Wall clock time and date at job start Tue Mar 31 2020 02:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.46904 * 2 1 4 4 C 1.46900 * 110.99692 * 75.86839 * 3 2 1 5 5 C 1.50699 * 109.47133 * 199.52441 * 4 3 2 6 6 H 1.07999 * 119.99777 * 355.06887 * 5 4 3 7 7 C 1.37871 * 120.00161 * 174.79006 * 5 4 3 8 8 N 1.31522 * 120.00163 * 0.27534 * 7 5 4 9 9 Si 1.86802 * 120.00280 * 180.27317 * 7 5 4 10 10 H 1.48504 * 109.46959 * 89.99940 * 9 7 5 11 11 H 1.48500 * 109.47438 * 209.99849 * 9 7 5 12 12 H 1.48500 * 109.46846 * 330.00467 * 9 7 5 13 13 C 1.46893 * 111.00007 * 199.82035 * 3 2 1 14 14 N 1.46495 * 109.47226 * 81.04916 * 13 3 2 15 15 C 1.47097 * 125.56257 * 269.71497 * 14 13 3 16 16 C 1.54087 * 103.77841 * 179.97438 * 15 14 13 17 17 H 1.09001 * 110.33665 * 118.86893 * 16 15 14 18 18 C 1.50701 * 110.82308 * 241.54613 * 16 15 14 19 19 O 1.20820 * 119.99665 * 111.21655 * 18 16 15 20 20 O 1.34226 * 119.99621 * 291.22141 * 18 16 15 21 21 C 1.45199 * 116.99635 * 179.97438 * 20 18 16 22 22 O 1.45703 * 104.00800 * 0.32725 * 16 15 14 23 23 C 1.33766 * 109.47960 * 359.78634 * 22 16 15 24 24 O 1.21509 * 123.07435 * 180.02562 * 23 22 16 25 25 H 1.09007 * 109.46940 * 174.85020 * 1 2 3 26 26 H 1.08997 * 109.47224 * 294.84444 * 1 2 3 27 27 H 1.08999 * 109.47521 * 54.85427 * 1 2 3 28 28 H 1.09001 * 109.47392 * 240.00939 * 2 1 3 29 29 H 1.08999 * 109.47650 * 120.00159 * 2 1 3 30 30 H 1.09003 * 109.47279 * 79.52250 * 4 3 2 31 31 H 1.09000 * 109.47120 * 319.52662 * 4 3 2 32 32 H 0.96997 * 120.00068 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.47172 * 201.04787 * 13 3 2 34 34 H 1.08999 * 109.47388 * 321.04618 * 13 3 2 35 35 H 1.09001 * 110.55963 * 298.61339 * 15 14 13 36 36 H 1.08997 * 110.55888 * 61.45883 * 15 14 13 37 37 H 1.09002 * 109.47137 * 59.99756 * 21 20 18 38 38 H 1.09004 * 109.47222 * 180.02562 * 21 20 18 39 39 H 1.08996 * 109.47533 * 299.99541 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8793 1.9929 1.3300 5 6 1.9244 3.4939 1.2035 6 1 2.1246 3.9493 0.2449 7 6 1.7043 4.2859 2.3104 8 7 1.4604 3.7314 3.4778 9 14 1.7525 6.1466 2.1521 10 1 0.3938 6.6513 1.8291 11 1 2.2095 6.7408 3.4340 12 1 2.6926 6.5268 1.0672 13 6 3.4114 1.4514 -0.4650 14 7 3.4394 1.4143 -1.9292 15 6 3.5291 0.1988 -2.7527 16 6 3.5207 0.7331 -4.1979 17 1 4.4435 0.4581 -4.7088 18 6 2.3250 0.2139 -4.9541 19 8 1.4390 0.9697 -5.2758 20 8 2.2444 -1.0882 -5.2700 21 6 1.0641 -1.5178 -5.9984 22 8 3.4362 2.1789 -4.0389 23 6 3.3944 2.4828 -2.7369 24 8 3.3219 3.6233 -2.3241 25 1 -0.3633 -1.0236 -0.0922 26 1 -0.3633 0.4318 0.9325 27 1 -0.3634 0.5916 -0.8403 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.6950 1.6576 1.9706 31 1 0.9270 1.6936 1.7677 32 1 1.3060 4.2886 4.2566 33 1 3.8673 2.3781 -0.1162 34 1 3.9676 0.6016 -0.0693 35 1 4.4564 -0.3358 -2.5464 36 1 2.6676 -0.4459 -2.5787 37 1 1.0070 -0.9823 -6.9461 38 1 1.1248 -2.5893 -6.1891 39 1 0.1741 -1.3045 -5.4065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496035905.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:29 Heat of formation + Delta-G solvation = -156.302695 kcal Electronic energy + Delta-G solvation = -23818.233124 eV Core-core repulsion = 20147.498975 eV Total energy + Delta-G solvation = -3670.734149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.98594 -41.32368 -38.90289 -38.34590 -37.58602 -35.93336 -34.66647 -32.24908 -31.40653 -29.17935 -28.41050 -26.61089 -25.47029 -24.32954 -22.94932 -22.32495 -21.33714 -19.45879 -18.78764 -18.56636 -18.13035 -18.10930 -17.37468 -16.99955 -16.52851 -16.15895 -16.08895 -15.66315 -15.19582 -14.93298 -14.83189 -14.40987 -14.28435 -14.17264 -13.63953 -13.42163 -13.31964 -13.00540 -12.92967 -12.79202 -12.65216 -12.56789 -12.33681 -12.14571 -11.89799 -11.81240 -11.66932 -11.51729 -11.28850 -10.61479 -10.10004 -9.07619 -8.21020 -6.27441 0.80260 0.98547 1.35464 1.36514 1.47915 1.51113 1.67131 2.40048 2.47161 2.95129 3.10319 3.30097 3.39468 3.65056 3.86869 4.08146 4.27332 4.30269 4.33386 4.40698 4.42732 4.55607 4.60922 4.73329 4.76500 4.89800 4.96896 5.14394 5.18159 5.22812 5.32778 5.37391 5.71288 6.08012 6.21107 6.31217 6.48180 6.62533 6.85230 6.97829 7.41672 8.88385 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.021074 B = 0.004815 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.332593 B = 5814.148041 C = 6448.688563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.051 3.949 3 N -0.574 5.574 4 C 0.219 3.781 5 C -0.519 4.519 6 H 0.045 0.955 7 C 0.014 3.986 8 N -0.927 5.927 9 Si 0.951 3.049 10 H -0.278 1.278 11 H -0.272 1.272 12 H -0.280 1.280 13 C 0.320 3.680 14 N -0.611 5.611 15 C 0.077 3.923 16 C 0.081 3.919 17 H 0.211 0.789 18 C 0.457 3.543 19 O -0.526 6.526 20 O -0.338 6.338 21 C 0.028 3.972 22 O -0.323 6.323 23 C 0.640 3.360 24 O -0.560 6.560 25 H 0.085 0.915 26 H 0.031 0.969 27 H 0.038 0.962 28 H 0.089 0.911 29 H 0.040 0.960 30 H -0.019 1.019 31 H 0.018 0.982 32 H 0.265 0.735 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.166 0.834 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.144 0.856 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.935 -19.139 -16.359 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 N -0.302 5.302 4 C 0.093 3.907 5 C -0.558 4.558 6 H 0.063 0.937 7 C -0.185 4.185 8 N -0.568 5.568 9 Si 0.777 3.223 10 H -0.204 1.204 11 H -0.196 1.196 12 H -0.206 1.206 13 C 0.110 3.890 14 N -0.360 5.360 15 C -0.045 4.045 16 C 0.024 3.976 17 H 0.227 0.773 18 C 0.299 3.701 19 O -0.415 6.415 20 O -0.253 6.253 21 C -0.065 4.065 22 O -0.233 6.233 23 C 0.394 3.606 24 O -0.446 6.446 25 H 0.103 0.897 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.107 0.893 29 H 0.058 0.942 30 H -0.001 1.001 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.184 0.816 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.162 0.838 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.271 -17.900 -16.578 24.961 hybrid contribution -0.310 1.084 0.601 1.278 sum 4.961 -16.816 -15.978 23.720 Atomic orbital electron populations 1.21698 0.95622 1.01671 1.00631 1.22217 0.96253 0.88178 1.00959 1.61638 1.21087 1.18325 1.29101 1.19275 0.95017 0.93058 0.83338 1.21479 1.47153 0.92787 0.94377 0.93670 1.25608 0.95099 1.02782 0.94995 1.70020 1.49967 1.36745 1.00019 0.85670 0.78318 0.80943 0.77405 1.20358 1.19646 1.20551 1.21596 0.89793 1.02851 0.74759 1.48376 1.74595 1.05796 1.07212 1.23216 1.08700 0.87899 0.84649 1.23699 0.98554 0.77035 0.98312 0.77273 1.23691 0.87314 0.81710 0.77358 1.90773 1.40604 1.58822 1.51257 1.86453 1.46102 1.24152 1.68634 1.23668 0.84514 1.02965 0.95363 1.87344 1.86774 1.24948 1.24225 1.18668 0.76012 0.86044 0.79920 1.91070 1.55978 1.22194 1.75374 0.89664 0.94943 0.94314 0.89257 0.94222 1.00084 0.96397 0.92632 0.91057 0.88038 0.81619 0.87810 0.91846 0.83760 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 9.96 71.98 0.72 -3.71 16 2 C 0.05 1.58 5.54 86.30 0.48 2.06 16 3 N -0.57 -23.87 4.45 -913.17 -4.07 -27.94 16 4 C 0.22 11.39 4.52 85.56 0.39 11.78 16 5 C -0.52 -31.14 8.51 25.60 0.22 -30.92 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 7 C 0.01 0.81 5.46 84.65 0.46 1.27 16 8 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 9 Si 0.95 48.31 29.54 68.60 2.03 50.34 16 10 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 11 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.28 -14.62 7.11 99.48 0.71 -13.91 16 13 C 0.32 11.26 5.56 170.81 0.95 12.21 16 14 N -0.61 -18.54 3.15 -962.58 -3.03 -21.57 16 15 C 0.08 1.21 6.88 86.63 0.60 1.80 16 16 C 0.08 1.42 4.38 30.22 0.13 1.55 16 17 H 0.21 1.21 8.14 -2.39 -0.02 1.19 16 18 C 0.46 9.71 7.15 71.24 0.51 10.22 16 19 O -0.53 -16.85 16.31 28.16 0.46 -16.39 16 20 O -0.34 -4.77 10.57 -51.38 -0.54 -5.31 16 21 C 0.03 0.30 10.56 113.37 1.20 1.50 16 22 O -0.32 -10.37 10.37 -40.98 -0.42 -10.79 16 23 C 0.64 25.08 8.85 129.91 1.15 26.23 16 24 O -0.56 -29.10 17.54 19.66 0.34 -28.76 16 25 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 26 H 0.03 1.20 6.90 -2.39 -0.02 1.18 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.09 2.07 5.59 -2.39 -0.01 2.06 16 29 H 0.04 1.17 8.00 -2.39 -0.02 1.15 16 30 H -0.02 -0.98 8.00 -2.39 -0.02 -1.00 16 31 H 0.02 1.01 6.57 -2.39 -0.02 0.99 16 32 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.07 3.14 7.02 -2.38 -0.02 3.12 16 34 H 0.10 2.62 7.92 -2.39 -0.02 2.61 16 35 H 0.17 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 1.49 6.00 -2.39 -0.01 1.47 16 37 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 38 H 0.14 0.44 8.14 -2.38 -0.02 0.42 16 39 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 Total: -1.00 -88.51 332.99 2.90 -85.60 By element: Atomic # 1 Polarization: -4.35 SS G_CDS: 1.06 Total: -3.29 kcal Atomic # 6 Polarization: 27.19 SS G_CDS: 6.80 Total: 33.98 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -6.81 Total: -105.38 kcal Atomic # 8 Polarization: -61.09 SS G_CDS: -0.16 Total: -61.25 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Total: -88.51 2.90 -85.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496035905.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.700 kcal (2) G-P(sol) polarization free energy of solvation -88.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds