Wall clock time and date at job start Tue Mar 31 2020 03:35:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86805 * 119.99454 * 2 1
4 4 H 1.48494 * 109.47164 * 269.99766 * 3 2 1
5 5 H 1.48496 * 109.47236 * 30.00343 * 3 2 1
6 6 H 1.48507 * 109.46844 * 149.99679 * 3 2 1
7 7 C 1.37873 * 120.00305 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00177 * 359.97438 * 7 2 1
9 9 C 1.50699 * 119.99861 * 180.02562 * 7 2 1
10 10 C 1.53006 * 109.47240 * 179.97438 * 9 7 2
11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 7
12 12 N 1.46506 * 109.46684 * 180.02562 * 11 10 9
13 13 C 1.34777 * 119.99873 * 180.02562 * 12 11 10
14 14 O 1.21592 * 119.99797 * 359.97438 * 13 12 11
15 15 N 1.34774 * 119.99902 * 179.97438 * 13 12 11
16 16 C 1.46499 * 119.99966 * 179.97438 * 15 13 12
17 17 H 1.09012 * 109.47128 * 324.99972 * 16 15 13
18 18 C 1.53001 * 109.47277 * 84.99971 * 16 15 13
19 19 O 1.42897 * 109.46875 * 64.99954 * 18 16 15
20 20 C 1.53003 * 109.47361 * 205.00360 * 16 15 13
21 21 H 1.09000 * 110.26903 * 300.63765 * 20 16 15
22 22 C 1.54939 * 110.31132 * 62.82963 * 20 16 15
23 23 C 1.55304 * 100.94449 * 155.36002 * 22 20 16
24 24 C 1.54378 * 102.25087 * 325.87399 * 23 22 20
25 25 O 1.43235 * 107.59392 * 21.34712 * 24 23 22
26 26 H 0.96992 * 120.00516 * 0.02562 * 1 2 3
27 27 H 1.09000 * 109.47247 * 59.99954 * 9 7 2
28 28 H 1.08996 * 109.47258 * 300.00114 * 9 7 2
29 29 H 1.09000 * 109.46866 * 59.99931 * 10 9 7
30 30 H 1.09001 * 109.46611 * 300.00048 * 10 9 7
31 31 H 1.09000 * 109.47486 * 60.00167 * 11 10 9
32 32 H 1.09001 * 109.47362 * 299.99445 * 11 10 9
33 33 H 0.96995 * 120.00050 * 359.72237 * 12 11 10
34 34 H 0.96999 * 120.00050 * 0.02562 * 15 13 12
35 35 H 1.09003 * 109.46908 * 185.00285 * 18 16 15
36 36 H 1.09003 * 109.46827 * 305.00130 * 18 16 15
37 37 H 0.96704 * 113.99694 * 179.97438 * 19 18 16
38 38 H 1.09001 * 111.12852 * 273.28605 * 22 20 16
39 39 H 1.09006 * 111.12450 * 37.44433 * 22 20 16
40 40 H 1.08999 * 110.85230 * 207.67585 * 23 22 20
41 41 H 1.09006 * 111.01666 * 84.13897 * 23 22 20
42 42 H 1.09007 * 109.82366 * 261.83822 * 24 23 22
43 43 H 1.08998 * 109.83650 * 140.86850 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6179 0.0000
4 1 2.4965 2.0465 -1.4000
5 1 1.4465 2.6527 0.7001
6 1 3.5466 1.4404 0.7001
7 6 2.0046 -1.1940 -0.0005
8 1 1.4647 -2.1294 -0.0005
9 6 3.5116 -1.1939 0.0000
10 6 4.0217 -2.6364 -0.0001
11 6 5.5517 -2.6362 0.0012
12 7 6.0401 -4.0174 0.0004
13 6 7.3652 -4.2636 0.0018
14 8 8.1553 -3.3393 0.0032
15 7 7.8145 -5.5343 0.0017
16 6 9.2549 -5.8019 0.0026
17 1 9.7664 -5.0403 -0.5862
18 6 9.7783 -5.7720 1.4400
19 8 9.1940 -6.8444 2.1820
20 6 9.5180 -7.1801 -0.6074
21 1 9.0027 -7.9512 -0.0347
22 6 9.0596 -7.2098 -2.0872
23 6 9.9562 -8.3456 -2.6510
24 6 11.2573 -8.1695 -1.8388
25 8 10.9289 -7.4470 -0.6464
26 1 -0.4850 0.8399 -0.0004
27 1 3.8745 -0.6806 0.8905
28 1 3.8752 -0.6794 -0.8894
29 1 3.6588 -3.1500 -0.8903
30 1 3.6581 -3.1504 0.8897
31 1 5.9143 -2.1227 0.8916
32 1 5.9158 -2.1221 -0.8884
33 1 5.4099 -4.7547 0.0034
34 1 7.1843 -6.2716 0.0002
35 1 10.8627 -5.8826 1.4342
36 1 9.5123 -4.8221 1.9038
37 1 9.4817 -6.8871 3.1043
38 1 8.0033 -7.4672 -2.1662
39 1 9.2690 -6.2615 -2.5824
40 1 10.1409 -8.2018 -3.7155
41 1 9.5119 -9.3234 -2.4646
42 1 11.9848 -7.6066 -2.4237
43 1 11.6660 -9.1459 -1.5788
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000447968622.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:35:08
Heat of formation + Delta-G solvation = -140.766832 kcal
Electronic energy + Delta-G solvation = -22726.276385 eV
Core-core repulsion = 19192.049016 eV
Total energy + Delta-G solvation = -3534.227369 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 286.173 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-40.45593 -39.43258 -37.18009 -35.60051 -34.62286 -33.30260 -32.42767 -31.62140
-30.37049 -27.92240 -26.87897 -23.84918 -22.78195 -21.94715 -21.10279 -20.79947
-20.28278 -18.33987 -17.66310 -17.17238 -16.77783 -16.38769 -15.73014 -15.63900
-15.03235 -14.77983 -14.63605 -14.22888 -14.00313 -13.87905 -13.79095 -13.43061
-12.69340 -12.50765 -12.45100 -12.14325 -11.98553 -11.89432 -11.73950 -11.20222
-11.11137 -11.05691 -10.88104 -10.34989 -10.17741 -9.99605 -9.84881 -9.80451
-9.66849 -9.25029 -9.22102 -8.68438 -8.54921 -6.05801 -4.04474 2.57901
3.27174 3.32004 3.39522 3.44144 3.56120 4.03865 4.13461 4.22674
4.33997 4.45091 4.50733 4.73498 4.84636 4.88506 5.16561 5.27098
5.28393 5.30256 5.36559 5.38760 5.47233 5.53413 5.61616 5.64507
5.70401 5.82994 6.04853 6.35846 6.38977 6.47995 6.65747 6.70443
6.83141 7.00496 7.24425 7.37693 7.41292 7.76424 8.09352 8.50743
8.68631 8.98057 9.56525 11.07443
Molecular weight = 286.17amu
Principal moments of inertia in cm(-1)
A = 0.031576 B = 0.002617 C = 0.002554
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 886.527458 B =10695.067965 C =10959.430212
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.904 5.904
2 C 0.066 3.934
3 Si 0.880 3.120
4 H -0.277 1.277
5 H -0.288 1.288
6 H -0.264 1.264
7 C -0.522 4.522
8 H 0.072 0.928
9 C -0.011 4.011
10 C -0.113 4.113
11 C 0.133 3.867
12 N -0.740 5.740
13 C 0.704 3.296
14 O -0.595 6.595
15 N -0.736 5.736
16 C 0.172 3.828
17 H 0.105 0.895
18 C 0.066 3.934
19 O -0.570 6.570
20 C 0.082 3.918
21 H 0.085 0.915
22 C -0.152 4.152
23 C -0.156 4.156
24 C 0.051 3.949
25 O -0.374 6.374
26 H 0.263 0.737
27 H 0.019 0.981
28 H 0.015 0.985
29 H 0.060 0.940
30 H 0.060 0.940
31 H 0.062 0.938
32 H 0.062 0.938
33 H 0.396 0.604
34 H 0.397 0.603
35 H 0.059 0.941
36 H 0.053 0.947
37 H 0.378 0.622
38 H 0.085 0.915
39 H 0.081 0.919
40 H 0.082 0.918
41 H 0.077 0.923
42 H 0.069 0.931
43 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.970 -18.972 -1.798 29.083
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.543 5.543
2 C -0.135 4.135
3 Si 0.707 3.293
4 H -0.203 1.203
5 H -0.214 1.214
6 H -0.189 1.189
7 C -0.559 4.559
8 H 0.090 0.910
9 C -0.049 4.049
10 C -0.151 4.151
11 C 0.010 3.990
12 N -0.394 5.394
13 C 0.404 3.596
14 O -0.474 6.474
15 N -0.393 5.393
16 C 0.066 3.934
17 H 0.122 0.878
18 C -0.013 4.013
19 O -0.375 6.375
20 C 0.024 3.976
21 H 0.103 0.897
22 C -0.189 4.189
23 C -0.194 4.194
24 C -0.025 4.025
25 O -0.292 6.292
26 H 0.073 0.927
27 H 0.037 0.963
28 H 0.033 0.967
29 H 0.078 0.922
30 H 0.079 0.921
31 H 0.080 0.920
32 H 0.080 0.920
33 H 0.229 0.771
34 H 0.231 0.769
35 H 0.077 0.923
36 H 0.071 0.929
37 H 0.224 0.776
38 H 0.104 0.896
39 H 0.100 0.900
40 H 0.101 0.899
41 H 0.096 0.904
42 H 0.088 0.912
43 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 22.408 -18.015 -2.230 28.839
hybrid contribution -0.140 0.259 0.341 0.450
sum 22.268 -17.756 -1.889 28.543
Atomic orbital electron populations
1.69910 1.06319 1.26954 1.51068 1.25030 0.94750 0.99248 0.94481
0.86773 0.80422 0.83507 0.78587 1.20251 1.21394 1.18855 1.21098
0.89328 0.94495 1.51026 0.91023 1.19502 0.97226 0.91485 0.96682
1.21706 0.90699 1.00980 1.01700 1.21515 0.95672 0.80019 1.01800
1.45315 1.04720 1.10112 1.79282 1.15942 0.83070 0.82850 0.77768
1.90916 1.55075 1.43152 1.58224 1.44862 1.06974 1.06522 1.80940
1.20794 0.81115 0.96498 0.94992 0.87752 1.22593 0.96751 0.89787
0.92163 1.86402 1.71988 1.52192 1.26966 1.23016 0.82682 0.96311
0.95631 0.89700 1.23324 1.00798 0.99637 0.95165 1.23122 0.95730
0.99578 1.00971 1.23133 0.96988 0.96445 0.85963 1.88388 1.23003
1.76300 1.41545 0.92707 0.96293 0.96717 0.92155 0.92128 0.92001
0.91965 0.77106 0.76944 0.92316 0.92879 0.77567 0.89647 0.90006
0.89914 0.90427 0.91235 0.91338
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16
2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16
3 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16
4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16
7 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16
8 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16
9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16
10 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16
11 C 0.13 2.23 5.67 -4.04 -0.02 2.21 16
12 N -0.74 -10.25 5.56 -65.22 -0.36 -10.61 16
13 C 0.70 10.30 8.53 -86.92 -0.74 9.56 16
14 O -0.60 -11.09 16.01 5.28 0.08 -11.01 16
15 N -0.74 -7.96 4.73 -58.67 -0.28 -8.24 16
16 C 0.17 1.83 2.14 -67.93 -0.15 1.68 16
17 H 0.10 1.28 7.58 -51.92 -0.39 0.89 16
18 C 0.07 0.69 6.66 37.16 0.25 0.94 16
19 O -0.57 -5.41 12.76 -35.23 -0.45 -5.86 16
20 C 0.08 0.72 2.80 -25.71 -0.07 0.65 16
21 H 0.09 0.77 7.62 -51.93 -0.40 0.37 16
22 C -0.15 -1.11 6.29 -24.49 -0.15 -1.27 16
23 C -0.16 -0.93 7.02 -24.79 -0.17 -1.10 16
24 C 0.05 0.36 7.79 37.88 0.30 0.66 16
25 O -0.37 -3.66 10.58 -35.23 -0.37 -4.03 16
26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
27 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16
28 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16
29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16
31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16
32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
33 H 0.40 4.39 8.49 -40.82 -0.35 4.05 16
34 H 0.40 3.39 8.62 -40.82 -0.35 3.03 16
35 H 0.06 0.57 7.91 -51.93 -0.41 0.16 16
36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
37 H 0.38 2.16 9.12 45.56 0.42 2.57 16
38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16
39 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16
40 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16
41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
LS Contribution 353.04 15.07 5.32 5.32
Total: -1.00 -34.54 353.04 -7.89 -42.43
By element:
Atomic # 1 Polarization: 10.87 SS G_CDS: -6.48 Total: 4.39 kcal
Atomic # 6 Polarization: -1.04 SS G_CDS: -1.45 Total: -2.49 kcal
Atomic # 7 Polarization: -46.00 SS G_CDS: 0.13 Total: -45.87 kcal
Atomic # 8 Polarization: -20.16 SS G_CDS: -0.74 Total: -20.90 kcal
Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal
Total LS contribution 5.32 Total: 5.32 kcal
Total: -34.54 -7.89 -42.43 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000447968622.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -98.339 kcal
(2) G-P(sol) polarization free energy of solvation -34.542 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.881 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal
(6) G-S(sol) free energy of system = (1) + (5) -140.767 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds