Wall clock time and date at job start Tue Mar 31 2020 03:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 110.28733 * 2 1 4 4 O 1.42899 * 109.47190 * 302.12205 * 3 2 1 5 5 C 1.54382 * 110.41526 * 237.81477 * 2 1 3 6 6 N 1.48561 * 104.59608 * 264.91338 * 5 2 1 7 7 C 1.46893 * 111.00239 * 200.95711 * 6 5 2 8 8 C 1.50702 * 109.47286 * 170.00111 * 7 6 5 9 9 O 1.21299 * 119.99786 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00257 * 180.02562 * 8 7 6 11 11 C 1.37096 * 120.00130 * 179.97438 * 10 8 7 12 12 H 1.08003 * 120.00266 * 359.97438 * 11 10 8 13 13 C 1.38959 * 119.99868 * 180.02562 * 11 10 8 14 14 N 1.31404 * 119.99950 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99547 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47373 * 60.00227 * 15 13 11 17 17 H 1.48505 * 109.46669 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47221 * 299.99624 * 15 13 11 19 19 C 1.48558 * 104.22085 * 320.51572 * 6 5 2 20 20 C 1.54259 * 110.32499 * 122.12335 * 2 1 3 21 21 C 1.53007 * 110.32026 * 0.02562 * 20 2 1 22 22 C 1.52997 * 110.32840 * 237.89796 * 20 2 1 23 23 O 1.42898 * 109.47319 * 180.02562 * 22 20 2 24 24 H 1.08992 * 109.47543 * 297.87846 * 1 2 3 25 25 H 1.09009 * 109.46755 * 57.87715 * 1 2 3 26 26 H 1.09000 * 109.46797 * 177.87051 * 1 2 3 27 27 H 1.08996 * 109.47206 * 62.12627 * 3 2 1 28 28 H 1.09004 * 109.46936 * 182.12777 * 3 2 1 29 29 H 0.96698 * 113.99937 * 180.02562 * 4 3 2 30 30 H 1.08998 * 110.41088 * 23.68899 * 5 2 1 31 31 H 1.08998 * 110.41267 * 146.13349 * 5 2 1 32 32 H 1.08995 * 109.47119 * 289.99911 * 7 6 5 33 33 H 1.09002 * 109.47011 * 50.00211 * 7 6 5 34 34 H 0.97005 * 120.00120 * 359.97438 * 10 8 7 35 35 H 0.96998 * 119.99772 * 180.02562 * 14 13 11 36 36 H 1.09000 * 110.41322 * 280.70622 * 19 6 5 37 37 H 1.09004 * 110.41245 * 158.25979 * 19 6 5 38 38 H 1.08994 * 109.47096 * 298.56904 * 21 20 2 39 39 H 1.08994 * 109.47350 * 58.57172 * 21 20 2 40 40 H 1.09005 * 109.46849 * 178.57326 * 21 20 2 41 41 H 1.09002 * 109.47153 * 59.99730 * 22 20 2 42 42 H 1.09001 * 109.46832 * 299.99921 * 22 20 2 43 43 H 0.96701 * 113.99881 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 8 1.5537 2.1303 -1.1410 5 6 2.0685 -0.7707 -1.2245 6 7 2.3185 -2.1458 -0.7211 7 6 3.2705 -2.8575 -1.5842 8 6 3.6873 -4.1438 -0.9189 9 8 3.2361 -4.4385 0.1678 10 7 4.5622 -4.9663 -1.5307 11 6 4.9418 -6.1363 -0.9252 12 1 4.5401 -6.3987 0.0424 13 6 5.8443 -6.9840 -1.5559 14 7 6.3335 -6.6645 -2.7329 15 14 6.3609 -8.5785 -0.7311 16 1 5.1652 -9.4300 -0.5071 17 1 7.3238 -9.2976 -1.6034 18 1 7.0042 -8.2756 0.5727 19 6 2.8828 -1.9400 0.6377 20 6 2.0658 -0.7692 1.2251 21 6 0.9048 -1.2997 2.0688 22 6 2.9654 0.1359 2.0692 23 8 3.4515 -0.5942 3.1973 24 1 -0.3634 0.4805 0.9083 25 1 -0.3633 0.5465 -0.8704 26 1 -0.3633 -1.0270 -0.0382 27 1 1.7358 1.9425 0.9084 28 1 3.1497 1.4198 -0.0382 29 1 1.8502 3.0484 -1.2059 30 1 1.3244 -0.7869 -2.0208 31 1 2.9960 -0.3211 -1.5789 32 1 2.7976 -3.0799 -2.5407 33 1 4.1483 -2.2328 -1.7494 34 1 4.9234 -4.7305 -2.3996 35 1 6.9632 -7.2565 -3.1733 36 1 3.9378 -1.6734 0.5748 37 1 2.7519 -2.8367 1.2435 38 1 0.3087 -0.4632 2.4333 39 1 0.2805 -1.9521 1.4585 40 1 1.2984 -1.8617 2.9158 41 1 2.3936 0.9980 2.4127 42 1 3.8075 0.4753 1.4661 43 1 4.0297 -0.0811 3.7783 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704314648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:37 Heat of formation + Delta-G solvation = -122.621411 kcal Electronic energy + Delta-G solvation = -24303.567413 eV Core-core repulsion = 20770.126889 eV Total energy + Delta-G solvation = -3533.440525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.51837 -38.14719 -36.79345 -36.22511 -34.16405 -33.47443 -31.22341 -30.95131 -28.38967 -27.84410 -25.45126 -24.81331 -24.68468 -22.68471 -20.67379 -19.15853 -18.02676 -18.00307 -17.69805 -16.78179 -15.82536 -15.73325 -15.50974 -15.00366 -14.66090 -14.29185 -14.08166 -13.76209 -13.62626 -13.47395 -13.16204 -12.92830 -12.78674 -12.11570 -12.10334 -11.78019 -11.51231 -11.43575 -11.28453 -11.17606 -11.04227 -10.78959 -10.49842 -10.40133 -10.39362 -10.34367 -10.17507 -10.04650 -9.70495 -9.42836 -8.32971 -7.96128 -7.84086 -6.37926 -3.78450 3.22999 3.28172 3.32955 3.93856 3.97102 4.04411 4.17956 4.37475 4.55219 4.77979 4.85923 5.06891 5.08031 5.21331 5.23209 5.26065 5.30006 5.40845 5.43312 5.54759 5.73547 5.75785 5.84948 5.91014 6.00072 6.03500 6.11339 6.18116 6.29623 6.32757 6.34191 6.39133 6.64353 6.86360 7.28901 7.38389 7.42372 7.58956 7.61944 8.10258 8.66296 9.22080 9.58345 10.10688 10.79915 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.025023 B = 0.004020 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.709638 B = 6963.222668 C = 7472.041450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.052 4.052 3 C 0.083 3.917 4 O -0.567 6.567 5 C 0.046 3.954 6 N -0.489 5.489 7 C 0.035 3.965 8 C 0.443 3.557 9 O -0.577 6.577 10 N -0.564 5.564 11 C -0.298 4.298 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.903 5.903 15 Si 0.930 3.070 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.055 3.945 20 C -0.058 4.058 21 C -0.126 4.126 22 C 0.084 3.916 23 O -0.561 6.561 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.375 0.625 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.392 0.608 35 H 0.271 0.729 36 H 0.032 0.968 37 H 0.120 0.880 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.507 18.634 4.739 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.053 4.053 3 C 0.005 3.995 4 O -0.372 6.372 5 C -0.082 4.082 6 N -0.212 5.212 7 C -0.097 4.097 8 C 0.229 3.771 9 O -0.462 6.462 10 N -0.200 5.200 11 C -0.428 4.428 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.072 4.072 20 C -0.058 4.058 21 C -0.183 4.183 22 C 0.006 3.994 23 O -0.366 6.366 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.221 0.779 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.225 0.775 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.138 0.862 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.798 16.911 4.958 19.270 hybrid contribution 2.126 0.917 -0.048 2.315 sum -5.672 17.828 4.910 19.342 Atomic orbital electron populations 1.21814 0.92936 1.02551 1.01324 1.21297 0.97244 0.91965 0.94802 1.22450 0.96690 0.92548 0.87832 1.86510 1.75211 1.28561 1.46901 1.23186 0.99692 0.88800 0.96528 1.65244 1.40601 1.13132 1.02239 1.22080 0.94714 0.95418 0.97499 1.19724 0.83611 0.86257 0.87539 1.90462 1.58148 1.75719 1.21845 1.41842 1.38934 1.19136 1.20097 1.19659 1.23053 0.95946 1.04107 0.87955 1.25251 0.96897 0.99833 0.95933 1.69605 1.31646 1.38619 1.14578 0.85924 0.78435 0.81140 0.78755 1.19881 1.21012 1.19937 1.23328 0.94530 0.98641 0.90718 1.21412 0.95923 0.95141 0.93362 1.21781 0.96620 1.00415 0.99530 1.22409 0.96045 0.93394 0.87521 1.86587 1.69131 1.42378 1.38478 0.92954 0.92249 0.91282 0.93458 0.93643 0.77860 0.89943 0.94250 0.89186 0.93554 0.77497 0.91869 0.94946 0.86242 0.93431 0.91377 0.91925 0.93809 0.93933 0.78001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 7.12 37.16 0.26 -1.27 16 2 C -0.05 -0.65 0.83 -153.13 -0.13 -0.78 16 3 C 0.08 0.82 4.65 37.16 0.17 0.99 16 4 O -0.57 -5.46 12.71 -35.23 -0.45 -5.91 16 5 C 0.05 0.67 5.38 -2.18 -0.01 0.66 16 6 N -0.49 -8.77 5.33 -231.41 -1.23 -10.01 16 7 C 0.03 0.66 5.55 -4.98 -0.03 0.64 16 8 C 0.44 10.82 7.50 -10.99 -0.08 10.73 16 9 O -0.58 -15.82 13.24 5.54 0.07 -15.75 16 10 N -0.56 -14.67 5.29 -10.96 -0.06 -14.73 16 11 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 12 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 13 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 14 N -0.90 -24.97 13.05 55.50 0.72 -24.25 16 15 Si 0.93 21.41 29.55 -169.99 -5.02 16.38 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 19 C 0.06 1.00 4.20 -2.18 -0.01 0.99 16 20 C -0.06 -0.80 0.83 -153.12 -0.13 -0.93 16 21 C -0.13 -1.74 7.10 37.16 0.26 -1.48 16 22 C 0.08 0.97 4.65 37.16 0.17 1.14 16 23 O -0.56 -7.04 12.73 -35.23 -0.45 -7.49 16 24 H 0.05 0.55 6.84 -51.93 -0.36 0.20 16 25 H 0.06 0.70 7.62 -51.92 -0.40 0.30 16 26 H 0.07 0.90 6.76 -51.93 -0.35 0.55 16 27 H 0.05 0.40 6.80 -51.93 -0.35 0.05 16 28 H 0.05 0.44 6.75 -51.93 -0.35 0.09 16 29 H 0.38 1.87 9.12 45.56 0.42 2.29 16 30 H 0.08 1.18 7.86 -51.93 -0.41 0.77 16 31 H 0.04 0.56 7.51 -51.93 -0.39 0.17 16 32 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 33 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 34 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 35 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.03 0.61 7.68 -51.93 -0.40 0.21 16 37 H 0.12 2.65 5.77 -51.93 -0.30 2.35 16 38 H 0.05 0.55 6.88 -51.93 -0.36 0.19 16 39 H 0.07 1.01 6.71 -51.93 -0.35 0.66 16 40 H 0.06 0.95 7.66 -51.93 -0.40 0.55 16 41 H 0.04 0.41 6.80 -51.93 -0.35 0.06 16 42 H 0.04 0.46 6.75 -51.93 -0.35 0.11 16 43 H 0.37 2.81 9.12 45.56 0.42 3.23 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -33.47 332.22 -6.10 -39.57 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -4.94 Total: 14.57 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 0.25 Total: 2.60 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.57 Total: -48.98 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.82 Total: -29.15 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.47 -6.10 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704314648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.050 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds