Wall clock time and date at job start Tue Mar 31 2020 03:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99692 * 2 1 4 4 H 1.48507 * 109.47090 * 269.99879 * 3 2 1 5 5 H 1.48499 * 109.47476 * 29.99593 * 3 2 1 6 6 H 1.48500 * 109.47255 * 150.00259 * 3 2 1 7 7 C 1.37881 * 120.00493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99449 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99892 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46609 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.46960 * 179.97438 * 10 9 7 12 12 C 1.34781 * 120.00112 * 180.02562 * 11 10 9 13 13 O 1.21583 * 119.99782 * 4.97935 * 12 11 10 14 14 N 1.34777 * 120.00020 * 184.98394 * 12 11 10 15 15 C 1.46920 * 120.62966 * 354.77097 * 14 12 11 16 16 C 1.53195 * 108.89195 * 233.67449 * 15 14 12 17 17 C 1.53034 * 109.30987 * 305.29089 * 16 15 14 18 18 C 1.53041 * 109.53698 * 61.37073 * 17 16 15 19 19 H 1.08995 * 109.49951 * 58.61570 * 18 17 16 20 20 O 1.42903 * 109.49835 * 178.68020 * 18 17 16 21 21 C 1.42901 * 113.99967 * 209.99825 * 20 18 17 22 22 C 1.52996 * 109.47087 * 180.02562 * 21 20 18 23 23 O 1.42901 * 109.47562 * 64.99451 * 22 21 20 24 24 C 1.47201 * 120.81180 * 174.90792 * 14 12 11 25 25 H 0.97001 * 120.00049 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47277 * 60.00622 * 9 7 2 27 27 H 1.08997 * 109.47003 * 299.99556 * 9 7 2 28 28 H 1.09007 * 109.47220 * 60.00403 * 10 9 7 29 29 H 1.09002 * 109.47507 * 300.00137 * 10 9 7 30 30 H 0.96996 * 119.99935 * 0.02562 * 11 10 9 31 31 H 1.09008 * 109.58722 * 113.81679 * 15 14 12 32 32 H 1.09004 * 109.59155 * 353.53081 * 15 14 12 33 33 H 1.08998 * 109.49738 * 65.25124 * 16 15 14 34 34 H 1.08999 * 109.49589 * 185.34219 * 16 15 14 35 35 H 1.09001 * 109.45683 * 181.38095 * 17 16 15 36 36 H 1.08995 * 109.46804 * 301.35920 * 17 16 15 37 37 H 1.09003 * 109.47006 * 299.99869 * 21 20 18 38 38 H 1.08996 * 109.47043 * 59.99488 * 21 20 18 39 39 H 1.08994 * 109.47212 * 185.00117 * 22 21 20 40 40 H 1.09001 * 109.47165 * 304.99667 * 22 21 20 41 41 H 0.96698 * 114.00001 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.53945 * 6.53553 * 24 14 12 43 43 H 1.09004 * 109.67937 * 246.23280 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 0.0001 11 7 5.4867 -2.6363 -0.0011 12 6 6.1607 -3.8035 -0.0017 13 8 5.5561 -4.8544 -0.0927 14 7 7.5047 -3.8056 0.0986 15 6 8.2576 -2.5440 0.0943 16 6 9.3331 -2.6119 -0.9946 17 6 10.1975 -3.8556 -0.7753 18 6 9.3259 -5.1093 -0.8785 19 1 8.8501 -5.1420 -1.8586 20 8 10.1392 -6.2713 -0.7041 21 6 9.6662 -7.4225 -1.4064 22 6 10.6083 -8.6001 -1.1482 23 8 10.5597 -8.9547 0.2352 24 6 8.2503 -5.0698 0.2117 25 1 -0.4850 0.8400 0.0004 26 1 3.8753 -0.6795 0.8894 27 1 3.8745 -0.6807 -0.8905 28 1 3.6580 -3.1504 -0.8897 29 1 3.6587 -3.1501 0.8903 30 1 5.9716 -1.7963 -0.0014 31 1 8.7299 -2.3970 1.0657 32 1 7.5806 -1.7150 -0.1121 33 1 8.8567 -2.6678 -1.9734 34 1 9.9585 -1.7207 -0.9442 35 1 10.9788 -3.8932 -1.5344 36 1 10.6537 -3.8111 0.2136 37 1 8.6651 -7.6753 -1.0571 38 1 9.6352 -7.2090 -2.4748 39 1 10.2987 -9.4524 -1.7529 40 1 11.6263 -8.3162 -1.4149 41 1 11.1336 -9.6962 0.4716 42 1 7.5670 -5.9090 0.0816 43 1 8.7218 -5.1313 1.1925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436319799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:21 Heat of formation + Delta-G solvation = -127.746212 kcal Electronic energy + Delta-G solvation = -22956.681796 eV Core-core repulsion = 19423.019044 eV Total energy + Delta-G solvation = -3533.662753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.35506 -38.76556 -37.27368 -36.17940 -35.00901 -32.96805 -32.48290 -30.99510 -30.01257 -28.96473 -25.84658 -24.32593 -23.38958 -22.54753 -21.22508 -20.76685 -19.45809 -18.09282 -17.94304 -16.96300 -16.90595 -16.04934 -15.75838 -15.38051 -15.00670 -14.77122 -14.40239 -14.15815 -13.95994 -13.80708 -13.60747 -13.45443 -13.07665 -12.85350 -12.59802 -12.49388 -11.99039 -11.53080 -11.36350 -11.30101 -11.18234 -11.12826 -10.78502 -10.42071 -10.38070 -10.23462 -9.97338 -9.91873 -9.70832 -9.31432 -8.77477 -8.60929 -8.28456 -6.09919 -4.09839 2.71757 3.25512 3.33047 3.34429 3.35944 3.48497 3.89522 4.16687 4.38440 4.53479 4.58142 4.66638 4.73471 4.80713 4.85888 4.97092 5.07056 5.17913 5.22905 5.26681 5.38520 5.41991 5.54511 5.58864 5.63324 5.70938 5.89563 5.96585 6.08722 6.26311 6.42550 6.59664 6.82644 6.96496 7.02850 7.24965 7.27319 7.29409 7.68525 8.22889 8.46469 8.88240 8.95164 9.50141 11.03153 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.031395 B = 0.002945 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.634926 B = 9505.986440 C =10175.069324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.147 3.853 11 N -0.742 5.742 12 C 0.704 3.296 13 O -0.592 6.592 14 N -0.633 5.633 15 C 0.108 3.892 16 C -0.132 4.132 17 C -0.114 4.114 18 C 0.077 3.923 19 H 0.064 0.936 20 O -0.371 6.371 21 C 0.058 3.942 22 C 0.079 3.921 23 O -0.565 6.565 24 C 0.113 3.887 25 H 0.264 0.736 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.391 0.609 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.378 0.622 42 H 0.093 0.907 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.518 -10.257 -2.989 28.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.024 3.976 11 N -0.398 5.398 12 C 0.406 3.594 13 O -0.470 6.470 14 N -0.373 5.373 15 C -0.016 4.016 16 C -0.171 4.171 17 C -0.151 4.151 18 C 0.018 3.982 19 H 0.082 0.918 20 O -0.289 6.289 21 C -0.019 4.019 22 C 0.001 3.999 23 O -0.370 6.370 24 C -0.011 4.011 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.226 0.774 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.224 0.776 42 H 0.111 0.889 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 25.589 -10.423 -2.911 27.783 hybrid contribution 0.752 0.903 -0.282 1.209 sum 26.341 -9.521 -3.193 28.190 Atomic orbital electron populations 1.69904 1.06281 1.27023 1.50490 1.25004 0.94768 0.99136 0.94418 0.86747 0.80268 0.83557 0.78458 1.20257 1.21285 1.19093 1.20918 0.88618 0.94916 1.51533 0.90574 1.19791 0.97959 0.91413 0.96737 1.21394 0.74779 0.99865 1.01525 1.45697 1.08912 1.06256 1.78889 1.15910 0.80819 0.84832 0.77868 1.90889 1.67233 1.30864 1.58034 1.47254 1.04485 1.06668 1.78877 1.21657 0.94343 0.86323 0.99239 1.21918 0.97425 0.98080 0.99634 1.21559 0.97878 0.92375 1.03313 1.22455 0.91554 0.85817 0.98398 0.91791 1.87947 1.50348 1.18529 1.72100 1.22636 0.98098 0.85474 0.95697 1.22180 0.99093 0.95328 0.83257 1.86594 1.69505 1.55667 1.25208 1.21844 0.93695 0.86814 0.98791 0.92565 0.96044 0.96517 0.92105 0.92163 0.77381 0.91146 0.89993 0.91176 0.89893 0.91079 0.90777 0.92084 0.91818 0.92168 0.92881 0.77562 0.88858 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 7 C -0.52 -14.72 9.66 -34.44 -0.33 -15.06 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 10 C 0.15 3.11 5.62 -4.04 -0.02 3.08 16 11 N -0.74 -12.96 5.47 -65.22 -0.36 -13.32 16 12 C 0.70 12.63 8.30 -86.91 -0.72 11.91 16 13 O -0.59 -12.97 15.79 5.29 0.08 -12.88 16 14 N -0.63 -8.66 2.98 -178.27 -0.53 -9.19 16 15 C 0.11 1.07 6.38 -3.71 -0.02 1.05 16 16 C -0.13 -1.06 6.08 -26.61 -0.16 -1.22 16 17 C -0.11 -0.98 5.53 -26.69 -0.15 -1.13 16 18 C 0.08 0.82 2.76 -26.61 -0.07 0.75 16 19 H 0.06 0.70 7.79 -51.93 -0.40 0.30 16 20 O -0.37 -4.16 9.96 -40.08 -0.40 -4.56 16 21 C 0.06 0.54 6.13 37.16 0.23 0.76 16 22 C 0.08 0.59 7.43 37.16 0.28 0.86 16 23 O -0.56 -5.13 13.62 -40.08 -0.55 -5.67 16 24 C 0.11 1.45 6.07 -3.56 -0.02 1.43 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 26 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 27 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.39 5.71 5.96 -40.82 -0.24 5.47 16 31 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 32 H 0.08 0.77 5.64 -51.93 -0.29 0.48 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.64 8.03 -51.93 -0.42 0.22 16 38 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.38 1.53 9.12 45.56 0.42 1.95 16 42 H 0.09 1.41 6.91 -51.93 -0.36 1.05 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -35.52 347.61 -7.92 -43.44 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.30 Total: 3.53 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -1.21 Total: 3.70 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.11 Total: -49.20 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.86 Total: -23.12 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.52 -7.92 -43.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436319799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.301 kcal (2) G-P(sol) polarization free energy of solvation -35.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds