Wall clock time and date at job start Tue Mar 31 2020 03:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48505 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47290 * 300.00141 * 3 2 1 6 6 H 1.48495 * 109.47273 * 59.99944 * 3 2 1 7 7 C 1.37876 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00515 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00065 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 H 1.08999 * 109.47456 * 54.99631 * 16 15 14 18 18 C 1.53008 * 109.46909 * 294.99709 * 16 15 14 19 19 O 1.42894 * 109.47150 * 65.00160 * 18 16 15 20 20 C 1.53004 * 109.47336 * 175.00083 * 16 15 14 21 21 H 1.08993 * 110.45607 * 57.38744 * 20 16 15 22 22 C 1.54513 * 110.51161 * 179.97438 * 20 16 15 23 23 C 1.54486 * 104.06029 * 118.64133 * 22 20 16 24 24 O 1.44423 * 104.80373 * 23.97696 * 23 22 20 25 25 C 1.44423 * 105.27654 * 319.48793 * 24 23 22 26 26 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47827 * 59.99660 * 9 7 2 28 28 H 1.09007 * 109.47098 * 299.99383 * 9 7 2 29 29 H 1.09000 * 109.47211 * 59.99027 * 10 9 7 30 30 H 1.09006 * 109.46815 * 299.99263 * 10 9 7 31 31 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 32 32 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 33 33 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 34 34 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 35 35 H 1.09006 * 109.46605 * 184.99979 * 18 16 15 36 36 H 1.08997 * 109.47374 * 304.99712 * 18 16 15 37 37 H 0.96697 * 114.00152 * 179.97438 * 19 18 16 38 38 H 1.08991 * 110.51171 * 237.28525 * 22 20 16 39 39 H 1.08997 * 110.50868 * 359.97438 * 22 20 16 40 40 H 1.08997 * 110.36907 * 142.80874 * 23 22 20 41 41 H 1.08997 * 110.37067 * 265.14625 * 23 22 20 42 42 H 1.08994 * 110.37198 * 281.68114 * 25 24 23 43 43 H 1.08998 * 110.37278 * 159.34002 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0020 12 6 2.1865 -6.0980 -0.0024 13 8 3.4024 -6.0981 -0.0019 14 7 1.5126 -7.2652 -0.0034 15 6 2.2450 -8.5339 0.0024 16 6 1.2508 -9.6968 0.0068 17 1 0.5670 -9.5935 -0.8357 18 6 0.4554 -9.6827 1.3139 19 8 -0.3452 -8.5006 1.3715 20 6 2.0116 -11.0189 -0.1129 21 1 2.7338 -11.1175 0.6975 22 6 1.0290 -12.2112 -0.1101 23 6 1.2555 -12.8875 -1.4804 24 8 2.5939 -12.5038 -1.8645 25 6 2.7156 -11.1158 -1.4846 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6240 -2.5575 0.8881 29 1 2.8713 -3.6047 0.8890 30 1 2.8725 -3.6040 -0.8911 31 1 0.5426 -4.9308 -0.0020 32 1 0.5426 -7.2652 -0.0034 33 1 2.8721 -8.5954 -0.8871 34 1 2.8713 -8.5880 0.8928 35 1 -0.1892 -10.5607 1.3563 36 1 1.1442 -9.6966 2.1585 37 1 -0.8780 -8.4251 2.1749 38 1 1.2671 -12.9004 0.7000 39 1 0.0012 -11.8588 -0.0230 40 1 1.1840 -13.9710 -1.3853 41 1 0.5320 -12.5211 -2.2087 42 1 2.2160 -10.4777 -2.2134 43 1 3.7656 -10.8383 -1.3926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619531019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:11 Heat of formation + Delta-G solvation = -144.276880 kcal Electronic energy + Delta-G solvation = -22708.905989 eV Core-core repulsion = 19174.526413 eV Total energy + Delta-G solvation = -3534.379576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.31971 -39.30199 -37.62999 -35.32829 -34.59009 -33.41563 -32.70635 -30.62691 -29.40463 -28.49093 -26.06121 -24.37872 -23.15359 -22.28325 -20.93448 -20.65934 -20.08887 -18.12992 -17.50023 -16.88825 -16.31371 -16.16292 -15.84952 -15.65484 -15.23744 -14.89494 -14.46444 -14.43097 -13.89197 -13.74656 -13.42724 -13.38851 -13.01432 -12.62396 -12.34528 -12.22631 -11.92388 -11.73826 -11.29724 -11.11978 -11.10239 -11.01614 -10.90152 -10.57643 -10.27010 -10.24820 -10.16333 -9.81119 -9.48728 -9.18927 -8.82065 -8.43131 -8.11006 -6.05446 -4.07592 3.13958 3.31066 3.38536 3.44326 3.60017 3.68896 3.75311 4.10528 4.37879 4.44066 4.46470 4.52953 4.72695 4.79964 4.84599 4.96286 5.02045 5.13866 5.19157 5.27237 5.31675 5.33104 5.38387 5.45851 5.51997 5.64361 5.75103 5.91992 6.39510 6.40183 6.47871 6.81449 6.87787 7.13392 7.26485 7.48729 7.66893 7.69776 7.94819 8.32315 8.62217 8.98361 9.16398 9.56889 11.06350 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.037390 B = 0.002534 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.691276 B =11046.515592 C =11458.421121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.141 3.859 11 N -0.739 5.739 12 C 0.696 3.304 13 O -0.606 6.606 14 N -0.743 5.743 15 C 0.149 3.851 16 C -0.093 4.093 17 H 0.088 0.912 18 C 0.081 3.919 19 O -0.570 6.570 20 C -0.112 4.112 21 H 0.091 0.909 22 C -0.154 4.154 23 C 0.043 3.957 24 O -0.376 6.376 25 C 0.048 3.952 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.393 0.607 32 H 0.404 0.596 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.383 0.617 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 -26.828 1.523 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.393 5.393 12 C 0.396 3.604 13 O -0.486 6.486 14 N -0.403 5.403 15 C 0.023 3.977 16 C -0.112 4.112 17 H 0.106 0.894 18 C 0.003 3.997 19 O -0.377 6.377 20 C -0.131 4.131 21 H 0.109 0.891 22 C -0.192 4.192 23 C -0.034 4.034 24 O -0.294 6.294 25 C -0.028 4.028 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.226 0.774 32 H 0.241 0.759 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.232 0.768 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.550 -26.711 0.842 26.769 hybrid contribution -0.984 0.952 0.741 1.557 sum -2.534 -25.759 1.583 25.932 Atomic orbital electron populations 1.69971 1.06080 1.26669 1.50702 1.25002 0.94896 0.99401 0.95103 0.86459 0.80195 0.83366 0.77556 1.19576 1.20976 1.20981 1.21110 0.93312 0.90393 1.50893 0.92180 1.19329 0.94278 0.91114 0.97774 1.21550 0.95585 0.80581 1.00491 1.45489 1.09796 1.05279 1.78705 1.16108 0.85572 0.80681 0.78039 1.90868 1.11943 1.86894 1.58906 1.45148 1.10261 1.03869 1.80977 1.21031 0.93277 0.81409 1.01955 1.21482 0.97162 0.93957 0.98613 0.89396 1.22257 0.93204 0.87202 0.97019 1.86294 1.61677 1.43182 1.46504 1.22441 0.97683 0.93322 0.99668 0.89069 1.23094 1.00238 0.97128 0.98704 1.23424 0.84950 1.00423 0.94565 1.89148 1.31085 1.26099 1.83087 1.23554 1.01954 0.83483 0.93855 0.92970 0.95992 0.96001 0.92952 0.92928 0.77424 0.75858 0.91894 0.92085 0.93295 0.93333 0.76844 0.90364 0.89986 0.89130 0.92175 0.91638 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.17 5.61 -4.04 -0.02 3.15 16 11 N -0.74 -13.97 5.56 -65.22 -0.36 -14.33 16 12 C 0.70 13.06 8.57 -86.92 -0.74 12.31 16 13 O -0.61 -13.72 16.34 5.28 0.09 -13.64 16 14 N -0.74 -10.31 5.01 -65.23 -0.33 -10.64 16 15 C 0.15 1.70 4.97 -4.04 -0.02 1.68 16 16 C -0.09 -0.71 1.62 -90.62 -0.15 -0.86 16 17 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 18 C 0.08 0.54 6.25 37.16 0.23 0.77 16 19 O -0.57 -4.42 10.88 -35.23 -0.38 -4.80 16 20 C -0.11 -0.74 2.68 -89.05 -0.24 -0.98 16 21 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 22 C -0.15 -0.82 6.14 -25.16 -0.15 -0.97 16 23 C 0.04 0.28 7.63 37.94 0.29 0.57 16 24 O -0.38 -3.58 11.65 -35.23 -0.41 -3.99 16 25 C 0.05 0.39 6.19 37.94 0.23 0.62 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.39 6.52 8.49 -40.82 -0.35 6.17 16 32 H 0.40 4.97 6.30 -40.82 -0.26 4.71 16 33 H 0.06 0.76 7.30 -51.93 -0.38 0.38 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.24 6.38 -51.93 -0.33 -0.09 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.38 1.61 9.12 45.56 0.42 2.03 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.37 6.45 -51.93 -0.34 0.03 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.53 7.82 -51.93 -0.41 0.12 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 348.46 15.07 5.25 5.25 Total: -1.00 -34.85 348.46 -7.81 -42.65 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.25 Total: 5.58 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.12 Total: 3.01 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.05 Total: -50.73 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.71 Total: -22.42 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.85 -7.81 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619531019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.626 kcal (2) G-P(sol) polarization free energy of solvation -34.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds