Wall clock time and date at job start Tue Mar 31 2020 03:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47377 * 2 1 4 4 H 1.08998 * 109.47089 * 54.99852 * 3 2 1 5 5 C 1.52997 * 109.47283 * 175.00015 * 3 2 1 6 6 O 1.42898 * 109.47319 * 54.99945 * 5 3 2 7 7 C 1.42902 * 114.00186 * 180.02562 * 6 5 3 8 8 N 1.46504 * 109.46612 * 295.00080 * 3 2 1 9 9 C 1.34776 * 120.00303 * 84.99857 * 8 3 2 10 10 O 1.21589 * 119.99828 * 0.02562 * 9 8 3 11 11 N 1.34771 * 119.99905 * 179.97438 * 9 8 3 12 12 C 1.47018 * 125.65202 * 0.02562 * 11 9 8 13 13 C 1.54327 * 107.27629 * 181.02340 * 12 11 9 14 14 C 1.55159 * 102.93551 * 22.19562 * 13 12 11 15 15 O 1.42900 * 111.00808 * 82.57595 * 14 13 12 16 16 C 1.50702 * 111.00192 * 206.38648 * 14 13 12 17 17 H 1.08009 * 119.99989 * 359.97438 * 16 14 13 18 18 C 1.37880 * 120.00243 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99589 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00229 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46785 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47214 * 119.99373 * 20 18 16 23 23 H 1.48495 * 109.47055 * 239.99609 * 20 18 16 24 24 C 1.47427 * 125.64537 * 179.71900 * 11 9 8 25 25 H 1.08998 * 109.47534 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47416 * 300.00617 * 1 2 3 27 27 H 1.09007 * 109.47138 * 60.00051 * 1 2 3 28 28 H 1.08994 * 109.47414 * 239.99785 * 2 1 3 29 29 H 1.09006 * 109.47399 * 119.99466 * 2 1 3 30 30 H 1.09002 * 109.47153 * 294.99638 * 5 3 2 31 31 H 1.09001 * 109.46832 * 174.99829 * 5 3 2 32 32 H 1.09001 * 109.46918 * 299.99649 * 7 6 5 33 33 H 1.08999 * 109.46857 * 59.99535 * 7 6 5 34 34 H 1.08998 * 109.46946 * 179.97438 * 7 6 5 35 35 H 0.97003 * 119.99387 * 264.99986 * 8 3 2 36 36 H 1.08999 * 109.88743 * 300.44533 * 12 11 9 37 37 H 1.09001 * 109.88160 * 61.60739 * 12 11 9 38 38 H 1.09002 * 110.72024 * 140.55490 * 13 12 11 39 39 H 1.08994 * 110.72236 * 263.65807 * 13 12 11 40 40 H 0.96701 * 114.00090 * 179.97438 * 15 14 13 41 41 H 0.97005 * 119.99339 * 180.02562 * 19 18 16 42 42 H 1.08999 * 110.36565 * 274.74459 * 24 11 9 43 43 H 1.08997 * 110.37219 * 37.06705 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4443 0.1257 6 8 4.1293 0.6404 -0.9121 7 6 5.5565 0.5742 -0.8849 8 7 1.6524 2.0975 -1.2519 9 6 0.4351 2.6644 -1.3671 10 8 -0.3412 2.6327 -0.4318 11 7 0.0788 3.2672 -2.5186 12 6 0.9156 3.3784 -3.7222 13 6 0.1053 4.1671 -4.7725 14 6 -0.9208 4.9451 -3.9070 15 8 -0.3428 6.1399 -3.3774 16 6 -2.1674 5.2550 -4.6951 17 1 -2.2483 4.9378 -5.7244 18 6 -3.2041 5.9444 -4.1026 19 7 -3.1053 6.3310 -2.8495 20 14 -4.7496 6.3278 -5.0794 21 1 -4.6119 5.7876 -6.4558 22 1 -5.9220 5.7023 -4.4166 23 1 -4.9430 7.7988 -5.1424 24 6 -1.2171 3.9190 -2.7819 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8499 1.0378 1.0961 31 1 3.9355 2.4655 0.0366 32 1 5.9689 1.5773 -0.9948 33 1 5.8825 0.1494 0.0645 34 1 5.9067 -0.0546 -1.7034 35 1 2.2719 2.1230 -1.9978 36 1 1.8357 3.9130 -3.4861 37 1 1.1495 2.3847 -4.1042 38 1 0.7496 4.8558 -5.3191 39 1 -0.4010 3.4880 -5.4585 40 1 -0.9469 6.6599 -2.8298 41 1 -3.8349 6.8157 -2.4326 42 1 -1.9495 3.1850 -3.1179 43 1 -1.5737 4.4297 -1.8875 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591967057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:49 Heat of formation + Delta-G solvation = -149.458723 kcal Electronic energy + Delta-G solvation = -24163.149615 eV Core-core repulsion = 20628.545337 eV Total energy + Delta-G solvation = -3534.604278 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.37511 -39.57595 -38.67438 -36.41983 -35.99913 -34.14176 -33.30110 -31.52358 -30.19884 -29.45067 -27.22017 -26.70949 -24.51263 -24.16079 -21.83364 -21.38634 -20.94844 -19.27028 -18.79576 -17.80865 -17.19861 -16.96376 -16.75115 -16.41097 -16.27328 -15.95624 -15.47127 -15.32557 -14.86608 -14.63721 -14.15096 -13.89391 -13.74413 -13.59444 -13.46375 -13.25052 -13.06948 -12.85894 -12.50403 -12.45679 -12.28845 -12.21991 -12.15696 -12.08744 -11.87750 -11.72520 -11.26567 -11.10411 -10.64261 -10.58465 -10.30281 -10.02385 -9.27588 -8.24899 -6.41794 1.41638 1.44844 1.55938 1.75172 2.24437 2.39031 2.84714 3.01364 3.16189 3.75179 3.82361 4.02513 4.13617 4.20472 4.25866 4.35396 4.42743 4.47591 4.59852 4.63737 4.64951 4.67055 4.75781 4.77898 4.94384 5.01642 5.04724 5.06679 5.11072 5.24008 5.34717 5.41866 5.46456 5.50733 5.66371 5.77952 6.04292 6.22696 6.25623 6.65720 7.14353 7.31113 7.40654 7.67563 8.80949 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.028094 B = 0.004057 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.406717 B = 6899.319262 C = 7391.241124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C 0.161 3.839 4 H 0.082 0.918 5 C 0.062 3.938 6 O -0.404 6.404 7 C 0.026 3.974 8 N -0.724 5.724 9 C 0.712 3.288 10 O -0.632 6.632 11 N -0.636 5.636 12 C 0.110 3.890 13 C -0.111 4.111 14 C 0.232 3.768 15 O -0.590 6.590 16 C -0.556 4.556 17 H 0.070 0.930 18 C 0.025 3.975 19 N -0.918 5.918 20 Si 0.966 3.034 21 H -0.263 1.263 22 H -0.283 1.283 23 H -0.279 1.279 24 C 0.130 3.870 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.026 0.974 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.406 0.594 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.377 0.623 41 H 0.270 0.730 42 H 0.039 0.961 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.738 -11.292 2.835 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.056 3.944 4 H 0.100 0.900 5 C -0.015 4.015 6 O -0.324 6.324 7 C -0.070 4.070 8 N -0.381 5.381 9 C 0.414 3.586 10 O -0.514 6.514 11 N -0.373 5.373 12 C -0.013 4.013 13 C -0.149 4.149 14 C 0.192 3.808 15 O -0.399 6.399 16 C -0.594 4.594 17 H 0.088 0.912 18 C -0.176 4.176 19 N -0.558 5.558 20 Si 0.792 3.208 21 H -0.187 1.187 22 H -0.209 1.209 23 H -0.205 1.205 24 C 0.006 3.994 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.242 0.758 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.227 0.773 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.551 -11.580 3.260 19.661 hybrid contribution -1.355 0.878 -0.004 1.614 sum 14.197 -10.702 3.256 18.074 Atomic orbital electron populations 1.21715 0.96916 1.00056 1.00952 1.21789 0.94759 0.95683 1.03386 1.21096 0.93466 0.93650 0.86202 0.90038 1.22792 0.90890 0.95492 0.92313 1.87871 1.21753 1.70643 1.52121 1.22911 0.79487 1.01678 1.02879 1.45009 1.14662 1.60371 1.18023 1.15688 0.82839 0.78348 0.81749 1.90852 1.53663 1.67173 1.39726 1.47849 1.18128 1.58434 1.12839 1.22045 0.93906 1.00534 0.84773 1.22595 0.97445 0.98075 0.96748 1.19886 0.90833 0.81628 0.88497 1.86044 1.44561 1.38069 1.71208 1.21882 1.01071 1.37241 0.99184 0.91160 1.25852 1.01610 0.94435 0.95684 1.69700 1.34366 1.39012 1.12753 0.85377 0.78605 0.77820 0.79042 1.18681 1.20904 1.20495 1.22664 0.82942 0.94332 0.99502 0.92584 0.94130 0.95466 0.91106 0.89200 0.89347 0.92195 0.93513 0.92827 0.88692 0.75800 0.91245 0.89730 0.89747 0.89358 0.77267 0.92036 0.94276 0.94430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 8.51 71.98 0.61 -3.65 16 2 C -0.12 -2.81 5.33 30.59 0.16 -2.65 16 3 C 0.16 4.05 2.66 44.99 0.12 4.17 16 4 H 0.08 2.36 7.58 -2.39 -0.02 2.34 16 5 C 0.06 1.09 5.68 71.98 0.41 1.50 16 6 O -0.40 -7.28 9.65 -148.98 -1.44 -8.72 16 7 C 0.03 0.31 11.01 113.37 1.25 1.55 16 8 N -0.72 -21.95 4.97 -457.80 -2.28 -24.23 16 9 C 0.71 29.22 7.06 179.06 1.26 30.48 16 10 O -0.63 -30.73 13.73 -4.00 -0.05 -30.78 16 11 N -0.64 -26.84 3.32 -829.31 -2.76 -29.60 16 12 C 0.11 3.71 6.15 86.73 0.53 4.25 16 13 C -0.11 -4.27 6.12 31.78 0.19 -4.08 16 14 C 0.23 11.45 0.89 -10.07 -0.01 11.44 16 15 O -0.59 -31.16 13.19 -148.98 -1.97 -33.13 16 16 C -0.56 -29.23 8.25 25.60 0.21 -29.02 16 17 H 0.07 3.56 7.77 -2.91 -0.02 3.54 16 18 C 0.02 1.30 5.30 84.66 0.45 1.74 16 19 N -0.92 -50.85 10.72 21.45 0.23 -50.62 16 20 Si 0.97 42.15 29.54 68.60 2.03 44.17 16 21 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 24 C 0.13 6.54 5.65 86.93 0.49 7.03 16 25 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.04 1.36 7.84 -2.38 -0.02 1.34 16 27 H 0.03 1.01 5.65 -2.38 -0.01 1.00 16 28 H 0.07 1.69 7.73 -2.39 -0.02 1.68 16 29 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.41 10.69 7.37 -92.71 -0.68 10.01 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.09 3.16 8.02 -2.39 -0.02 3.14 16 40 H 0.38 21.08 6.93 -74.06 -0.51 20.57 16 41 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 42 H 0.04 2.05 8.04 -2.39 -0.02 2.03 16 43 H 0.04 2.18 7.64 -2.39 -0.02 2.16 16 Total: -1.00 -66.73 343.34 -0.74 -67.47 By element: Atomic # 1 Polarization: 42.84 SS G_CDS: -0.19 Total: 42.66 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 5.68 Total: 22.77 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -4.80 Total: -104.44 kcal Atomic # 8 Polarization: -69.17 SS G_CDS: -3.46 Total: -72.63 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -66.73 -0.74 -67.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591967057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.985 kcal (2) G-P(sol) polarization free energy of solvation -66.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds