Wall clock time and date at job start Tue Mar 31 2020 03:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48501 * 109.47184 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34772 * 120.00313 * 85.00200 * 13 3 2 15 15 O 1.21608 * 119.99848 * 359.97438 * 14 13 3 16 16 C 1.47490 * 120.00400 * 179.97438 * 14 13 3 17 17 C 1.46454 * 120.19693 * 359.72752 * 16 14 13 18 18 C 1.35524 * 118.96010 * 179.73039 * 17 16 14 19 19 C 1.41348 * 119.54801 * 0.51988 * 18 17 16 20 20 C 1.38331 * 131.72652 * 179.74923 * 19 18 17 21 21 C 1.39914 * 107.12360 * 179.97438 * 20 19 18 22 22 C 1.50701 * 126.00080 * 179.97438 * 21 20 19 23 23 C 1.35274 * 108.00045 * 359.97438 * 21 20 19 24 24 N 1.36644 * 108.94941 * 0.02562 * 23 21 20 25 25 C 1.36308 * 120.20352 * 179.97438 * 16 14 13 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 32 32 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 33 33 H 1.07998 * 120.51922 * 359.96952 * 17 16 14 34 34 H 1.08003 * 120.22545 * 180.26413 * 18 17 16 35 35 H 1.07997 * 126.43825 * 359.97438 * 20 19 18 36 36 H 1.08996 * 109.47089 * 270.00151 * 22 21 20 37 37 H 1.08999 * 109.47182 * 29.99740 * 22 21 20 38 38 H 1.08995 * 109.47144 * 150.00091 * 22 21 20 39 39 H 1.08004 * 125.52599 * 179.97438 * 23 21 20 40 40 H 1.07999 * 119.67105 * 0.02574 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1765 1.0613 2.9140 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3365 2.6299 -0.4649 16 6 0.0762 3.3132 -2.6582 17 6 1.0237 3.3555 -3.7741 18 6 0.6508 3.9586 -4.9291 19 6 -0.6334 4.5407 -5.0285 20 6 -1.2630 5.2108 -6.0619 21 6 -2.5358 5.5700 -5.6050 22 6 -3.5803 6.3194 -6.3913 23 6 -2.6640 5.1263 -4.3336 24 7 -1.5096 4.4948 -3.9653 25 6 -1.1526 3.8868 -2.7963 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8117 0.4042 0.4383 32 1 2.2954 2.1150 -1.9977 33 1 2.0028 2.9097 -3.6794 34 1 1.3319 3.9978 -5.7664 35 1 -0.8498 5.4179 -7.0380 36 1 -3.4557 7.3905 -6.2323 37 1 -3.4678 6.0942 -7.4518 38 1 -4.5728 6.0157 -6.0586 39 1 -3.5371 5.2518 -3.7102 40 1 -1.8507 3.8601 -1.9726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585080832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:19 Heat of formation + Delta-G solvation = 8.699060 kcal Electronic energy + Delta-G solvation = -21970.684038 eV Core-core repulsion = 18750.246916 eV Total energy + Delta-G solvation = -3220.437122 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.13242 -40.89085 -37.56780 -36.91101 -34.63834 -34.20414 -33.28170 -32.18572 -29.41150 -28.84249 -27.90867 -24.75572 -24.05544 -23.53246 -22.38981 -21.34283 -20.88168 -19.78164 -18.78923 -17.80151 -17.32843 -17.07753 -16.66514 -16.23528 -15.78344 -15.45907 -15.30713 -14.91683 -14.53137 -14.44817 -14.13822 -14.04412 -13.86139 -13.79860 -13.58767 -13.06495 -12.66772 -12.63056 -12.50672 -12.34767 -12.31159 -11.94170 -11.77879 -11.60177 -11.39761 -11.24828 -10.98608 -10.41843 -9.89339 -9.32842 -8.82775 -8.41217 -6.41651 -0.34758 0.14735 1.46760 1.49023 1.56681 1.65677 1.70282 2.02877 2.42014 2.47512 2.62294 2.92504 3.46514 3.64681 3.82670 3.85331 3.98349 4.28656 4.30708 4.37909 4.38447 4.52133 4.55434 4.74016 4.80062 4.85512 4.96193 5.01228 5.02331 5.08658 5.18280 5.25156 5.25438 5.28092 5.48232 5.52941 5.61513 5.68521 5.91182 5.95133 6.01998 6.24569 6.52758 6.76175 7.23216 7.34474 8.54668 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.033853 B = 0.003597 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.911171 B = 7782.516742 C = 8163.278608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.129 4.129 3 C 0.256 3.744 4 H 0.024 0.976 5 C -0.628 4.628 6 H 0.043 0.957 7 C 0.008 3.992 8 N -0.914 5.914 9 Si 1.061 2.939 10 H -0.281 1.281 11 H -0.274 1.274 12 H -0.254 1.254 13 N -0.692 5.692 14 C 0.559 3.441 15 O -0.579 6.579 16 C -0.176 4.176 17 C -0.117 4.117 18 C -0.084 4.084 19 C 0.017 3.983 20 C -0.200 4.200 21 C -0.122 4.122 22 C -0.080 4.080 23 C -0.062 4.062 24 N -0.364 5.364 25 C 0.126 3.874 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.262 0.738 32 H 0.402 0.598 33 H 0.149 0.851 34 H 0.175 0.825 35 H 0.166 0.834 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.190 0.810 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.603 8.636 -15.616 23.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 C 0.151 3.849 4 H 0.042 0.958 5 C -0.665 4.665 6 H 0.061 0.939 7 C -0.195 4.195 8 N -0.547 5.547 9 Si 0.884 3.116 10 H -0.206 1.206 11 H -0.200 1.200 12 H -0.178 1.178 13 N -0.340 5.340 14 C 0.347 3.653 15 O -0.461 6.461 16 C -0.182 4.182 17 C -0.137 4.137 18 C -0.102 4.102 19 C -0.086 4.086 20 C -0.225 4.225 21 C -0.126 4.126 22 C -0.137 4.137 23 C -0.188 4.188 24 N -0.029 5.029 25 C 0.003 3.997 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.238 0.762 33 H 0.166 0.834 34 H 0.192 0.808 35 H 0.183 0.817 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.207 0.793 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -16.012 8.231 -13.115 22.274 hybrid contribution 0.865 0.135 -1.675 1.890 sum -15.147 8.366 -14.790 22.763 Atomic orbital electron populations 1.21775 0.95589 1.00380 1.01373 1.22129 0.95244 0.98276 1.01097 1.18775 0.93687 0.89560 0.82856 0.95809 1.22130 0.91288 1.48980 1.04137 0.93896 1.26647 0.96708 0.91196 1.04925 1.70965 1.15006 1.38686 1.30086 0.83797 0.75913 0.78333 0.73593 1.20623 1.19965 1.17811 1.45974 1.14962 1.55590 1.17490 1.18033 0.82156 0.78300 0.86849 1.90730 1.51541 1.61750 1.42099 1.20273 0.95693 1.06409 0.95853 1.22142 0.99243 1.00672 0.91679 1.20809 0.93591 0.96860 0.98963 1.19389 0.92853 1.07066 0.89315 1.21385 0.95367 1.06280 0.99432 1.19949 0.96770 1.02039 0.93885 1.20281 0.95438 0.98976 0.99045 1.22298 0.90819 1.06826 0.98883 1.41601 1.13842 1.37636 1.09823 1.21712 0.96822 0.92756 0.88457 0.93452 0.92525 0.93956 0.92789 0.92850 0.92841 0.76179 0.83376 0.80789 0.81686 0.90645 0.90533 0.90674 0.79292 0.80576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.53 71.98 0.61 -4.60 16 2 C -0.13 -5.61 5.37 30.60 0.16 -5.45 16 3 C 0.26 12.04 1.84 44.25 0.08 12.12 16 4 H 0.02 1.23 6.12 -2.39 -0.01 1.21 16 5 C -0.63 -33.77 8.92 25.60 0.23 -33.54 16 6 H 0.04 2.43 7.96 -2.91 -0.02 2.41 16 7 C 0.01 0.47 5.15 84.66 0.44 0.91 16 8 N -0.91 -54.24 13.70 21.45 0.29 -53.94 16 9 Si 1.06 49.83 26.56 68.60 1.82 51.66 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.25 -11.04 6.34 99.48 0.63 -10.41 16 13 N -0.69 -27.67 4.99 -449.31 -2.24 -29.91 16 14 C 0.56 21.20 6.37 86.68 0.55 21.76 16 15 O -0.58 -24.81 13.42 -4.06 -0.05 -24.86 16 16 C -0.18 -5.41 5.98 -19.15 -0.11 -5.53 16 17 C -0.12 -3.00 9.73 23.78 0.23 -2.77 16 18 C -0.08 -1.85 10.09 22.41 0.23 -1.62 16 19 C 0.02 0.42 6.71 38.98 0.26 0.68 16 20 C -0.20 -4.06 10.91 22.70 0.25 -3.81 16 21 C -0.12 -2.29 6.10 -20.14 -0.12 -2.41 16 22 C -0.08 -0.93 10.37 71.24 0.74 -0.19 16 23 C -0.06 -1.29 11.49 83.26 0.96 -0.33 16 24 N -0.36 -9.18 2.93 -345.32 -1.01 -10.20 16 25 C 0.13 3.51 10.45 83.51 0.87 4.38 16 26 H 0.05 1.84 5.63 -2.39 -0.01 1.83 16 27 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.04 1.71 7.88 -2.39 -0.02 1.69 16 29 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.05 2.43 5.77 -2.39 -0.01 2.42 16 31 H 0.26 15.52 8.73 -92.70 -0.81 14.71 16 32 H 0.40 14.40 6.62 -92.70 -0.61 13.78 16 33 H 0.15 3.39 6.58 -2.91 -0.02 3.37 16 34 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.18 4.64 7.56 -2.91 -0.02 4.62 16 Total: -1.00 -66.46 327.88 4.51 -61.95 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.33 Total: 25.71 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 5.37 Total: -20.40 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -2.96 Total: -94.06 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.05 Total: -24.86 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 1.82 Total: 51.66 kcal Total: -66.46 4.51 -61.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585080832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.649 kcal (2) G-P(sol) polarization free energy of solvation -66.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds