Wall clock time and date at job start Tue Mar 31 2020 04:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99822 * 2 1 4 4 C 1.52994 * 109.46838 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.54189 * 54.89540 * 4 3 2 6 6 C 1.53100 * 109.50615 * 175.00306 * 4 3 2 7 7 N 1.47016 * 109.26078 * 176.78761 * 6 4 3 8 8 C 1.46893 * 111.00171 * 177.60900 * 7 6 4 9 9 C 1.50706 * 109.46804 * 293.63378 * 8 7 6 10 10 O 1.21276 * 120.00252 * 353.81102 * 9 8 7 11 11 N 1.34783 * 119.99748 * 173.80548 * 9 8 7 12 12 C 1.46497 * 120.00065 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.47558 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99589 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00367 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99961 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99642 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.46800 * 90.00308 * 17 15 13 19 19 H 1.48507 * 109.46757 * 209.99869 * 17 15 13 20 20 H 1.48496 * 109.47551 * 329.99898 * 17 15 13 21 21 C 1.47020 * 110.74928 * 301.38326 * 7 6 4 22 22 C 1.53095 * 109.25593 * 58.61536 * 21 7 6 23 23 H 1.09003 * 109.50121 * 183.17218 * 22 21 7 24 24 C 1.52995 * 109.51121 * 63.08897 * 22 21 7 25 25 O 1.43010 * 109.51145 * 294.78349 * 4 3 2 26 26 H 1.09002 * 109.47226 * 59.99757 * 1 2 3 27 27 H 1.08994 * 109.46954 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47154 * 300.00434 * 1 2 3 29 29 H 1.09004 * 109.46942 * 59.99994 * 3 2 1 30 30 H 1.09004 * 109.47380 * 300.00017 * 3 2 1 31 31 H 1.08999 * 109.50504 * 296.71757 * 6 4 3 32 32 H 1.09000 * 109.50985 * 56.84809 * 6 4 3 33 33 H 1.09003 * 109.47594 * 53.63558 * 8 7 6 34 34 H 1.08999 * 109.47471 * 173.63976 * 8 7 6 35 35 H 0.96998 * 120.00240 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47166 * 300.00679 * 12 11 9 37 37 H 1.09004 * 109.46593 * 60.00333 * 12 11 9 38 38 H 0.97001 * 119.99810 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.50497 * 178.54939 * 21 7 6 40 40 H 1.08998 * 109.50515 * 298.68118 * 21 7 6 41 41 H 1.09001 * 109.47217 * 59.98996 * 24 22 21 42 42 H 1.08996 * 109.47626 * 179.97438 * 24 22 21 43 43 H 1.09007 * 109.46743 * 299.99723 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8526 0.5669 -0.8395 6 6 4.1586 2.5774 -0.1251 7 7 5.6222 2.4627 -0.0465 8 6 6.2630 3.7731 -0.2199 9 6 6.0238 4.2674 -1.6233 10 8 5.4809 3.5485 -2.4352 11 7 6.4131 5.5086 -1.9761 12 6 6.1810 5.9890 -3.3405 13 6 6.7047 7.3958 -3.4737 14 1 7.1648 7.8831 -2.6268 15 6 6.5965 8.0607 -4.6767 16 7 7.0539 9.2882 -4.7930 17 14 5.8001 7.2180 -6.1412 18 1 4.3414 7.4966 -6.1396 19 1 6.4014 7.7348 -7.3969 20 1 6.0243 5.7528 -6.0515 21 6 6.0286 1.8413 1.2225 22 6 5.3866 0.4560 1.3346 23 1 5.6395 0.0147 2.2987 24 6 5.9073 -0.4410 0.2099 25 8 3.9664 0.5839 1.2248 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8465 -0.8900 31 1 3.8789 3.0162 -1.0828 32 1 3.7992 3.2116 0.6854 33 1 5.8398 4.4817 0.4921 34 1 7.3349 3.6793 -0.0456 35 1 6.8476 6.0836 -1.3269 36 1 6.6982 5.3399 -4.0471 37 1 5.1119 5.9781 -3.5525 38 1 6.9774 9.7561 -5.6392 39 1 7.1138 1.7428 1.2483 40 1 5.6990 2.4636 2.0544 41 1 6.9901 -0.5349 0.2918 42 1 5.4503 -1.4273 0.2905 43 1 5.6528 0.0000 -0.7539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784373071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:53 Heat of formation + Delta-G solvation = -117.182480 kcal Electronic energy + Delta-G solvation = -23455.679372 eV Core-core repulsion = 19922.474697 eV Total energy + Delta-G solvation = -3533.204675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.30520 -38.82120 -37.76286 -35.54039 -34.25232 -32.95324 -32.39073 -30.42469 -28.76661 -27.40077 -27.00107 -25.62293 -23.67118 -22.62377 -21.75342 -19.88490 -19.57838 -17.40149 -16.85187 -16.70941 -16.65054 -16.09242 -15.45244 -15.31429 -15.30172 -15.00941 -14.56297 -14.47879 -14.05696 -13.78735 -13.60583 -13.00178 -12.73425 -12.53549 -12.47412 -12.31337 -12.03183 -11.92606 -11.73097 -11.47510 -11.27468 -11.17098 -11.03589 -10.78117 -10.40770 -9.99654 -9.86335 -9.73984 -9.52514 -9.15513 -8.80571 -8.39205 -8.15945 -6.24362 -4.26835 3.18569 3.24753 3.28669 3.32552 3.39897 3.54813 3.70497 4.19608 4.30981 4.68909 4.83278 4.84156 4.95972 5.00453 5.07039 5.10928 5.14104 5.22874 5.26590 5.27909 5.33908 5.36513 5.42925 5.45538 5.48047 5.50867 5.69502 5.86740 5.89279 5.94838 6.31375 6.69542 6.81236 6.87724 6.96156 7.04206 7.15456 7.20151 7.36281 8.11135 8.48364 8.72486 8.91273 9.35770 10.87603 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.019949 B = 0.003609 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.228236 B = 7755.566201 C = 8658.302424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.071 3.929 4 C 0.097 3.903 5 H 0.081 0.919 6 C 0.024 3.976 7 N -0.512 5.512 8 C 0.036 3.964 9 C 0.500 3.500 10 O -0.540 6.540 11 N -0.707 5.707 12 C 0.222 3.778 13 C -0.544 4.544 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.892 5.892 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.260 1.260 21 C 0.022 3.978 22 C 0.092 3.908 23 H 0.104 0.896 24 C -0.177 4.177 25 O -0.371 6.371 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.396 0.604 36 H 0.025 0.975 37 H 0.019 0.981 38 H 0.268 0.732 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.677 -16.418 13.881 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.007 4.007 4 C 0.039 3.961 5 H 0.099 0.901 6 C -0.104 4.104 7 N -0.237 5.237 8 C -0.095 4.095 9 C 0.284 3.716 10 O -0.418 6.418 11 N -0.357 5.357 12 C 0.100 3.900 13 C -0.582 4.582 14 H 0.097 0.903 15 C -0.126 4.126 16 N -0.530 5.530 17 Si 0.703 3.297 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.185 1.185 21 C -0.106 4.106 22 C 0.034 3.966 23 H 0.122 0.878 24 C -0.234 4.234 25 O -0.290 6.290 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.229 0.771 36 H 0.043 0.957 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.900 -17.287 12.897 22.645 hybrid contribution -0.342 1.039 -0.013 1.094 sum -7.242 -16.248 12.884 21.965 Atomic orbital electron populations 1.22741 0.81163 1.02694 0.99944 1.87929 1.19456 1.27323 1.95400 1.22489 0.91820 0.85296 1.01051 1.22058 0.92055 0.93350 0.88680 0.90069 1.22797 0.87579 0.96625 1.03377 1.61765 1.07189 1.21594 1.33140 1.22030 1.01360 0.90454 0.95669 1.20334 0.79677 0.82227 0.89370 1.90634 1.42959 1.55743 1.52485 1.46189 1.59807 1.14149 1.15542 1.19468 0.96371 0.95238 0.78906 1.21092 1.41055 0.96757 0.99313 0.90285 1.24801 0.94613 0.94629 0.98596 1.69879 1.45593 1.11213 1.26279 0.86812 0.79973 0.80850 0.82024 1.19878 1.20873 1.18470 1.22863 1.01258 0.96187 0.90335 1.22226 0.80856 0.93799 0.99717 0.87817 1.22291 1.01199 0.99485 1.00439 1.88055 1.21294 1.81495 1.38206 0.94051 0.89658 0.94140 0.92612 0.91428 0.87652 0.94325 0.92166 0.87783 0.77097 0.95686 0.96270 0.92236 0.89422 0.93953 0.91841 0.92394 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.80 10.67 -39.73 -0.42 -5.23 16 3 C 0.07 0.83 5.60 37.15 0.21 1.04 16 4 C 0.10 1.26 2.69 -26.68 -0.07 1.19 16 5 H 0.08 1.17 6.49 -51.93 -0.34 0.83 16 6 C 0.02 0.33 4.58 -3.71 -0.02 0.31 16 7 N -0.51 -6.82 3.79 -235.75 -0.89 -7.72 16 8 C 0.04 0.48 5.45 -4.98 -0.03 0.45 16 9 C 0.50 9.10 7.40 -10.98 -0.08 9.02 16 10 O -0.54 -11.78 14.67 5.56 0.08 -11.70 16 11 N -0.71 -13.82 5.55 -61.47 -0.34 -14.16 16 12 C 0.22 5.37 4.50 -5.20 -0.02 5.34 16 13 C -0.54 -14.73 9.83 -34.44 -0.34 -15.07 16 14 H 0.08 2.22 7.84 -52.48 -0.41 1.81 16 15 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 16 N -0.89 -26.31 13.96 55.43 0.77 -25.53 16 17 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 21 C 0.02 0.23 5.06 -3.71 -0.02 0.21 16 22 C 0.09 0.99 3.92 -26.68 -0.10 0.88 16 23 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 24 C -0.18 -1.91 8.89 37.16 0.33 -1.58 16 25 O -0.37 -4.89 10.25 -39.73 -0.41 -5.29 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.11 1.66 6.10 -51.93 -0.32 1.35 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 34 H 0.10 1.16 8.04 -51.93 -0.42 0.75 16 35 H 0.40 6.75 8.32 -40.82 -0.34 6.41 16 36 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 37 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.08 1.00 6.12 -51.93 -0.32 0.68 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -32.75 345.13 -6.95 -39.70 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.14 Total: 2.87 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 0.87 Total: 5.26 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.46 Total: -47.41 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.75 Total: -22.22 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.75 -6.95 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784373071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.482 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds