Wall clock time and date at job start Tue Mar 31 2020 03:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99692 * 2 1 4 4 H 1.48507 * 109.47090 * 269.99879 * 3 2 1 5 5 H 1.48499 * 109.47476 * 29.99593 * 3 2 1 6 6 H 1.48500 * 109.47255 * 150.00259 * 3 2 1 7 7 C 1.37881 * 120.00493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99449 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99892 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46609 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.46960 * 179.97438 * 10 9 7 12 12 C 1.34781 * 120.00112 * 180.02562 * 11 10 9 13 13 O 1.21583 * 119.99782 * 4.97935 * 12 11 10 14 14 N 1.34777 * 120.00020 * 184.98394 * 12 11 10 15 15 C 1.46920 * 120.62966 * 354.77097 * 14 12 11 16 16 C 1.53195 * 108.89195 * 233.67449 * 15 14 12 17 17 C 1.53034 * 109.30987 * 305.29089 * 16 15 14 18 18 C 1.53041 * 109.53698 * 61.37073 * 17 16 15 19 19 H 1.08995 * 109.49951 * 58.61570 * 18 17 16 20 20 O 1.42903 * 109.49835 * 178.68020 * 18 17 16 21 21 C 1.42901 * 113.99967 * 209.99825 * 20 18 17 22 22 C 1.52996 * 109.47087 * 180.02562 * 21 20 18 23 23 O 1.42901 * 109.47562 * 64.99451 * 22 21 20 24 24 C 1.47201 * 120.81180 * 174.90792 * 14 12 11 25 25 H 0.97001 * 120.00049 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47277 * 60.00622 * 9 7 2 27 27 H 1.08997 * 109.47003 * 299.99556 * 9 7 2 28 28 H 1.09007 * 109.47220 * 60.00403 * 10 9 7 29 29 H 1.09002 * 109.47507 * 300.00137 * 10 9 7 30 30 H 0.96996 * 119.99935 * 0.02562 * 11 10 9 31 31 H 1.09008 * 109.58722 * 113.81679 * 15 14 12 32 32 H 1.09004 * 109.59155 * 353.53081 * 15 14 12 33 33 H 1.08998 * 109.49738 * 65.25124 * 16 15 14 34 34 H 1.08999 * 109.49589 * 185.34219 * 16 15 14 35 35 H 1.09001 * 109.45683 * 181.38095 * 17 16 15 36 36 H 1.08995 * 109.46804 * 301.35920 * 17 16 15 37 37 H 1.09003 * 109.47006 * 299.99869 * 21 20 18 38 38 H 1.08996 * 109.47043 * 59.99488 * 21 20 18 39 39 H 1.08994 * 109.47212 * 185.00117 * 22 21 20 40 40 H 1.09001 * 109.47165 * 304.99667 * 22 21 20 41 41 H 0.96698 * 114.00001 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.53945 * 6.53553 * 24 14 12 43 43 H 1.09004 * 109.67937 * 246.23280 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 0.0001 11 7 5.4867 -2.6363 -0.0011 12 6 6.1607 -3.8035 -0.0017 13 8 5.5561 -4.8544 -0.0927 14 7 7.5047 -3.8056 0.0986 15 6 8.2576 -2.5440 0.0943 16 6 9.3331 -2.6119 -0.9946 17 6 10.1975 -3.8556 -0.7753 18 6 9.3259 -5.1093 -0.8785 19 1 8.8501 -5.1420 -1.8586 20 8 10.1392 -6.2713 -0.7041 21 6 9.6662 -7.4225 -1.4064 22 6 10.6083 -8.6001 -1.1482 23 8 10.5597 -8.9547 0.2352 24 6 8.2503 -5.0698 0.2117 25 1 -0.4850 0.8400 0.0004 26 1 3.8753 -0.6795 0.8894 27 1 3.8745 -0.6807 -0.8905 28 1 3.6580 -3.1504 -0.8897 29 1 3.6587 -3.1501 0.8903 30 1 5.9716 -1.7963 -0.0014 31 1 8.7299 -2.3970 1.0657 32 1 7.5806 -1.7150 -0.1121 33 1 8.8567 -2.6678 -1.9734 34 1 9.9585 -1.7207 -0.9442 35 1 10.9788 -3.8932 -1.5344 36 1 10.6537 -3.8111 0.2136 37 1 8.6651 -7.6753 -1.0571 38 1 9.6352 -7.2090 -2.4748 39 1 10.2987 -9.4524 -1.7529 40 1 11.6263 -8.3162 -1.4149 41 1 11.1336 -9.6962 0.4716 42 1 7.5670 -5.9090 0.0816 43 1 8.7218 -5.1313 1.1925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436319799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:20 Heat of formation + Delta-G solvation = -156.341819 kcal Electronic energy + Delta-G solvation = -22957.921795 eV Core-core repulsion = 19423.019044 eV Total energy + Delta-G solvation = -3534.902751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.55669 -39.74746 -38.10083 -37.01683 -36.69579 -34.84328 -33.63916 -32.16167 -31.40658 -29.83006 -27.26909 -25.81709 -24.18740 -23.29034 -22.73295 -22.12995 -20.66378 -19.25809 -18.97314 -18.58014 -17.80818 -17.29667 -16.93235 -16.31621 -16.19854 -16.12787 -15.45187 -15.41912 -15.25832 -15.17359 -14.62089 -14.52191 -14.34835 -14.05603 -13.86346 -13.34693 -13.26862 -13.04020 -12.72040 -12.22061 -12.17425 -12.09728 -12.01775 -11.88731 -11.74474 -11.59343 -11.50129 -11.25885 -11.00431 -10.78209 -10.75140 -10.22562 -9.50563 -8.29210 -6.36837 1.39893 1.43100 1.51187 1.54471 2.04827 2.37988 2.58095 2.97434 3.05671 3.38041 3.73726 3.76907 3.92059 3.99943 4.13666 4.15601 4.22070 4.32101 4.42998 4.45400 4.50069 4.53624 4.65370 4.71315 4.74294 4.75813 4.80871 4.91063 4.99591 5.11499 5.15510 5.29826 5.39956 5.42127 5.43911 5.65417 5.86848 6.16705 6.23352 6.70046 6.92395 6.94258 7.27509 7.49600 8.87648 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.031395 B = 0.002945 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.634926 B = 9505.986440 C =10175.069324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.235 1.235 7 C -0.540 4.540 8 H 0.027 0.973 9 C -0.010 4.010 10 C 0.163 3.837 11 N -0.730 5.730 12 C 0.699 3.301 13 O -0.641 6.641 14 N -0.623 5.623 15 C 0.098 3.902 16 C -0.124 4.124 17 C -0.109 4.109 18 C 0.081 3.919 19 H 0.058 0.942 20 O -0.381 6.381 21 C 0.048 3.952 22 C 0.079 3.921 23 O -0.594 6.594 24 C 0.112 3.888 25 H 0.268 0.732 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.408 0.592 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.039 0.961 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.397 0.603 42 H 0.061 0.939 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.303 -8.170 -3.346 31.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.158 1.158 7 C -0.578 4.578 8 H 0.046 0.954 9 C -0.048 4.048 10 C 0.039 3.961 11 N -0.387 5.387 12 C 0.401 3.599 13 O -0.523 6.523 14 N -0.362 5.362 15 C -0.024 4.024 16 C -0.162 4.162 17 C -0.146 4.146 18 C 0.022 3.978 19 H 0.077 0.923 20 O -0.300 6.300 21 C -0.029 4.029 22 C 0.002 3.998 23 O -0.403 6.403 24 C -0.012 4.012 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.247 0.753 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.247 0.753 42 H 0.080 0.920 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 29.465 -8.338 -3.265 30.796 hybrid contribution -0.454 0.107 -0.154 0.491 sum 29.011 -8.231 -3.419 30.349 Atomic orbital electron populations 1.70080 1.08634 1.28459 1.51939 1.26109 0.95719 1.03964 0.93620 0.85513 0.79707 0.77121 0.79373 1.18903 1.21292 1.15779 1.21238 0.91532 0.93386 1.51645 0.95424 1.19630 0.94391 0.92608 0.98123 1.20907 0.77036 0.98470 0.99691 1.45293 1.07299 1.07172 1.78974 1.16077 0.82164 0.84005 0.77689 1.90859 1.68782 1.32547 1.60090 1.47280 1.03069 1.08560 1.77278 1.22049 0.94772 0.84328 1.01257 1.21909 0.96940 0.99040 0.98351 1.21569 0.97782 0.91136 1.04121 1.22435 0.91383 0.87030 0.96906 0.92349 1.87938 1.50310 1.19035 1.72701 1.22861 0.97645 0.85807 0.96570 1.22283 0.99297 0.95297 0.82938 1.86534 1.70529 1.56966 1.26284 1.21888 0.93570 0.85560 1.00133 0.92315 0.94367 0.94519 0.94153 0.94167 0.75258 0.89179 0.89150 0.91774 0.86706 0.89623 0.90309 0.94297 0.89975 0.89824 0.91583 0.75311 0.92008 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 2 C 0.00 0.17 5.47 84.66 0.46 0.63 16 3 Si 0.96 42.13 27.47 68.60 1.88 44.01 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.23 -9.06 6.54 99.48 0.65 -8.41 16 7 C -0.54 -31.14 9.66 25.60 0.25 -30.89 16 8 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 9 C -0.01 -0.44 4.16 29.85 0.12 -0.31 16 10 C 0.16 6.98 5.62 86.38 0.49 7.46 16 11 N -0.73 -24.70 5.47 -478.52 -2.62 -27.31 16 12 C 0.70 25.04 8.30 179.05 1.49 26.53 16 13 O -0.64 -29.20 15.79 -3.98 -0.06 -29.26 16 14 N -0.62 -16.35 2.98 -836.18 -2.50 -18.85 16 15 C 0.10 1.61 6.38 86.36 0.55 2.16 16 16 C -0.12 -1.52 6.08 30.67 0.19 -1.33 16 17 C -0.11 -1.53 5.53 30.62 0.17 -1.36 16 18 C 0.08 1.65 2.76 30.67 0.08 1.73 16 19 H 0.06 1.24 7.79 -2.39 -0.02 1.22 16 20 O -0.38 -8.19 9.96 -144.34 -1.44 -9.63 16 21 C 0.05 0.87 6.13 71.98 0.44 1.31 16 22 C 0.08 1.07 7.43 71.98 0.53 1.60 16 23 O -0.59 -10.37 13.62 -144.34 -1.97 -12.34 16 24 C 0.11 2.89 6.07 86.31 0.52 3.41 16 25 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 26 H 0.04 1.61 7.20 -2.39 -0.02 1.59 16 27 H 0.04 1.52 7.57 -2.39 -0.02 1.50 16 28 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.41 10.75 5.96 -92.71 -0.55 10.20 16 31 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.09 1.35 5.64 -2.38 -0.01 1.34 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.04 0.86 8.03 -2.39 -0.02 0.84 16 38 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.40 2.83 9.12 -74.06 -0.68 2.15 16 42 H 0.06 1.98 6.91 -2.39 -0.02 1.96 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -80.64 347.61 -1.37 -82.01 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -0.27 Total: 19.77 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 5.30 Total: 10.94 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -4.81 Total: -105.51 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -3.47 Total: -51.23 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.88 Total: 44.01 kcal Total: -80.64 -1.37 -82.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436319799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.328 kcal (2) G-P(sol) polarization free energy of solvation -80.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds