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 41 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 43 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -75.24 350.33 -2.70 -77.94 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -1.01 Total: 12.88 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 4.81 Total: -2.18 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -4.86 Total: -91.89 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -3.66 Total: -41.97 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -75.24 -2.70 -77.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434178657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.116 kcal (2) G-P(sol) polarization free energy of solvation -75.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds