Wall clock time and date at job start Tue Mar 31 2020 03:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99841 * 2 1 4 4 C 1.52996 * 109.47008 * 59.99646 * 3 2 1 5 5 C 1.53005 * 109.46716 * 300.00135 * 3 2 1 6 6 C 1.52994 * 109.47329 * 180.02562 * 3 2 1 7 7 N 1.46507 * 109.46925 * 64.99644 * 6 3 2 8 8 C 1.34782 * 119.99662 * 180.02562 * 7 6 3 9 9 O 1.21590 * 119.99977 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99817 * 180.02562 * 8 7 6 11 11 C 1.47021 * 125.64937 * 359.94913 * 10 8 7 12 12 C 1.54370 * 107.28813 * 181.13182 * 11 10 8 13 13 C 1.55147 * 102.92092 * 22.14333 * 12 11 10 14 14 O 1.42905 * 111.00578 * 82.63751 * 13 12 11 15 15 C 1.50702 * 111.00308 * 206.45025 * 13 12 11 16 16 H 1.08002 * 120.00299 * 356.82421 * 15 13 12 17 17 C 1.37884 * 119.99942 * 176.53980 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.47423 * 125.64837 * 179.97438 * 10 8 7 24 24 H 1.08996 * 109.47199 * 300.00006 * 1 2 3 25 25 H 1.08996 * 109.47251 * 60.00383 * 1 2 3 26 26 H 1.08998 * 109.47185 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46909 * 179.97438 * 4 3 2 28 28 H 1.08996 * 109.47750 * 300.00061 * 4 3 2 29 29 H 1.08999 * 109.47167 * 60.00306 * 4 3 2 30 30 H 1.08999 * 109.46821 * 299.99497 * 5 3 2 31 31 H 1.08996 * 109.47360 * 60.00356 * 5 3 2 32 32 H 1.09001 * 109.46733 * 180.02562 * 5 3 2 33 33 H 1.08997 * 109.47000 * 305.00105 * 6 3 2 34 34 H 1.08997 * 109.47537 * 184.99570 * 6 3 2 35 35 H 0.96995 * 120.00225 * 0.02562 * 7 6 3 36 36 H 1.09001 * 109.88518 * 300.52094 * 11 10 8 37 37 H 1.09002 * 109.88165 * 61.68403 * 11 10 8 38 38 H 1.09001 * 110.70699 * 263.79361 * 12 11 10 39 39 H 1.09008 * 110.75075 * 140.51110 * 12 11 10 40 40 H 0.96701 * 113.99475 * 183.17547 * 14 13 12 41 41 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 42 42 H 1.08996 * 110.36708 * 36.99367 * 23 10 8 43 43 H 1.09002 * 110.46021 * 274.71461 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5586 2.0648 1.2492 5 6 1.5586 2.0647 -1.2493 6 6 3.5354 1.1848 -0.0006 7 7 3.9756 0.5645 -1.2528 8 6 5.2882 0.3558 -1.4763 9 8 6.1070 0.6827 -0.6390 10 7 5.6933 -0.2144 -2.6284 11 6 4.8145 -0.6560 -3.7212 12 6 5.7150 -1.2698 -4.8145 13 6 6.9990 -1.6521 -4.0320 14 8 6.8441 -2.9132 -3.3781 15 6 8.2019 -1.6619 -4.9398 16 1 8.0829 -1.4712 -5.9962 17 6 9.4553 -1.9083 -4.4208 18 7 9.6003 -2.1404 -3.1345 19 14 10.9473 -1.9129 -5.5448 20 1 11.0826 -0.5837 -6.1932 21 1 12.1666 -2.2017 -4.7478 22 1 10.7788 -2.9572 -6.5871 23 6 7.0909 -0.4990 -3.0013 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 2.0023 3.0604 1.2494 28 1 0.4721 2.1508 1.2492 29 1 1.8803 1.5239 2.1392 30 1 1.8803 1.5238 -2.1392 31 1 0.4721 2.1508 -1.2493 32 1 2.0023 3.0603 -1.2495 33 1 3.8514 0.5684 0.8409 34 1 3.9784 2.1766 0.0888 35 1 3.3224 0.3040 -1.9209 36 1 4.1145 -1.4064 -3.3538 37 1 4.2687 0.1965 -4.1255 38 1 5.9388 -0.5344 -5.5873 39 1 5.2487 -2.1553 -5.2467 40 1 7.6028 -3.1714 -2.8369 41 1 10.4821 -2.3142 -2.7694 42 1 7.6597 -0.8161 -2.1272 43 1 7.5508 0.3793 -3.4542 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591969464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:03 Heat of formation + Delta-G solvation = -122.605243 kcal Electronic energy + Delta-G solvation = -23987.273839 eV Core-core repulsion = 20453.834016 eV Total energy + Delta-G solvation = -3533.439824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -39.90184 -38.96873 -37.23591 -34.62435 -34.15510 -32.21446 -32.13903 -29.97919 -27.92050 -27.74891 -27.40604 -25.88438 -24.44039 -22.40624 -20.26035 -19.59260 -19.36328 -17.68620 -17.02420 -16.70275 -15.90660 -15.44481 -15.19128 -15.15664 -14.88828 -14.34709 -14.04613 -13.78040 -13.39427 -13.18112 -12.94261 -12.72342 -12.68843 -12.32098 -12.24488 -12.02516 -11.73360 -11.58527 -11.55019 -11.35448 -10.99055 -10.77582 -10.72263 -10.54457 -10.45744 -10.13738 -9.82470 -9.54044 -9.32140 -8.72349 -8.63699 -8.30160 -7.59934 -6.23363 -4.33192 3.19911 3.26289 3.30937 3.32873 3.51519 3.85684 4.29257 4.46046 4.52401 4.65961 4.74378 5.03655 5.06913 5.10916 5.25982 5.30734 5.46769 5.47506 5.48660 5.56526 5.68672 5.73054 5.79298 5.82993 5.86811 5.99488 6.09505 6.18356 6.57135 6.76064 6.84090 6.94071 7.01310 7.05334 7.29988 7.38808 7.73376 7.79346 8.07544 8.62081 8.71491 9.22836 9.35901 9.47483 10.83755 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.035033 B = 0.003665 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.065672 B = 7637.524694 C = 7908.331131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.373 6.373 3 C 0.098 3.902 4 C -0.175 4.175 5 C -0.178 4.178 6 C 0.157 3.843 7 N -0.746 5.746 8 C 0.716 3.284 9 O -0.600 6.600 10 N -0.628 5.628 11 C 0.106 3.894 12 C -0.116 4.116 13 C 0.249 3.751 14 O -0.583 6.583 15 C -0.539 4.539 16 H 0.066 0.934 17 C 0.071 3.929 18 N -0.893 5.893 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.114 3.886 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.395 0.605 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.383 0.617 41 H 0.271 0.729 42 H 0.082 0.918 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.448 7.233 3.928 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.292 6.292 3 C 0.059 3.941 4 C -0.233 4.233 5 C -0.236 4.236 6 C 0.032 3.968 7 N -0.404 5.404 8 C 0.418 3.582 9 O -0.479 6.479 10 N -0.364 5.364 11 C -0.018 4.018 12 C -0.154 4.154 13 C 0.208 3.792 14 O -0.392 6.392 15 C -0.577 4.577 16 H 0.084 0.916 17 C -0.132 4.132 18 N -0.531 5.531 19 Si 0.731 3.269 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.009 4.009 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.230 0.770 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.234 0.766 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.173 7.320 4.459 19.193 hybrid contribution 0.768 0.139 -0.550 0.955 sum -16.404 7.459 3.909 18.440 Atomic orbital electron populations 1.22797 0.81659 1.02712 1.00028 1.88071 1.19372 1.26781 1.94983 1.21793 0.93400 0.83885 0.95047 1.22338 1.01900 1.01137 0.97928 1.22416 1.01693 1.01290 0.98184 1.21060 0.89719 0.98731 0.87263 1.45036 1.06206 1.67987 1.21125 1.15511 0.82137 0.78844 0.81702 1.90876 1.52582 1.58784 1.45658 1.47882 1.10240 1.62443 1.15880 1.21918 0.93737 0.97315 0.88780 1.22598 0.96549 0.99911 0.96326 1.19616 0.90966 0.80787 0.87852 1.86083 1.46834 1.38430 1.67870 1.21444 0.91233 1.50138 0.94929 0.91592 1.25083 0.99336 0.93546 0.95250 1.69659 1.24675 1.47280 1.11502 0.86460 0.81295 0.78698 0.80413 1.20041 1.21096 1.20033 1.23116 0.78432 0.98928 1.00375 0.93866 0.93821 0.89707 0.91013 0.91756 0.91245 0.91555 0.91957 0.91023 0.91068 0.90486 0.77012 0.92631 0.93347 0.90503 0.90806 0.76598 0.91901 0.89925 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.21 101.05 1.03 1.23 16 2 O -0.37 -4.36 10.29 -35.23 -0.36 -4.72 16 3 C 0.10 1.02 0.80 -90.62 -0.07 0.95 16 4 C -0.18 -1.41 8.25 37.16 0.31 -1.11 16 5 C -0.18 -1.57 8.02 37.16 0.30 -1.27 16 6 C 0.16 2.16 4.84 -4.04 -0.02 2.14 16 7 N -0.75 -12.11 5.15 -65.22 -0.34 -12.45 16 8 C 0.72 15.29 8.49 -86.92 -0.74 14.55 16 9 O -0.60 -15.06 16.60 5.29 0.09 -14.97 16 10 N -0.63 -13.55 3.33 -176.19 -0.59 -14.14 16 11 C 0.11 1.92 6.15 -3.04 -0.02 1.90 16 12 C -0.12 -2.33 6.13 -24.88 -0.15 -2.49 16 13 C 0.25 6.13 0.88 -89.61 -0.08 6.05 16 14 O -0.58 -15.26 13.17 -35.23 -0.46 -15.73 16 15 C -0.54 -14.17 8.26 -34.44 -0.28 -14.46 16 16 H 0.07 1.68 7.78 -52.49 -0.41 1.28 16 17 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 18 N -0.89 -24.21 10.69 55.43 0.59 -23.62 16 19 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 C 0.11 2.82 5.50 -2.52 -0.01 2.81 16 24 H 0.04 0.29 6.42 -51.93 -0.33 -0.04 16 25 H 0.04 0.31 6.42 -51.93 -0.33 -0.03 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.43 6.54 -51.93 -0.34 0.09 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.63 6.57 -51.93 -0.34 0.29 16 31 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.39 5.69 5.97 -40.82 -0.24 5.44 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 39 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 40 H 0.38 10.36 7.26 45.56 0.33 10.69 16 41 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.08 2.32 7.47 -51.93 -0.39 1.93 16 43 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -31.29 341.52 -6.95 -38.24 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -6.17 Total: 14.64 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 0.16 Total: 12.10 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -0.33 Total: -50.20 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.74 Total: -35.42 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.29 -6.95 -38.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591969464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.362 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds