Wall clock time and date at job start Tue Mar 31 2020 03:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48505 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47290 * 300.00141 * 3 2 1 6 6 H 1.48495 * 109.47273 * 59.99944 * 3 2 1 7 7 C 1.37876 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00515 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00065 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 H 1.08999 * 109.47456 * 54.99631 * 16 15 14 18 18 C 1.53008 * 109.46909 * 294.99709 * 16 15 14 19 19 O 1.42894 * 109.47150 * 65.00160 * 18 16 15 20 20 C 1.53004 * 109.47336 * 175.00083 * 16 15 14 21 21 H 1.08993 * 110.45607 * 57.38744 * 20 16 15 22 22 C 1.54513 * 110.51161 * 179.97438 * 20 16 15 23 23 C 1.54486 * 104.06029 * 118.64133 * 22 20 16 24 24 O 1.44423 * 104.80373 * 23.97696 * 23 22 20 25 25 C 1.44423 * 105.27654 * 319.48793 * 24 23 22 26 26 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47827 * 59.99660 * 9 7 2 28 28 H 1.09007 * 109.47098 * 299.99383 * 9 7 2 29 29 H 1.09000 * 109.47211 * 59.99027 * 10 9 7 30 30 H 1.09006 * 109.46815 * 299.99263 * 10 9 7 31 31 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 32 32 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 33 33 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 34 34 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 35 35 H 1.09006 * 109.46605 * 184.99979 * 18 16 15 36 36 H 1.08997 * 109.47374 * 304.99712 * 18 16 15 37 37 H 0.96697 * 114.00152 * 179.97438 * 19 18 16 38 38 H 1.08991 * 110.51171 * 237.28525 * 22 20 16 39 39 H 1.08997 * 110.50868 * 359.97438 * 22 20 16 40 40 H 1.08997 * 110.36907 * 142.80874 * 23 22 20 41 41 H 1.08997 * 110.37067 * 265.14625 * 23 22 20 42 42 H 1.08994 * 110.37198 * 281.68114 * 25 24 23 43 43 H 1.08998 * 110.37278 * 159.34002 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0020 12 6 2.1865 -6.0980 -0.0024 13 8 3.4024 -6.0981 -0.0019 14 7 1.5126 -7.2652 -0.0034 15 6 2.2450 -8.5339 0.0024 16 6 1.2508 -9.6968 0.0068 17 1 0.5670 -9.5935 -0.8357 18 6 0.4554 -9.6827 1.3139 19 8 -0.3452 -8.5006 1.3715 20 6 2.0116 -11.0189 -0.1129 21 1 2.7338 -11.1175 0.6975 22 6 1.0290 -12.2112 -0.1101 23 6 1.2555 -12.8875 -1.4804 24 8 2.5939 -12.5038 -1.8645 25 6 2.7156 -11.1158 -1.4846 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6240 -2.5575 0.8881 29 1 2.8713 -3.6047 0.8890 30 1 2.8725 -3.6040 -0.8911 31 1 0.5426 -4.9308 -0.0020 32 1 0.5426 -7.2652 -0.0034 33 1 2.8721 -8.5954 -0.8871 34 1 2.8713 -8.5880 0.8928 35 1 -0.1892 -10.5607 1.3563 36 1 1.1442 -9.6966 2.1585 37 1 -0.8780 -8.4251 2.1749 38 1 1.2671 -12.9004 0.7000 39 1 0.0012 -11.8588 -0.0230 40 1 1.1840 -13.9710 -1.3853 41 1 0.5320 -12.5211 -2.2087 42 1 2.2160 -10.4777 -2.2134 43 1 3.7656 -10.8383 -1.3926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619531019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:10 Heat of formation + Delta-G solvation = -172.430162 kcal Electronic energy + Delta-G solvation = -22710.126807 eV Core-core repulsion = 19174.526413 eV Total energy + Delta-G solvation = -3535.600394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.17933 -40.49820 -38.34254 -36.65847 -35.87711 -34.83307 -34.33829 -31.70281 -30.81829 -29.17363 -27.25720 -26.05557 -23.70676 -23.19362 -22.64398 -21.92957 -20.94675 -19.34104 -18.45530 -18.16090 -17.64548 -16.96859 -16.94130 -16.52009 -16.41604 -16.35269 -15.81261 -15.33089 -15.14814 -14.91214 -14.84140 -14.34046 -14.24079 -13.75491 -13.58394 -13.19117 -13.00643 -12.93234 -12.50616 -12.49101 -12.35072 -12.22799 -11.89654 -11.66942 -11.62851 -11.52929 -11.43467 -11.13749 -10.78250 -10.75610 -10.60142 -10.26491 -9.61607 -8.23292 -6.33467 1.41789 1.42449 1.55974 1.84456 2.23003 2.42314 3.01229 3.11356 3.12937 3.40578 3.59774 3.92057 3.94260 4.00540 4.17469 4.24157 4.35010 4.39243 4.49759 4.53089 4.57157 4.63917 4.69102 4.77914 4.82658 4.86455 4.87858 4.91191 5.04657 5.12927 5.28367 5.34172 5.54343 5.60620 5.64394 5.80756 5.85435 6.15650 6.19315 6.79841 6.93353 7.24839 7.35938 7.68216 8.88982 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.037390 B = 0.002534 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.691276 B =11046.515592 C =11458.421121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.161 3.839 11 N -0.734 5.734 12 C 0.693 3.307 13 O -0.647 6.647 14 N -0.721 5.721 15 C 0.143 3.857 16 C -0.080 4.080 17 H 0.089 0.911 18 C 0.081 3.919 19 O -0.591 6.591 20 C -0.105 4.105 21 H 0.095 0.905 22 C -0.146 4.146 23 C 0.035 3.965 24 O -0.402 6.402 25 C 0.043 3.957 26 H 0.266 0.734 27 H 0.008 0.992 28 H 0.009 0.991 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.405 0.595 32 H 0.414 0.586 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.667 -27.672 2.045 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.037 3.963 11 N -0.389 5.389 12 C 0.393 3.607 13 O -0.530 6.530 14 N -0.381 5.381 15 C 0.019 3.981 16 C -0.099 4.099 17 H 0.108 0.892 18 C 0.003 3.997 19 O -0.400 6.400 20 C -0.124 4.124 21 H 0.113 0.887 22 C -0.183 4.183 23 C -0.041 4.041 24 O -0.321 6.321 25 C -0.034 4.034 26 H 0.075 0.925 27 H 0.026 0.974 28 H 0.027 0.973 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.240 0.760 32 H 0.254 0.746 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.250 0.750 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.296 -27.605 1.375 27.734 hybrid contribution -0.802 1.140 0.565 1.504 sum -3.098 -26.465 1.941 26.716 Atomic orbital electron populations 1.70068 1.07528 1.27929 1.51123 1.25882 0.95827 1.03116 0.94431 0.85375 0.78927 0.78682 0.77921 1.19025 1.20187 1.20127 1.21494 0.93586 0.91903 1.51376 0.92348 1.19126 0.94201 0.91651 0.96314 1.21053 0.94614 0.81258 0.99417 1.45198 1.10258 1.04455 1.78968 1.16267 0.85119 0.81517 0.77844 1.90839 1.13847 1.87530 1.60772 1.45065 1.10780 1.03175 1.79034 1.21247 0.94213 0.81460 1.01204 1.21388 0.96287 0.92632 0.99625 0.89229 1.22296 0.93485 0.87882 0.96000 1.86218 1.62129 1.43803 1.47837 1.22372 0.97962 0.93296 0.98816 0.88686 1.23076 1.00485 0.96403 0.98357 1.23639 0.83739 1.01424 0.95335 1.89121 1.32847 1.26588 1.83556 1.23594 1.01937 0.83116 0.94718 0.92534 0.97366 0.97291 0.93996 0.94034 0.75963 0.74585 0.92719 0.92868 0.90718 0.93369 0.75032 0.89129 0.88563 0.87888 0.91785 0.92003 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16 2 C 0.01 0.34 5.46 84.65 0.46 0.81 16 3 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.55 -31.12 9.11 25.60 0.23 -30.89 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 9 C 0.02 1.28 5.09 29.85 0.15 1.43 16 10 C 0.16 7.35 5.61 86.38 0.48 7.83 16 11 N -0.73 -27.73 5.56 -478.52 -2.66 -30.39 16 12 C 0.69 25.90 8.57 179.05 1.53 27.44 16 13 O -0.65 -29.61 16.34 -4.01 -0.07 -29.68 16 14 N -0.72 -19.43 5.01 -478.54 -2.40 -21.83 16 15 C 0.14 3.17 4.97 86.38 0.43 3.60 16 16 C -0.08 -1.08 1.62 -10.79 -0.02 -1.10 16 17 H 0.09 1.23 8.08 -2.39 -0.02 1.21 16 18 C 0.08 0.86 6.25 71.98 0.45 1.32 16 19 O -0.59 -7.78 10.88 -148.98 -1.62 -9.40 16 20 C -0.11 -1.21 2.68 -9.77 -0.03 -1.24 16 21 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 22 C -0.15 -1.15 6.14 31.61 0.19 -0.96 16 23 C 0.03 0.39 7.63 72.49 0.55 0.94 16 24 O -0.40 -7.36 11.65 -148.98 -1.74 -9.10 16 25 C 0.04 0.67 6.19 72.49 0.45 1.12 16 26 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.01 0.43 8.14 -2.39 -0.02 0.42 16 28 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.41 13.26 8.49 -92.71 -0.79 12.47 16 32 H 0.41 9.59 6.30 -92.71 -0.58 9.00 16 33 H 0.05 1.32 7.30 -2.38 -0.02 1.30 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 0.45 6.38 -2.38 -0.02 0.44 16 36 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.40 2.42 9.12 -74.06 -0.68 1.75 16 38 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.10 0.51 6.45 -2.39 -0.02 0.50 16 40 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.06 0.98 7.82 -2.39 -0.02 0.96 16 43 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -74.51 348.46 -2.29 -76.80 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -1.02 Total: 21.69 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 4.90 Total: 10.29 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -4.77 Total: -106.83 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -3.42 Total: -48.18 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -74.51 -2.29 -76.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619531019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.634 kcal (2) G-P(sol) polarization free energy of solvation -74.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds