Wall clock time and date at job start Tue Mar 31 2020 03:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 110.28733 * 2 1 4 4 O 1.42899 * 109.47190 * 302.12205 * 3 2 1 5 5 C 1.54382 * 110.41526 * 237.81477 * 2 1 3 6 6 N 1.48561 * 104.59608 * 264.91338 * 5 2 1 7 7 C 1.46893 * 111.00239 * 200.95711 * 6 5 2 8 8 C 1.50702 * 109.47286 * 170.00111 * 7 6 5 9 9 O 1.21299 * 119.99786 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00257 * 180.02562 * 8 7 6 11 11 C 1.37096 * 120.00130 * 179.97438 * 10 8 7 12 12 H 1.08003 * 120.00266 * 359.97438 * 11 10 8 13 13 C 1.38959 * 119.99868 * 180.02562 * 11 10 8 14 14 N 1.31404 * 119.99950 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99547 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47373 * 60.00227 * 15 13 11 17 17 H 1.48505 * 109.46669 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47221 * 299.99624 * 15 13 11 19 19 C 1.48558 * 104.22085 * 320.51572 * 6 5 2 20 20 C 1.54259 * 110.32499 * 122.12335 * 2 1 3 21 21 C 1.53007 * 110.32026 * 0.02562 * 20 2 1 22 22 C 1.52997 * 110.32840 * 237.89796 * 20 2 1 23 23 O 1.42898 * 109.47319 * 180.02562 * 22 20 2 24 24 H 1.08992 * 109.47543 * 297.87846 * 1 2 3 25 25 H 1.09009 * 109.46755 * 57.87715 * 1 2 3 26 26 H 1.09000 * 109.46797 * 177.87051 * 1 2 3 27 27 H 1.08996 * 109.47206 * 62.12627 * 3 2 1 28 28 H 1.09004 * 109.46936 * 182.12777 * 3 2 1 29 29 H 0.96698 * 113.99937 * 180.02562 * 4 3 2 30 30 H 1.08998 * 110.41088 * 23.68899 * 5 2 1 31 31 H 1.08998 * 110.41267 * 146.13349 * 5 2 1 32 32 H 1.08995 * 109.47119 * 289.99911 * 7 6 5 33 33 H 1.09002 * 109.47011 * 50.00211 * 7 6 5 34 34 H 0.97005 * 120.00120 * 359.97438 * 10 8 7 35 35 H 0.96998 * 119.99772 * 180.02562 * 14 13 11 36 36 H 1.09000 * 110.41322 * 280.70622 * 19 6 5 37 37 H 1.09004 * 110.41245 * 158.25979 * 19 6 5 38 38 H 1.08994 * 109.47096 * 298.56904 * 21 20 2 39 39 H 1.08994 * 109.47350 * 58.57172 * 21 20 2 40 40 H 1.09005 * 109.46849 * 178.57326 * 21 20 2 41 41 H 1.09002 * 109.47153 * 59.99730 * 22 20 2 42 42 H 1.09001 * 109.46832 * 299.99921 * 22 20 2 43 43 H 0.96701 * 113.99881 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 8 1.5537 2.1303 -1.1410 5 6 2.0685 -0.7707 -1.2245 6 7 2.3185 -2.1458 -0.7211 7 6 3.2705 -2.8575 -1.5842 8 6 3.6873 -4.1438 -0.9189 9 8 3.2361 -4.4385 0.1678 10 7 4.5622 -4.9663 -1.5307 11 6 4.9418 -6.1363 -0.9252 12 1 4.5401 -6.3987 0.0424 13 6 5.8443 -6.9840 -1.5559 14 7 6.3335 -6.6645 -2.7329 15 14 6.3609 -8.5785 -0.7311 16 1 5.1652 -9.4300 -0.5071 17 1 7.3238 -9.2976 -1.6034 18 1 7.0042 -8.2756 0.5727 19 6 2.8828 -1.9400 0.6377 20 6 2.0658 -0.7692 1.2251 21 6 0.9048 -1.2997 2.0688 22 6 2.9654 0.1359 2.0692 23 8 3.4515 -0.5942 3.1973 24 1 -0.3634 0.4805 0.9083 25 1 -0.3633 0.5465 -0.8704 26 1 -0.3633 -1.0270 -0.0382 27 1 1.7358 1.9425 0.9084 28 1 3.1497 1.4198 -0.0382 29 1 1.8502 3.0484 -1.2059 30 1 1.3244 -0.7869 -2.0208 31 1 2.9960 -0.3211 -1.5789 32 1 2.7976 -3.0799 -2.5407 33 1 4.1483 -2.2328 -1.7494 34 1 4.9234 -4.7305 -2.3996 35 1 6.9632 -7.2565 -3.1733 36 1 3.9378 -1.6734 0.5748 37 1 2.7519 -2.8367 1.2435 38 1 0.3087 -0.4632 2.4333 39 1 0.2805 -1.9521 1.4585 40 1 1.2984 -1.8617 2.9158 41 1 2.3936 0.9980 2.4127 42 1 3.8075 0.4753 1.4661 43 1 4.0297 -0.0811 3.7783 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704314648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:35 Heat of formation + Delta-G solvation = -153.563922 kcal Electronic energy + Delta-G solvation = -24304.909181 eV Core-core repulsion = 20770.126889 eV Total energy + Delta-G solvation = -3534.782293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.68032 -39.98985 -37.60066 -37.30766 -36.01088 -34.92311 -33.30142 -32.02653 -29.61996 -29.10810 -26.74641 -26.63666 -25.56335 -24.07250 -21.84673 -21.06526 -19.90287 -19.03169 -18.80677 -17.66575 -17.49562 -17.00172 -16.64130 -16.40923 -16.25146 -15.73182 -15.50659 -15.31657 -14.89771 -14.53354 -14.49004 -14.23652 -13.89088 -13.55049 -13.46985 -13.31129 -13.06586 -12.91098 -12.63151 -12.45151 -12.36367 -12.27971 -12.14795 -12.01969 -11.59273 -11.52217 -11.43408 -11.13072 -11.02759 -10.52091 -10.20909 -10.02669 -9.38114 -8.48039 -5.96971 1.38327 1.39946 1.51317 2.01718 2.27518 2.82331 3.12618 3.18846 3.24356 3.39214 3.55371 3.91357 3.97949 4.16811 4.20201 4.21499 4.25871 4.38183 4.42554 4.45954 4.50159 4.55140 4.59442 4.70615 4.76845 4.87200 4.93453 4.96162 5.07595 5.18844 5.28810 5.32656 5.38100 5.43868 5.61910 5.85165 5.92725 6.09198 6.58790 6.94673 7.00898 7.10924 7.52750 8.09285 8.69410 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.025023 B = 0.004020 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.709638 B = 6963.222668 C = 7472.041450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.049 4.049 3 C 0.089 3.911 4 O -0.582 6.582 5 C 0.047 3.953 6 N -0.505 5.505 7 C 0.045 3.955 8 C 0.439 3.561 9 O -0.612 6.612 10 N -0.572 5.572 11 C -0.334 4.334 12 H 0.078 0.922 13 C -0.012 4.012 14 N -0.921 5.921 15 Si 0.994 3.006 16 H -0.272 1.272 17 H -0.268 1.268 18 H -0.272 1.272 19 C 0.061 3.939 20 C -0.055 4.055 21 C -0.121 4.121 22 C 0.085 3.915 23 O -0.590 6.590 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.397 0.603 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.278 0.722 36 H 0.017 0.983 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.570 20.790 4.665 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.050 4.050 3 C 0.011 3.989 4 O -0.391 6.391 5 C -0.080 4.080 6 N -0.229 5.229 7 C -0.086 4.086 8 C 0.226 3.774 9 O -0.498 6.498 10 N -0.210 5.210 11 C -0.464 4.464 12 H 0.096 0.904 13 C -0.211 4.211 14 N -0.562 5.562 15 Si 0.817 3.183 16 H -0.197 1.197 17 H -0.193 1.193 18 H -0.197 1.197 19 C -0.067 4.067 20 C -0.056 4.056 21 C -0.178 4.178 22 C 0.008 3.992 23 O -0.398 6.398 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.246 0.754 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.229 0.771 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -7.849 19.114 4.868 21.228 hybrid contribution 2.117 0.267 -0.034 2.134 sum -5.732 19.381 4.834 20.781 Atomic orbital electron populations 1.21762 0.92418 1.01586 1.02370 1.21279 0.97599 0.93520 0.92594 1.22332 0.96823 0.90743 0.89023 1.86450 1.75491 1.30360 1.46758 1.23262 1.00168 0.86925 0.97686 1.65201 1.40047 1.15517 1.02183 1.21972 0.95975 0.92978 0.97681 1.20680 0.82278 0.87381 0.87051 1.90461 1.59007 1.76867 1.23491 1.41907 1.39655 1.19088 1.20306 1.19628 1.24844 0.97821 1.04072 0.90389 1.26046 0.96115 1.02568 0.96409 1.69667 1.31591 1.39690 1.15216 0.84986 0.78214 0.77100 0.78009 1.19730 1.19273 1.19691 1.23070 0.94566 0.98497 0.90582 1.21382 0.95732 0.94173 0.94302 1.21715 0.96682 1.00924 0.98475 1.22446 0.96297 0.93305 0.87170 1.86545 1.69943 1.44027 1.39264 0.91174 0.91924 0.93225 0.91070 0.93142 0.75360 0.89643 0.93553 0.87365 0.91761 0.77071 0.91238 0.96438 0.91166 0.90461 0.93207 0.94045 0.90411 0.93108 0.75602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 7.12 71.98 0.51 -2.16 16 2 C -0.05 -1.12 0.83 -51.29 -0.04 -1.16 16 3 C 0.09 1.41 4.65 71.98 0.33 1.74 16 4 O -0.58 -8.99 12.71 -148.98 -1.89 -10.88 16 5 C 0.05 1.30 5.38 86.45 0.47 1.77 16 6 N -0.51 -18.32 5.33 -886.05 -4.73 -23.05 16 7 C 0.05 1.75 5.55 85.56 0.47 2.23 16 8 C 0.44 22.24 7.50 87.66 0.66 22.90 16 9 O -0.61 -35.45 13.24 -3.09 -0.04 -35.49 16 10 N -0.57 -30.80 5.29 -306.98 -1.62 -32.42 16 11 C -0.33 -19.63 9.68 84.04 0.81 -18.82 16 12 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 13 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 14 N -0.92 -50.88 13.05 21.67 0.28 -50.59 16 15 Si 0.99 44.00 29.55 68.60 2.03 46.03 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 C 0.06 2.27 4.20 86.45 0.36 2.63 16 20 C -0.06 -1.47 0.83 -51.28 -0.04 -1.51 16 21 C -0.12 -3.30 7.10 71.98 0.51 -2.78 16 22 C 0.09 1.76 4.65 71.98 0.33 2.10 16 23 O -0.59 -14.21 12.73 -148.98 -1.90 -16.10 16 24 H 0.07 1.25 6.84 -2.39 -0.02 1.23 16 25 H 0.06 1.31 7.62 -2.38 -0.02 1.30 16 26 H 0.05 1.25 6.76 -2.39 -0.02 1.24 16 27 H 0.07 0.83 6.80 -2.39 -0.02 0.81 16 28 H 0.05 0.77 6.75 -2.38 -0.02 0.75 16 29 H 0.40 2.35 9.12 -74.06 -0.68 1.68 16 30 H 0.09 2.31 7.86 -2.39 -0.02 2.30 16 31 H 0.05 1.23 7.51 -2.39 -0.02 1.21 16 32 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 33 H 0.06 2.25 7.88 -2.39 -0.02 2.23 16 34 H 0.40 20.23 7.90 -92.70 -0.73 19.50 16 35 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.02 0.68 7.68 -2.39 -0.02 0.66 16 37 H 0.07 3.33 5.77 -2.39 -0.01 3.32 16 38 H 0.08 1.61 6.88 -2.39 -0.02 1.59 16 39 H 0.05 1.51 6.71 -2.39 -0.02 1.50 16 40 H 0.04 1.28 7.66 -2.38 -0.02 1.26 16 41 H 0.08 1.10 6.80 -2.39 -0.02 1.08 16 42 H 0.05 0.97 6.75 -2.39 -0.02 0.95 16 43 H 0.39 5.32 9.12 -74.06 -0.68 4.64 16 Total: -1.00 -75.06 332.22 -4.05 -79.11 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -1.03 Total: 36.64 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 4.85 Total: 6.76 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -6.07 Total: -106.06 kcal Atomic # 8 Polarization: -58.64 SS G_CDS: -3.83 Total: -62.47 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -75.06 -4.05 -79.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704314648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.456 kcal (2) G-P(sol) polarization free energy of solvation -75.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds