Wall clock time and date at job start Tue Mar 31 2020 02:34:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52997 * 109.47069 * 2 1
4 4 N 1.46501 * 109.46649 * 180.02562 * 3 2 1
5 5 C 1.37313 * 125.82835 * 90.00690 * 4 3 2
6 6 C 1.50702 * 125.58074 * 359.97438 * 5 4 3
7 7 O 1.42893 * 109.47337 * 90.00126 * 6 5 4
8 8 N 1.29414 * 108.83659 * 179.97438 * 5 4 3
9 9 N 1.40177 * 108.13250 * 359.97438 * 8 5 4
10 10 C 1.46503 * 126.34922 * 179.97438 * 9 8 5
11 11 N 1.46499 * 109.46811 * 90.02949 * 10 9 8
12 12 C 1.46504 * 119.99977 * 269.99267 * 11 10 9
13 13 C 1.36932 * 120.00378 * 89.99666 * 11 10 9
14 14 H 1.08005 * 120.00051 * 22.51665 * 13 11 10
15 15 C 1.38818 * 120.00446 * 202.51357 * 13 11 10
16 16 N 1.31617 * 119.99681 * 11.19902 * 15 13 11
17 17 Si 1.86803 * 120.00160 * 191.20455 * 15 13 11
18 18 H 1.48498 * 109.47041 * 59.99832 * 17 15 13
19 19 H 1.48500 * 109.46658 * 179.97438 * 17 15 13
20 20 H 1.48496 * 109.46940 * 299.99583 * 17 15 13
21 21 C 1.34810 * 125.82944 * 269.69114 * 4 3 2
22 22 S 1.71198 * 126.30332 * 0.02562 * 21 4 3
23 23 H 1.09003 * 109.46681 * 299.99850 * 1 2 3
24 24 H 1.08997 * 109.46954 * 59.99605 * 1 2 3
25 25 H 1.09000 * 109.46895 * 179.97438 * 1 2 3
26 26 H 1.09003 * 109.46681 * 240.00150 * 2 1 3
27 27 H 1.08997 * 109.46954 * 120.00394 * 2 1 3
28 28 H 1.08997 * 109.47092 * 300.00292 * 3 2 1
29 29 H 1.09003 * 109.46785 * 60.00230 * 3 2 1
30 30 H 1.09004 * 109.46646 * 210.00181 * 6 5 4
31 31 H 1.08997 * 109.47170 * 329.99913 * 6 5 4
32 32 H 0.96704 * 114.00244 * 179.97438 * 7 6 5
33 33 H 1.09004 * 109.46605 * 210.02478 * 10 9 8
34 34 H 1.08999 * 109.47423 * 330.02665 * 10 9 8
35 35 H 1.09001 * 109.46789 * 94.23191 * 12 11 10
36 36 H 1.08998 * 109.47675 * 214.23587 * 12 11 10
37 37 H 1.09007 * 109.46726 * 334.23648 * 12 11 10
38 38 H 0.96996 * 119.99995 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4424 -0.0006
5 6 4.3083 1.4426 -1.1143
6 6 3.8273 1.4425 -2.5424
7 8 3.6749 2.7896 -2.9939
8 7 5.5462 1.4430 -0.7366
9 7 5.5747 1.4436 0.6649
10 6 6.7720 1.4436 1.5091
11 7 7.1711 2.8248 1.7904
12 6 8.1018 3.5154 0.8942
13 6 6.6742 3.4704 2.8910
14 1 6.3015 2.9002 3.7291
15 6 6.6497 4.8578 2.9297
16 7 6.8930 5.5510 1.8377
17 14 6.2713 5.7410 4.5317
18 1 7.2851 5.3716 5.5520
19 1 6.3068 7.2087 4.3081
20 1 4.9219 5.3449 5.0085
21 6 4.2946 1.4480 1.0920
22 16 3.7701 1.4560 2.7216
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5139 -0.8899
25 1 -0.3633 -1.0277 -0.0005
26 1 1.8933 -0.5138 -0.8900
27 1 1.8934 -0.5139 0.8899
28 1 1.6767 1.9563 -0.8899
29 1 1.6767 1.9562 0.8900
30 1 4.5550 0.9288 -3.1708
31 1 2.8681 0.9284 -2.6027
32 1 3.3675 2.8659 -3.9076
33 1 6.5560 0.9298 2.4458
34 1 7.5818 0.9297 0.9911
35 1 7.5389 4.0901 0.1587
36 1 8.7337 4.1877 1.4744
37 1 8.7252 2.7820 0.3825
38 1 6.8762 6.5204 1.8647
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000769836297.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:34:39
Heat of formation + Delta-G solvation = 64.732397 kcal
Electronic energy + Delta-G solvation = -21431.366146 eV
Core-core repulsion = 18245.262420 eV
Total energy + Delta-G solvation = -3186.103726 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 286.120 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-41.97676 -37.19072 -36.38796 -35.41724 -32.89528 -31.99032 -31.00068 -27.94530
-26.87667 -26.07872 -25.19790 -22.91529 -21.92391 -21.14581 -20.54374 -17.88610
-17.59159 -16.89297 -16.21162 -15.74443 -15.47612 -15.07438 -14.77267 -14.55354
-14.34654 -13.84402 -13.45276 -13.18267 -12.55738 -12.36497 -12.20802 -12.07712
-11.59750 -11.53764 -11.24233 -11.00494 -10.86785 -10.77481 -10.62057 -10.49102
-10.41701 -10.14330 -10.10190 -10.07198 -9.59948 -8.75277 -7.32060 -6.82155
-6.63262 -5.95001 -3.38243 1.92792 2.00834 2.21317 3.01145 3.19716
3.41866 3.43796 3.50877 4.20698 4.41555 4.51587 4.62629 4.70250
4.80521 5.00613 5.10448 5.19550 5.27860 5.35804 5.37559 5.49271
5.61425 5.76265 5.86956 5.96943 6.13774 6.19453 6.29354 6.53079
6.80806 7.10202 7.28351 7.31606 7.54007 7.80610 7.91020 8.12928
8.99405 9.53526 9.96776 11.07356
Molecular weight = 286.12amu
Principal moments of inertia in cm(-1)
A = 0.016805 B = 0.006223 C = 0.005406
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1665.796150 B = 4498.157588 C = 5177.779775
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.137 4.137
3 C 0.114 3.886
4 N -0.492 5.492
5 C 0.233 3.767
6 C 0.165 3.835
7 O -0.559 6.559
8 N -0.265 5.265
9 N -0.353 5.353
10 C 0.337 3.663
11 N -0.538 5.538
12 C 0.148 3.852
13 C -0.254 4.254
14 H 0.095 0.905
15 C 0.014 3.986
16 N -0.895 5.895
17 Si 0.917 3.083
18 H -0.278 1.278
19 H -0.290 1.290
20 H -0.273 1.273
21 C 0.467 3.533
22 S -0.624 6.624
23 H 0.062 0.938
24 H 0.054 0.946
25 H 0.059 0.941
26 H 0.061 0.939
27 H 0.079 0.921
28 H 0.090 0.910
29 H 0.110 0.890
30 H 0.085 0.915
31 H 0.072 0.928
32 H 0.388 0.612
33 H 0.107 0.893
34 H 0.082 0.918
35 H 0.038 0.962
36 H 0.059 0.941
37 H 0.009 0.991
38 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.055 -10.174 -12.069 17.721
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.175 4.175
3 C -0.008 4.008
4 N -0.194 5.194
5 C -0.047 4.047
6 C 0.084 3.916
7 O -0.364 6.364
8 N -0.089 5.089
9 N -0.155 5.155
10 C 0.131 3.869
11 N -0.251 5.251
12 C 0.004 3.996
13 C -0.385 4.385
14 H 0.112 0.888
15 C -0.187 4.187
16 N -0.536 5.536
17 Si 0.745 3.255
18 H -0.204 1.204
19 H -0.216 1.216
20 H -0.198 1.198
21 C 0.105 3.895
22 S -0.497 6.497
23 H 0.081 0.919
24 H 0.073 0.927
25 H 0.078 0.922
26 H 0.079 0.921
27 H 0.098 0.902
28 H 0.108 0.892
29 H 0.128 0.872
30 H 0.103 0.897
31 H 0.090 0.910
32 H 0.237 0.763
33 H 0.125 0.875
34 H 0.100 0.900
35 H 0.057 0.943
36 H 0.077 0.923
37 H 0.027 0.973
38 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -6.896 -9.757 -10.746 16.069
hybrid contribution -1.013 0.719 -0.582 1.372
sum -7.909 -9.038 -11.328 16.509
Atomic orbital electron populations
1.21658 0.94297 1.02153 1.02266 1.21861 0.96776 0.95699 1.03213
1.21944 0.74605 0.98843 1.05454 1.46393 1.08722 1.60273 1.04051
1.23887 0.86999 1.02524 0.91317 1.20214 1.00227 0.85201 0.85921
1.86635 1.90601 1.24792 1.34346 1.77042 1.16644 1.18631 0.96574
1.55131 1.06623 1.53216 1.00515 1.22894 0.82525 0.89294 0.92209
1.45341 1.43516 1.11264 1.25010 1.21105 0.91292 0.93728 0.93461
1.19677 1.36888 0.89286 0.92606 0.88763 1.25258 0.98669 0.97045
0.97763 1.70093 1.50828 1.06452 1.26266 0.86119 0.79289 0.77827
0.82285 1.20432 1.21596 1.19836 1.24312 0.84761 0.87178 0.93247
1.92965 1.83503 1.76197 0.96990 0.91873 0.92681 0.92175 0.92057
0.90234 0.89220 0.87213 0.89709 0.90973 0.76325 0.87534 0.90027
0.94325 0.92253 0.97264 0.93125
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16
2 C -0.14 -1.50 6.26 -26.73 -0.17 -1.67 16
3 C 0.11 1.56 5.50 -4.04 -0.02 1.54 16
4 N -0.49 -8.75 2.74 -114.60 -0.31 -9.06 16
5 C 0.23 3.87 7.61 -154.19 -1.17 2.70 16
6 C 0.17 1.74 7.14 36.01 0.26 2.00 16
7 O -0.56 -6.47 13.64 -35.23 -0.48 -6.95 16
8 N -0.27 -5.24 12.53 32.97 0.41 -4.82 16
9 N -0.35 -7.73 3.87 -65.18 -0.25 -7.98 16
10 C 0.34 7.36 6.81 -63.75 -0.43 6.92 16
11 N -0.54 -13.62 3.16 -184.85 -0.58 -14.21 16
12 C 0.15 3.63 9.01 59.85 0.54 4.17 16
13 C -0.25 -7.08 9.67 -15.06 -0.15 -7.22 16
14 H 0.09 2.70 7.84 -52.48 -0.41 2.28 16
15 C 0.01 0.39 5.13 -17.43 -0.09 0.30 16
16 N -0.89 -26.23 10.59 55.49 0.59 -25.64 16
17 Si 0.92 22.85 29.57 -169.99 -5.03 17.82 16
18 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16
19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
20 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16
21 C 0.47 10.29 7.86 -86.74 -0.68 9.61 16
22 S -0.62 -15.36 29.61 -107.50 -3.18 -18.54 16
23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16
25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16
28 H 0.09 1.00 7.65 -51.93 -0.40 0.60 16
29 H 0.11 1.73 7.63 -51.93 -0.40 1.33 16
30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
31 H 0.07 0.52 7.71 -51.93 -0.40 0.12 16
32 H 0.39 2.02 9.12 45.56 0.42 2.43 16
33 H 0.11 2.33 7.59 -51.93 -0.39 1.94 16
34 H 0.08 1.54 7.86 -51.93 -0.41 1.13 16
35 H 0.04 1.05 7.41 -51.93 -0.38 0.67 16
36 H 0.06 1.52 7.20 -51.93 -0.37 1.15 16
37 H 0.01 0.19 7.84 -51.93 -0.41 -0.22 16
38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
LS Contribution 336.95 15.07 5.08 5.08
Total: -1.00 -36.65 336.95 -10.14 -46.80
By element:
Atomic # 1 Polarization: 4.85 SS G_CDS: -4.83 Total: 0.02 kcal
Atomic # 6 Polarization: 19.04 SS G_CDS: -1.55 Total: 17.49 kcal
Atomic # 7 Polarization: -61.56 SS G_CDS: -0.15 Total: -61.71 kcal
Atomic # 8 Polarization: -6.47 SS G_CDS: -0.48 Total: -6.95 kcal
Atomic # 14 Polarization: 22.85 SS G_CDS: -5.03 Total: 17.82 kcal
Atomic # 16 Polarization: -15.36 SS G_CDS: -3.18 Total: -18.54 kcal
Total LS contribution 5.08 Total: 5.08 kcal
Total: -36.65 -10.14 -46.80 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000769836297.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.529 kcal
(2) G-P(sol) polarization free energy of solvation -36.655 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.874 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.797 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.732 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds