Wall clock time and date at job start Tue Mar 31 2020 03:35:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86805 * 119.99454 * 2 1
4 4 H 1.48494 * 109.47164 * 269.99766 * 3 2 1
5 5 H 1.48496 * 109.47236 * 30.00343 * 3 2 1
6 6 H 1.48507 * 109.46844 * 149.99679 * 3 2 1
7 7 C 1.37873 * 120.00305 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00177 * 359.97438 * 7 2 1
9 9 C 1.50699 * 119.99861 * 180.02562 * 7 2 1
10 10 C 1.53006 * 109.47240 * 179.97438 * 9 7 2
11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 7
12 12 N 1.46506 * 109.46684 * 180.02562 * 11 10 9
13 13 C 1.34777 * 119.99873 * 180.02562 * 12 11 10
14 14 O 1.21592 * 119.99797 * 359.97438 * 13 12 11
15 15 N 1.34774 * 119.99902 * 179.97438 * 13 12 11
16 16 C 1.46499 * 119.99966 * 179.97438 * 15 13 12
17 17 H 1.09012 * 109.47128 * 324.99972 * 16 15 13
18 18 C 1.53001 * 109.47277 * 84.99971 * 16 15 13
19 19 O 1.42897 * 109.46875 * 64.99954 * 18 16 15
20 20 C 1.53003 * 109.47361 * 205.00360 * 16 15 13
21 21 H 1.09000 * 110.26903 * 300.63765 * 20 16 15
22 22 C 1.54939 * 110.31132 * 62.82963 * 20 16 15
23 23 C 1.55304 * 100.94449 * 155.36002 * 22 20 16
24 24 C 1.54378 * 102.25087 * 325.87399 * 23 22 20
25 25 O 1.43235 * 107.59392 * 21.34712 * 24 23 22
26 26 H 0.96992 * 120.00516 * 0.02562 * 1 2 3
27 27 H 1.09000 * 109.47247 * 59.99954 * 9 7 2
28 28 H 1.08996 * 109.47258 * 300.00114 * 9 7 2
29 29 H 1.09000 * 109.46866 * 59.99931 * 10 9 7
30 30 H 1.09001 * 109.46611 * 300.00048 * 10 9 7
31 31 H 1.09000 * 109.47486 * 60.00167 * 11 10 9
32 32 H 1.09001 * 109.47362 * 299.99445 * 11 10 9
33 33 H 0.96995 * 120.00050 * 359.72237 * 12 11 10
34 34 H 0.96999 * 120.00050 * 0.02562 * 15 13 12
35 35 H 1.09003 * 109.46908 * 185.00285 * 18 16 15
36 36 H 1.09003 * 109.46827 * 305.00130 * 18 16 15
37 37 H 0.96704 * 113.99694 * 179.97438 * 19 18 16
38 38 H 1.09001 * 111.12852 * 273.28605 * 22 20 16
39 39 H 1.09006 * 111.12450 * 37.44433 * 22 20 16
40 40 H 1.08999 * 110.85230 * 207.67585 * 23 22 20
41 41 H 1.09006 * 111.01666 * 84.13897 * 23 22 20
42 42 H 1.09007 * 109.82366 * 261.83822 * 24 23 22
43 43 H 1.08998 * 109.83650 * 140.86850 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6179 0.0000
4 1 2.4965 2.0465 -1.4000
5 1 1.4465 2.6527 0.7001
6 1 3.5466 1.4404 0.7001
7 6 2.0046 -1.1940 -0.0005
8 1 1.4647 -2.1294 -0.0005
9 6 3.5116 -1.1939 0.0000
10 6 4.0217 -2.6364 -0.0001
11 6 5.5517 -2.6362 0.0012
12 7 6.0401 -4.0174 0.0004
13 6 7.3652 -4.2636 0.0018
14 8 8.1553 -3.3393 0.0032
15 7 7.8145 -5.5343 0.0017
16 6 9.2549 -5.8019 0.0026
17 1 9.7664 -5.0403 -0.5862
18 6 9.7783 -5.7720 1.4400
19 8 9.1940 -6.8444 2.1820
20 6 9.5180 -7.1801 -0.6074
21 1 9.0027 -7.9512 -0.0347
22 6 9.0596 -7.2098 -2.0872
23 6 9.9562 -8.3456 -2.6510
24 6 11.2573 -8.1695 -1.8388
25 8 10.9289 -7.4470 -0.6464
26 1 -0.4850 0.8399 -0.0004
27 1 3.8745 -0.6806 0.8905
28 1 3.8752 -0.6794 -0.8894
29 1 3.6588 -3.1500 -0.8903
30 1 3.6581 -3.1504 0.8897
31 1 5.9143 -2.1227 0.8916
32 1 5.9158 -2.1221 -0.8884
33 1 5.4099 -4.7547 0.0034
34 1 7.1843 -6.2716 0.0002
35 1 10.8627 -5.8826 1.4342
36 1 9.5123 -4.8221 1.9038
37 1 9.4817 -6.8871 3.1043
38 1 8.0033 -7.4672 -2.1662
39 1 9.2690 -6.2615 -2.5824
40 1 10.1409 -8.2018 -3.7155
41 1 9.5119 -9.3234 -2.4646
42 1 11.9848 -7.6066 -2.4237
43 1 11.6660 -9.1459 -1.5788
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000447968622.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:35:07
Heat of formation + Delta-G solvation = -169.231803 kcal
Electronic energy + Delta-G solvation = -22727.510719 eV
Core-core repulsion = 19192.049016 eV
Total energy + Delta-G solvation = -3535.461703 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 286.173 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-41.39686 -40.30246 -38.01698 -36.97488 -35.64030 -35.12907 -33.35322 -32.99425
-31.39304 -28.92396 -28.30672 -24.97299 -24.09806 -22.49740 -22.24418 -21.95237
-21.61904 -19.45908 -18.89187 -18.48744 -17.86537 -17.16248 -16.86839 -16.71696
-16.25296 -15.91256 -15.62959 -15.58876 -15.08087 -14.98107 -14.81979 -14.68563
-14.06683 -13.80134 -13.68061 -13.24752 -13.15066 -12.71923 -12.70070 -12.68062
-12.26092 -11.92029 -11.85803 -11.77353 -11.71520 -11.57847 -11.35872 -11.30753
-10.94718 -10.75064 -10.50562 -10.35438 -9.79279 -8.28369 -6.32093 1.37882
1.39592 1.51451 1.56376 2.12339 2.37421 2.82395 3.07482 3.32045
3.40458 3.47962 3.60306 3.98621 4.09192 4.12049 4.17403 4.24203
4.25992 4.47123 4.53143 4.54945 4.58272 4.71684 4.82780 4.90154
4.92334 4.92869 4.99209 5.04317 5.05869 5.23140 5.42426 5.45164
5.54220 5.58135 5.66443 5.99089 6.03488 6.28753 6.75984 6.83037
7.08372 7.32764 7.56149 8.88026
Molecular weight = 286.17amu
Principal moments of inertia in cm(-1)
A = 0.031576 B = 0.002617 C = 0.002554
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 886.527458 B =10695.067965 C =10959.430212
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.951 5.951
2 C 0.004 3.996
3 Si 0.947 3.053
4 H -0.267 1.267
5 H -0.285 1.285
6 H -0.248 1.248
7 C -0.529 4.529
8 H 0.038 0.962
9 C -0.012 4.012
10 C -0.099 4.099
11 C 0.147 3.853
12 N -0.731 5.731
13 C 0.703 3.297
14 O -0.636 6.636
15 N -0.717 5.717
16 C 0.170 3.830
17 H 0.085 0.915
18 C 0.073 3.927
19 O -0.576 6.576
20 C 0.089 3.911
21 H 0.088 0.912
22 C -0.152 4.152
23 C -0.149 4.149
24 C 0.043 3.957
25 O -0.395 6.395
26 H 0.266 0.734
27 H 0.020 0.980
28 H 0.020 0.980
29 H 0.065 0.935
30 H 0.063 0.937
31 H 0.053 0.947
32 H 0.056 0.944
33 H 0.411 0.589
34 H 0.411 0.589
35 H 0.064 0.936
36 H 0.033 0.967
37 H 0.394 0.606
38 H 0.097 0.903
39 H 0.069 0.931
40 H 0.094 0.906
41 H 0.089 0.911
42 H 0.073 0.927
43 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 23.444 -19.930 -2.121 30.843
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.592 5.592
2 C -0.193 4.193
3 Si 0.771 3.229
4 H -0.192 1.192
5 H -0.211 1.211
6 H -0.171 1.171
7 C -0.567 4.567
8 H 0.056 0.944
9 C -0.050 4.050
10 C -0.137 4.137
11 C 0.023 3.977
12 N -0.386 5.386
13 C 0.403 3.597
14 O -0.518 6.518
15 N -0.374 5.374
16 C 0.063 3.937
17 H 0.103 0.897
18 C -0.006 4.006
19 O -0.383 6.383
20 C 0.031 3.969
21 H 0.106 0.894
22 C -0.189 4.189
23 C -0.187 4.187
24 C -0.033 4.033
25 O -0.314 6.314
26 H 0.075 0.925
27 H 0.039 0.961
28 H 0.039 0.961
29 H 0.084 0.916
30 H 0.082 0.918
31 H 0.071 0.929
32 H 0.075 0.925
33 H 0.247 0.753
34 H 0.247 0.753
35 H 0.082 0.918
36 H 0.051 0.949
37 H 0.244 0.756
38 H 0.116 0.884
39 H 0.088 0.912
40 H 0.113 0.887
41 H 0.108 0.892
42 H 0.091 0.909
43 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 23.886 -19.049 -2.544 30.658
hybrid contribution -0.608 0.442 0.464 0.884
sum 23.278 -18.607 -2.080 29.873
Atomic orbital electron populations
1.70055 1.08212 1.28113 1.52783 1.25984 0.95589 1.03435 0.94267
0.85701 0.79523 0.78519 0.79189 1.19224 1.21100 1.17121 1.21466
0.91904 0.93247 1.50125 0.94385 1.19467 0.94039 0.94695 0.96831
1.21470 0.91952 0.98070 1.02180 1.21145 0.93998 0.81422 1.01158
1.45026 1.04919 1.09571 1.79108 1.16035 0.82755 0.83422 0.77504
1.90892 1.56097 1.44739 1.60073 1.44641 1.07527 1.05632 1.79561
1.20825 0.80454 0.97216 0.95174 0.89702 1.22420 0.97066 0.89145
0.91981 1.86356 1.72107 1.51530 1.28353 1.22917 0.82678 0.94826
0.96465 0.89443 1.23326 1.01835 0.99750 0.94030 1.23121 0.94671
0.99501 1.01399 1.23331 0.97765 0.96810 0.85417 1.88362 1.23358
1.76798 1.42898 0.92531 0.96137 0.96137 0.91602 0.91794 0.92858
0.92548 0.75293 0.75254 0.91765 0.94914 0.75618 0.88421 0.91215
0.88728 0.89244 0.90852 0.90184
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16
2 C 0.00 0.23 5.47 84.65 0.46 0.70 16
3 Si 0.95 44.45 27.47 68.60 1.88 46.34 16
4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16
5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16
6 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16
7 C -0.53 -30.02 9.66 25.60 0.25 -29.77 16
8 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16
9 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16
10 C -0.10 -3.54 5.27 30.60 0.16 -3.38 16
11 C 0.15 4.71 5.67 86.38 0.49 5.20 16
12 N -0.73 -19.02 5.56 -478.52 -2.66 -21.68 16
13 C 0.70 19.83 8.53 179.06 1.53 21.36 16
14 O -0.64 -23.56 16.01 -4.01 -0.06 -23.63 16
15 N -0.72 -14.54 4.73 -457.79 -2.17 -16.70 16
16 C 0.17 3.47 2.14 44.99 0.10 3.57 16
17 H 0.08 2.10 7.58 -2.38 -0.02 2.08 16
18 C 0.07 1.48 6.66 71.98 0.48 1.96 16
19 O -0.58 -10.01 12.76 -148.98 -1.90 -11.91 16
20 C 0.09 1.45 2.80 31.26 0.09 1.54 16
21 H 0.09 1.40 7.62 -2.39 -0.02 1.38 16
22 C -0.15 -1.95 6.29 32.05 0.20 -1.75 16
23 C -0.15 -1.42 7.02 31.85 0.22 -1.20 16
24 C 0.04 0.53 7.79 72.45 0.56 1.09 16
25 O -0.39 -7.24 10.58 -148.98 -1.58 -8.82 16
26 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16
27 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16
28 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16
29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16
30 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16
31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16
33 H 0.41 8.19 8.49 -92.71 -0.79 7.40 16
34 H 0.41 6.10 8.62 -92.71 -0.80 5.30 16
35 H 0.06 1.22 7.91 -2.39 -0.02 1.20 16
36 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16
37 H 0.39 3.85 9.12 -74.05 -0.68 3.17 16
38 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16
39 H 0.07 1.08 8.06 -2.38 -0.02 1.06 16
40 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16
41 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16
42 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16
43 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16
Total: -1.00 -74.62 353.04 -2.82 -77.44
By element:
Atomic # 1 Polarization: 20.54 SS G_CDS: -1.29 Total: 19.24 kcal
Atomic # 6 Polarization: -5.79 SS G_CDS: 4.66 Total: -1.13 kcal
Atomic # 7 Polarization: -93.00 SS G_CDS: -4.53 Total: -97.53 kcal
Atomic # 8 Polarization: -40.82 SS G_CDS: -3.54 Total: -44.36 kcal
Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.34 kcal
Total: -74.62 -2.82 -77.44 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000447968622.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -91.794 kcal
(2) G-P(sol) polarization free energy of solvation -74.621 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.415 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.817 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.438 kcal
(6) G-S(sol) free energy of system = (1) + (5) -169.232 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds