Wall clock time and date at job start Tue Mar 31 2020 04:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99822 * 2 1 4 4 C 1.52994 * 109.46838 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.54189 * 54.89540 * 4 3 2 6 6 C 1.53100 * 109.50615 * 175.00306 * 4 3 2 7 7 N 1.47016 * 109.26078 * 176.78761 * 6 4 3 8 8 C 1.46893 * 111.00171 * 177.60900 * 7 6 4 9 9 C 1.50706 * 109.46804 * 293.63378 * 8 7 6 10 10 O 1.21276 * 120.00252 * 353.81102 * 9 8 7 11 11 N 1.34783 * 119.99748 * 173.80548 * 9 8 7 12 12 C 1.46497 * 120.00065 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.47558 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99589 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00367 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99961 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99642 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.46800 * 90.00308 * 17 15 13 19 19 H 1.48507 * 109.46757 * 209.99869 * 17 15 13 20 20 H 1.48496 * 109.47551 * 329.99898 * 17 15 13 21 21 C 1.47020 * 110.74928 * 301.38326 * 7 6 4 22 22 C 1.53095 * 109.25593 * 58.61536 * 21 7 6 23 23 H 1.09003 * 109.50121 * 183.17218 * 22 21 7 24 24 C 1.52995 * 109.51121 * 63.08897 * 22 21 7 25 25 O 1.43010 * 109.51145 * 294.78349 * 4 3 2 26 26 H 1.09002 * 109.47226 * 59.99757 * 1 2 3 27 27 H 1.08994 * 109.46954 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47154 * 300.00434 * 1 2 3 29 29 H 1.09004 * 109.46942 * 59.99994 * 3 2 1 30 30 H 1.09004 * 109.47380 * 300.00017 * 3 2 1 31 31 H 1.08999 * 109.50504 * 296.71757 * 6 4 3 32 32 H 1.09000 * 109.50985 * 56.84809 * 6 4 3 33 33 H 1.09003 * 109.47594 * 53.63558 * 8 7 6 34 34 H 1.08999 * 109.47471 * 173.63976 * 8 7 6 35 35 H 0.96998 * 120.00240 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47166 * 300.00679 * 12 11 9 37 37 H 1.09004 * 109.46593 * 60.00333 * 12 11 9 38 38 H 0.97001 * 119.99810 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.50497 * 178.54939 * 21 7 6 40 40 H 1.08998 * 109.50515 * 298.68118 * 21 7 6 41 41 H 1.09001 * 109.47217 * 59.98996 * 24 22 21 42 42 H 1.08996 * 109.47626 * 179.97438 * 24 22 21 43 43 H 1.09007 * 109.46743 * 299.99723 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8526 0.5669 -0.8395 6 6 4.1586 2.5774 -0.1251 7 7 5.6222 2.4627 -0.0465 8 6 6.2630 3.7731 -0.2199 9 6 6.0238 4.2674 -1.6233 10 8 5.4809 3.5485 -2.4352 11 7 6.4131 5.5086 -1.9761 12 6 6.1810 5.9890 -3.3405 13 6 6.7047 7.3958 -3.4737 14 1 7.1648 7.8831 -2.6268 15 6 6.5965 8.0607 -4.6767 16 7 7.0539 9.2882 -4.7930 17 14 5.8001 7.2180 -6.1412 18 1 4.3414 7.4966 -6.1396 19 1 6.4014 7.7348 -7.3969 20 1 6.0243 5.7528 -6.0515 21 6 6.0286 1.8413 1.2225 22 6 5.3866 0.4560 1.3346 23 1 5.6395 0.0147 2.2987 24 6 5.9073 -0.4410 0.2099 25 8 3.9664 0.5839 1.2248 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8465 -0.8900 31 1 3.8789 3.0162 -1.0828 32 1 3.7992 3.2116 0.6854 33 1 5.8398 4.4817 0.4921 34 1 7.3349 3.6793 -0.0456 35 1 6.8476 6.0836 -1.3269 36 1 6.6982 5.3399 -4.0471 37 1 5.1119 5.9781 -3.5525 38 1 6.9774 9.7561 -5.6392 39 1 7.1138 1.7428 1.2483 40 1 5.6990 2.4636 2.0544 41 1 6.9901 -0.5349 0.2918 42 1 5.4503 -1.4273 0.2905 43 1 5.6528 0.0000 -0.7539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784373071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:52 Heat of formation + Delta-G solvation = -143.283510 kcal Electronic energy + Delta-G solvation = -23456.811197 eV Core-core repulsion = 19922.474697 eV Total energy + Delta-G solvation = -3534.336500 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34899 -40.20150 -38.64629 -36.67237 -35.97463 -34.40378 -33.84686 -31.49880 -30.30014 -28.46408 -28.09812 -26.49301 -24.89258 -23.79641 -23.27024 -21.43022 -20.50563 -19.16515 -17.93706 -17.77069 -17.59359 -17.50123 -16.85630 -16.54892 -16.28538 -16.05118 -15.95591 -15.66286 -15.27738 -15.03001 -14.76094 -14.52759 -14.31139 -13.99377 -13.69493 -13.29715 -13.06857 -13.02427 -12.80591 -12.74864 -12.58402 -12.43191 -12.14899 -12.06663 -11.94012 -11.65768 -11.33972 -10.92352 -10.88872 -10.68208 -10.47895 -9.89661 -9.34887 -8.40574 -6.47310 1.31846 1.34672 1.46989 1.75890 2.21396 2.27734 2.60381 2.70186 2.95077 3.10098 3.84024 3.85121 3.91069 3.98847 4.05580 4.17100 4.24369 4.32866 4.38564 4.42909 4.47022 4.50796 4.54931 4.56691 4.69052 4.77983 4.79721 4.83340 4.88680 4.98829 5.03836 5.09796 5.26595 5.42365 5.54308 5.76615 5.94199 6.10286 6.13560 6.25278 6.54229 6.88434 7.16153 7.45474 8.74189 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.019949 B = 0.003609 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.228236 B = 7755.566201 C = 8658.302424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.071 3.929 4 C 0.102 3.898 5 H 0.059 0.941 6 C 0.031 3.969 7 N -0.531 5.531 8 C 0.048 3.952 9 C 0.498 3.502 10 O -0.578 6.578 11 N -0.708 5.708 12 C 0.235 3.765 13 C -0.546 4.546 14 H 0.060 0.940 15 C 0.026 3.974 16 N -0.932 5.932 17 Si 0.937 3.063 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.261 1.261 21 C 0.025 3.975 22 C 0.085 3.915 23 H 0.130 0.870 24 C -0.171 4.171 25 O -0.383 6.383 26 H 0.048 0.952 27 H 0.098 0.902 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.409 0.591 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.272 0.728 39 H 0.109 0.891 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.056 0.944 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 -17.447 15.347 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.006 4.006 4 C 0.044 3.956 5 H 0.077 0.923 6 C -0.098 4.098 7 N -0.256 5.256 8 C -0.083 4.083 9 C 0.285 3.715 10 O -0.458 6.458 11 N -0.358 5.358 12 C 0.111 3.889 13 C -0.583 4.583 14 H 0.078 0.922 15 C -0.174 4.174 16 N -0.571 5.571 17 Si 0.761 3.239 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.186 1.186 21 C -0.102 4.102 22 C 0.028 3.972 23 H 0.148 0.852 24 C -0.229 4.229 25 O -0.303 6.303 26 H 0.067 0.933 27 H 0.117 0.883 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.151 0.849 35 H 0.244 0.756 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.982 -18.323 14.403 24.330 hybrid contribution -0.298 1.319 -0.403 1.411 sum -7.280 -17.004 14.001 23.198 Atomic orbital electron populations 1.22946 0.79355 1.03945 1.00860 1.87885 1.21536 1.27755 1.95584 1.22494 0.91097 0.85316 1.01668 1.21927 0.92901 0.92671 0.88127 0.92302 1.22642 0.88202 0.96809 1.02131 1.61715 1.06895 1.21749 1.35282 1.21987 1.03248 0.90975 0.92055 1.21240 0.78031 0.81000 0.91204 1.90624 1.44391 1.56580 1.54255 1.46030 1.60492 1.15226 1.14091 1.19038 0.95219 0.93333 0.81349 1.21307 1.40352 0.97943 0.98742 0.92189 1.25595 0.95228 0.95173 1.01418 1.69980 1.47128 1.12639 1.27309 0.85866 0.79431 0.79598 0.79037 1.18997 1.19889 1.18572 1.22944 1.02510 0.95680 0.89111 1.22502 0.79731 0.94211 1.00760 0.85205 1.22230 1.02267 0.99228 0.99128 1.88041 1.22874 1.81489 1.37870 0.93306 0.88331 0.93017 0.91601 0.91110 0.90467 0.93271 0.89643 0.84932 0.75594 0.97182 0.97224 0.91865 0.87252 0.92771 0.90169 0.92542 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -10.06 10.67 -144.68 -1.54 -11.61 16 3 C 0.07 1.64 5.60 71.98 0.40 2.05 16 4 C 0.10 2.64 2.69 30.63 0.08 2.72 16 5 H 0.06 1.76 6.49 -2.39 -0.02 1.75 16 6 C 0.03 0.80 4.58 86.31 0.40 1.20 16 7 N -0.53 -13.11 3.79 -899.77 -3.41 -16.52 16 8 C 0.05 1.13 5.45 85.56 0.47 1.60 16 9 C 0.50 17.64 7.40 87.66 0.65 18.29 16 10 O -0.58 -25.29 14.67 -3.02 -0.04 -25.33 16 11 N -0.71 -27.10 5.55 -466.79 -2.59 -29.69 16 12 C 0.23 11.32 4.50 85.63 0.38 11.70 16 13 C -0.55 -29.74 9.83 25.60 0.25 -29.49 16 14 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 15 C 0.03 1.47 5.47 84.65 0.46 1.93 16 16 N -0.93 -55.34 13.96 21.45 0.30 -55.04 16 17 Si 0.94 43.91 27.47 68.60 1.88 45.80 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.26 -12.20 6.54 99.48 0.65 -11.55 16 21 C 0.02 0.44 5.06 86.31 0.44 0.88 16 22 C 0.09 1.63 3.92 30.62 0.12 1.75 16 23 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 24 C -0.17 -3.47 8.89 71.98 0.64 -2.83 16 25 O -0.38 -9.54 10.25 -144.68 -1.48 -11.02 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.08 2.47 6.10 -2.39 -0.01 2.46 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.65 8.12 -2.39 -0.02 1.64 16 34 H 0.13 2.44 8.04 -2.39 -0.02 2.42 16 35 H 0.41 13.45 8.32 -92.71 -0.77 12.68 16 36 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 37 H 0.01 0.49 7.57 -2.38 -0.02 0.48 16 38 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.11 1.49 8.09 -2.39 -0.02 1.47 16 40 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.05 1.25 6.12 -2.38 -0.01 1.24 16 Total: -1.00 -71.21 345.13 -1.18 -72.39 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.17 Total: 19.58 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 5.54 Total: 11.45 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -5.70 Total: -101.25 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -3.07 Total: -47.96 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.80 kcal Total: -71.21 -1.18 -72.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784373071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.893 kcal (2) G-P(sol) polarization free energy of solvation -71.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds