Wall clock time and date at job start Tue Mar 31 2020 02:34:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52997 * 109.47069 * 2 1
4 4 N 1.46501 * 109.46649 * 180.02562 * 3 2 1
5 5 C 1.37313 * 125.82835 * 90.00690 * 4 3 2
6 6 C 1.50702 * 125.58074 * 359.97438 * 5 4 3
7 7 O 1.42893 * 109.47337 * 90.00126 * 6 5 4
8 8 N 1.29414 * 108.83659 * 179.97438 * 5 4 3
9 9 N 1.40177 * 108.13250 * 359.97438 * 8 5 4
10 10 C 1.46503 * 126.34922 * 179.97438 * 9 8 5
11 11 N 1.46499 * 109.46811 * 90.02949 * 10 9 8
12 12 C 1.46504 * 119.99977 * 269.99267 * 11 10 9
13 13 C 1.36932 * 120.00378 * 89.99666 * 11 10 9
14 14 H 1.08005 * 120.00051 * 22.51665 * 13 11 10
15 15 C 1.38818 * 120.00446 * 202.51357 * 13 11 10
16 16 N 1.31617 * 119.99681 * 11.19902 * 15 13 11
17 17 Si 1.86803 * 120.00160 * 191.20455 * 15 13 11
18 18 H 1.48498 * 109.47041 * 59.99832 * 17 15 13
19 19 H 1.48500 * 109.46658 * 179.97438 * 17 15 13
20 20 H 1.48496 * 109.46940 * 299.99583 * 17 15 13
21 21 C 1.34810 * 125.82944 * 269.69114 * 4 3 2
22 22 S 1.71198 * 126.30332 * 0.02562 * 21 4 3
23 23 H 1.09003 * 109.46681 * 299.99850 * 1 2 3
24 24 H 1.08997 * 109.46954 * 59.99605 * 1 2 3
25 25 H 1.09000 * 109.46895 * 179.97438 * 1 2 3
26 26 H 1.09003 * 109.46681 * 240.00150 * 2 1 3
27 27 H 1.08997 * 109.46954 * 120.00394 * 2 1 3
28 28 H 1.08997 * 109.47092 * 300.00292 * 3 2 1
29 29 H 1.09003 * 109.46785 * 60.00230 * 3 2 1
30 30 H 1.09004 * 109.46646 * 210.00181 * 6 5 4
31 31 H 1.08997 * 109.47170 * 329.99913 * 6 5 4
32 32 H 0.96704 * 114.00244 * 179.97438 * 7 6 5
33 33 H 1.09004 * 109.46605 * 210.02478 * 10 9 8
34 34 H 1.08999 * 109.47423 * 330.02665 * 10 9 8
35 35 H 1.09001 * 109.46789 * 94.23191 * 12 11 10
36 36 H 1.08998 * 109.47675 * 214.23587 * 12 11 10
37 37 H 1.09007 * 109.46726 * 334.23648 * 12 11 10
38 38 H 0.96996 * 119.99995 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4424 -0.0006
5 6 4.3083 1.4426 -1.1143
6 6 3.8273 1.4425 -2.5424
7 8 3.6749 2.7896 -2.9939
8 7 5.5462 1.4430 -0.7366
9 7 5.5747 1.4436 0.6649
10 6 6.7720 1.4436 1.5091
11 7 7.1711 2.8248 1.7904
12 6 8.1018 3.5154 0.8942
13 6 6.6742 3.4704 2.8910
14 1 6.3015 2.9002 3.7291
15 6 6.6497 4.8578 2.9297
16 7 6.8930 5.5510 1.8377
17 14 6.2713 5.7410 4.5317
18 1 7.2851 5.3716 5.5520
19 1 6.3068 7.2087 4.3081
20 1 4.9219 5.3449 5.0085
21 6 4.2946 1.4480 1.0920
22 16 3.7701 1.4560 2.7216
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5139 -0.8899
25 1 -0.3633 -1.0277 -0.0005
26 1 1.8933 -0.5138 -0.8900
27 1 1.8934 -0.5139 0.8899
28 1 1.6767 1.9563 -0.8899
29 1 1.6767 1.9562 0.8900
30 1 4.5550 0.9288 -3.1708
31 1 2.8681 0.9284 -2.6027
32 1 3.3675 2.8659 -3.9076
33 1 6.5560 0.9298 2.4458
34 1 7.5818 0.9297 0.9911
35 1 7.5389 4.0901 0.1587
36 1 8.7337 4.1877 1.4744
37 1 8.7252 2.7820 0.3825
38 1 6.8762 6.5204 1.8647
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000769836297.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:34:38
Heat of formation + Delta-G solvation = 39.103758 kcal
Electronic energy + Delta-G solvation = -21432.477487 eV
Core-core repulsion = 18245.262420 eV
Total energy + Delta-G solvation = -3187.215067 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 286.120 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-43.57469 -38.39572 -37.74262 -36.88968 -34.45606 -33.34118 -32.85948 -29.35792
-28.16616 -27.95714 -26.68287 -24.61472 -23.05974 -22.91280 -21.88568 -19.25147
-18.84183 -18.70997 -17.73235 -17.35097 -17.03807 -16.63338 -15.96009 -15.81051
-15.63438 -15.43891 -15.23212 -14.34544 -14.14420 -13.64626 -13.33856 -13.29585
-13.12678 -12.94121 -12.79007 -12.69712 -12.52981 -12.44240 -12.25845 -12.18355
-12.04285 -11.81056 -11.61397 -11.19830 -11.15261 -10.83274 -9.34347 -8.74330
-8.56432 -8.02778 -5.52649 0.17696 0.54377 0.64009 1.36982 1.39973
1.48869 1.50597 1.65211 2.40668 3.04458 3.24697 3.30762 3.39811
3.65561 3.75744 3.87263 4.07684 4.16313 4.27021 4.29119 4.39009
4.49429 4.58188 4.66864 4.73208 4.84759 5.08852 5.11274 5.22056
5.33761 5.39024 5.51727 5.61940 5.64567 6.09555 6.32505 6.84483
6.93648 7.52740 7.92785 8.98549
Molecular weight = 286.12amu
Principal moments of inertia in cm(-1)
A = 0.016805 B = 0.006223 C = 0.005406
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1665.796150 B = 4498.157588 C = 5177.779775
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.126 4.126
3 C 0.106 3.894
4 N -0.483 5.483
5 C 0.251 3.749
6 C 0.165 3.835
7 O -0.588 6.588
8 N -0.289 5.289
9 N -0.365 5.365
10 C 0.351 3.649
11 N -0.565 5.565
12 C 0.170 3.830
13 C -0.254 4.254
14 H 0.078 0.922
15 C -0.036 4.036
16 N -0.928 5.928
17 Si 0.967 3.033
18 H -0.266 1.266
19 H -0.287 1.287
20 H -0.289 1.289
21 C 0.464 3.536
22 S -0.687 6.687
23 H 0.049 0.951
24 H 0.079 0.921
25 H 0.073 0.927
26 H 0.087 0.913
27 H 0.047 0.953
28 H 0.128 0.872
29 H 0.083 0.917
30 H 0.114 0.886
31 H 0.120 0.880
32 H 0.417 0.583
33 H 0.100 0.900
34 H 0.117 0.883
35 H 0.002 0.998
36 H 0.037 0.963
37 H 0.044 0.956
38 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.475 -11.829 -15.134 21.418
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.165 4.165
3 C -0.014 4.014
4 N -0.183 5.183
5 C -0.029 4.029
6 C 0.085 3.915
7 O -0.398 6.398
8 N -0.112 5.112
9 N -0.163 5.163
10 C 0.145 3.855
11 N -0.282 5.282
12 C 0.026 3.974
13 C -0.385 4.385
14 H 0.095 0.905
15 C -0.233 4.233
16 N -0.573 5.573
17 Si 0.795 3.205
18 H -0.191 1.191
19 H -0.213 1.213
20 H -0.215 1.215
21 C 0.098 3.902
22 S -0.561 6.561
23 H 0.068 0.932
24 H 0.098 0.902
25 H 0.092 0.908
26 H 0.106 0.894
27 H 0.066 0.934
28 H 0.146 0.854
29 H 0.102 0.898
30 H 0.132 0.868
31 H 0.138 0.862
32 H 0.271 0.729
33 H 0.118 0.882
34 H 0.134 0.866
35 H 0.021 0.979
36 H 0.056 0.944
37 H 0.063 0.937
38 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges -8.361 -11.447 -13.870 19.832
hybrid contribution -0.750 0.966 0.080 1.225
sum -9.111 -10.481 -13.790 19.571
Atomic orbital electron populations
1.21643 0.92112 1.03253 1.02855 1.21805 0.98467 0.93283 1.02919
1.22377 0.71845 1.01146 1.06049 1.46609 1.10281 1.58226 1.03174
1.25332 0.85760 0.98249 0.93529 1.20664 1.03317 0.85675 0.81837
1.86543 1.91127 1.25138 1.37016 1.77057 1.18764 1.21664 0.93709
1.53695 1.06678 1.53551 1.02415 1.22545 0.82619 0.87868 0.92459
1.45214 1.45506 1.11878 1.25577 1.20773 0.90630 0.93855 0.92119
1.19565 1.36145 0.89366 0.93403 0.90452 1.25822 0.99688 0.97706
1.00055 1.70225 1.53694 1.05930 1.27423 0.85345 0.78308 0.76972
0.79920 1.19114 1.21270 1.21504 1.23710 0.85305 0.87810 0.93362
1.93040 1.84131 1.78928 1.00013 0.93213 0.90210 0.90845 0.89405
0.93429 0.85386 0.89807 0.86819 0.86238 0.72904 0.88240 0.86561
0.97949 0.94407 0.93730 0.93846
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.92 9.91 71.98 0.71 -1.20 16
2 C -0.13 -2.38 6.26 30.60 0.19 -2.19 16
3 C 0.11 2.63 5.50 86.38 0.47 3.11 16
4 N -0.48 -16.16 2.74 -516.47 -1.41 -17.57 16
5 C 0.25 7.49 7.61 137.70 1.05 8.54 16
6 C 0.17 2.55 7.14 71.24 0.51 3.06 16
7 O -0.59 -10.79 13.64 -148.98 -2.03 -12.82 16
8 N -0.29 -10.74 12.53 -49.61 -0.62 -11.36 16
9 N -0.36 -15.72 3.87 -360.12 -1.39 -17.11 16
10 C 0.35 15.25 6.81 170.96 1.16 16.41 16
11 N -0.56 -29.08 3.16 -738.74 -2.34 -31.42 16
12 C 0.17 8.45 9.01 127.77 1.15 9.60 16
13 C -0.25 -14.64 9.67 84.04 0.81 -13.83 16
14 H 0.08 4.62 7.84 -2.91 -0.02 4.60 16
15 C -0.04 -2.11 5.13 84.86 0.44 -1.68 16
16 N -0.93 -56.39 10.59 21.65 0.23 -56.16 16
17 Si 0.97 48.68 29.57 68.60 2.03 50.71 16
18 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16
19 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16
20 H -0.29 -15.07 7.11 99.48 0.71 -14.37 16
21 C 0.46 20.37 7.86 178.99 1.41 21.78 16
22 S -0.69 -34.86 29.61 -56.49 -1.67 -36.53 16
23 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16
24 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16
25 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16
26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16
27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16
28 H 0.13 2.23 7.65 -2.39 -0.02 2.22 16
29 H 0.08 2.59 7.63 -2.39 -0.02 2.58 16
30 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16
31 H 0.12 0.80 7.71 -2.39 -0.02 0.78 16
32 H 0.42 2.16 9.12 -74.05 -0.68 1.48 16
33 H 0.10 4.43 7.59 -2.39 -0.02 4.41 16
34 H 0.12 4.19 7.86 -2.39 -0.02 4.17 16
35 H 0.00 0.11 7.41 -2.39 -0.02 0.10 16
36 H 0.04 1.99 7.20 -2.39 -0.02 1.97 16
37 H 0.04 1.83 7.84 -2.38 -0.02 1.81 16
38 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16
Total: -1.00 -85.26 336.95 1.08 -84.17
By element:
Atomic # 1 Polarization: 4.09 SS G_CDS: 0.39 Total: 4.48 kcal
Atomic # 6 Polarization: 35.71 SS G_CDS: 7.91 Total: 43.61 kcal
Atomic # 7 Polarization: -128.09 SS G_CDS: -5.54 Total: -133.63 kcal
Atomic # 8 Polarization: -10.79 SS G_CDS: -2.03 Total: -12.82 kcal
Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal
Atomic # 16 Polarization: -34.86 SS G_CDS: -1.67 Total: -36.53 kcal
Total: -85.26 1.08 -84.17 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000769836297.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.278 kcal
(2) G-P(sol) polarization free energy of solvation -85.259 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.019 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.174 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.104 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds