Wall clock time and date at job start Tue Mar 31 2020 04:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47349 * 2 1 4 4 O 1.42907 * 109.47068 * 240.00650 * 2 1 3 5 5 C 1.42898 * 113.99723 * 209.99949 * 4 2 1 6 6 C 1.53001 * 109.47104 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.51046 * 54.90342 * 6 5 4 8 8 C 1.53303 * 109.51235 * 175.00071 * 6 5 4 9 9 N 1.47154 * 108.38163 * 172.22837 * 8 6 5 10 10 C 1.34771 * 120.98053 * 129.44724 * 9 8 6 11 11 O 1.21586 * 120.00486 * 354.77421 * 10 9 8 12 12 N 1.34784 * 120.00092 * 174.78183 * 10 9 8 13 13 C 1.46495 * 120.00147 * 184.97013 * 12 10 9 14 14 C 1.50697 * 109.47316 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99434 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00271 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99925 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99918 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47741 * 59.99787 * 18 16 14 20 20 H 1.48504 * 109.47090 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47334 * 299.99325 * 18 16 14 22 22 C 1.47153 * 118.03567 * 309.46140 * 9 8 6 23 23 C 1.53300 * 108.38510 * 50.53939 * 22 9 8 24 24 O 1.42960 * 109.51217 * 294.74875 * 6 5 4 25 25 H 1.09002 * 109.46772 * 59.99889 * 1 2 3 26 26 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46815 * 299.99657 * 1 2 3 28 28 H 1.08997 * 109.47421 * 120.00386 * 2 1 3 29 29 H 1.09002 * 109.47606 * 300.00702 * 3 2 1 30 30 H 1.09009 * 109.46917 * 60.00033 * 3 2 1 31 31 H 1.08995 * 109.47562 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47425 * 299.99667 * 5 4 2 33 33 H 1.09006 * 109.47461 * 59.99806 * 5 4 2 34 34 H 1.08997 * 109.67762 * 291.94918 * 8 6 5 35 35 H 1.08994 * 109.68235 * 52.46478 * 8 6 5 36 36 H 0.97000 * 119.99648 * 4.97266 * 12 10 9 37 37 H 1.08998 * 109.47325 * 300.00478 * 13 12 10 38 38 H 1.09005 * 109.47123 * 59.99746 * 13 12 10 39 39 H 0.96996 * 120.00365 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.68342 * 170.26144 * 22 9 8 41 41 H 1.09001 * 109.68129 * 290.78200 * 22 9 8 42 42 H 1.08997 * 109.51169 * 67.61629 * 23 22 9 43 43 H 1.08994 * 109.51389 * 187.77651 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6735 -1.1669 5 6 3.2660 -1.3244 -0.9888 6 6 3.6755 -2.0089 -2.2944 7 1 3.6728 -1.2794 -3.1043 8 6 5.0816 -2.6008 -2.1431 9 7 5.3755 -3.4095 -3.3368 10 6 6.5204 -3.2373 -4.0268 11 8 7.2842 -2.3413 -3.7233 12 7 6.8185 -4.0581 -5.0534 13 6 8.1108 -3.9411 -5.7334 14 6 8.1935 -4.9660 -6.8350 15 1 7.3659 -5.6372 -7.0112 16 6 9.3255 -5.0469 -7.6179 17 7 10.3330 -4.2293 -7.4036 18 14 9.4276 -6.3170 -8.9838 19 1 8.3327 -6.0839 -9.9595 20 1 10.7377 -6.1984 -9.6731 21 1 9.2937 -7.6781 -8.4052 22 6 4.3824 -4.4116 -3.7551 23 6 3.0104 -3.7315 -3.8279 24 8 2.7524 -3.0589 -2.5930 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 3.1300 1.4425 0.0005 32 1 4.0201 -0.5873 -0.7126 33 1 3.1810 -2.0707 -0.1988 34 1 5.8112 -1.7958 -2.0562 35 1 5.1214 -3.2298 -1.2539 36 1 6.1774 -4.7264 -5.3420 37 1 8.2088 -2.9420 -6.1580 38 1 8.9149 -4.1119 -5.0175 39 1 11.1293 -4.2859 -7.9545 40 1 4.6491 -4.8057 -4.7357 41 1 4.3521 -5.2238 -3.0288 42 1 3.0051 -3.0090 -4.6439 43 1 2.2403 -4.4831 -4.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787360016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:14 Heat of formation + Delta-G solvation = -120.373765 kcal Electronic energy + Delta-G solvation = -23054.098620 eV Core-core repulsion = 19520.755560 eV Total energy + Delta-G solvation = -3533.343059 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.20943 -38.74960 -37.90299 -34.44261 -34.34072 -33.45336 -32.37009 -31.52625 -28.44584 -27.57086 -27.26592 -25.40967 -23.35268 -22.54054 -21.64265 -21.11170 -19.30179 -18.23114 -17.20923 -16.69262 -16.14442 -15.83101 -15.65211 -15.33629 -15.06761 -14.77060 -14.52837 -14.39725 -13.81638 -13.44570 -13.18140 -13.14534 -12.97670 -12.62205 -12.43105 -12.25626 -11.91778 -11.82606 -11.70280 -11.59127 -11.29168 -10.98234 -10.92063 -10.88754 -10.67953 -10.30415 -10.09063 -9.77803 -9.44661 -9.38618 -8.74836 -8.41533 -7.77284 -6.16323 -4.23316 2.92528 3.25157 3.30068 3.31565 3.39901 3.62292 3.82714 4.29720 4.56125 4.61439 4.73016 4.75738 4.85928 4.91624 4.97966 5.03127 5.13200 5.16556 5.19646 5.29119 5.31248 5.34346 5.49105 5.53022 5.56994 5.60469 5.71799 5.76210 5.89441 5.92864 5.94204 6.58445 6.99089 7.06289 7.09502 7.46673 7.49761 7.54899 7.81238 7.99749 8.71873 8.85299 9.25964 9.44766 10.93868 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.039065 B = 0.002826 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.574781 B = 9903.996501 C =10347.729318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 C -0.177 4.177 4 O -0.374 6.374 5 C 0.074 3.926 6 C 0.080 3.920 7 H 0.072 0.928 8 C 0.107 3.893 9 N -0.641 5.641 10 C 0.699 3.301 11 O -0.596 6.596 12 N -0.727 5.727 13 C 0.266 3.734 14 C -0.543 4.543 15 H 0.061 0.939 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.077 3.923 23 C 0.050 3.950 24 O -0.370 6.370 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.386 0.614 37 H 0.026 0.974 38 H 0.024 0.976 39 H 0.267 0.733 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.970 4.468 13.971 23.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 C -0.234 4.234 4 O -0.293 6.293 5 C -0.003 4.003 6 C 0.021 3.979 7 H 0.090 0.910 8 C -0.017 4.017 9 N -0.381 5.381 10 C 0.401 3.599 11 O -0.475 6.475 12 N -0.381 5.381 13 C 0.145 3.855 14 C -0.581 4.581 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.047 4.047 23 C -0.028 4.028 24 O -0.288 6.288 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.220 0.780 37 H 0.044 0.956 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.378 5.112 14.029 23.679 hybrid contribution 0.222 -0.978 -0.888 1.339 sum -18.156 4.134 13.141 22.791 Atomic orbital electron populations 1.21847 0.93649 1.02768 1.02340 1.22083 0.95081 0.92360 0.88273 1.22323 1.01682 0.96864 1.02561 1.87989 1.36271 1.69783 1.35251 1.22436 0.86401 0.95272 0.96236 1.22474 0.88739 0.89376 0.97316 0.91037 1.21860 0.95849 0.96537 0.87475 1.47262 1.19874 1.40711 1.30299 1.16020 0.80770 0.82756 0.80403 1.90861 1.50459 1.34967 1.71191 1.45874 1.21809 1.36751 1.33672 1.19006 0.77857 0.97487 0.91126 1.21165 1.02365 1.18361 1.16251 0.92052 1.24941 0.95272 0.96179 0.97595 1.69964 1.05819 1.36888 1.39552 0.86464 0.77426 0.81382 0.81553 1.20073 1.21057 1.20072 1.22291 0.88997 0.91729 1.01670 1.22969 0.96342 0.96615 0.86875 1.87971 1.52237 1.49066 1.39572 0.91820 0.91908 0.91430 0.92258 0.91721 0.91740 0.92373 0.91516 0.92233 0.87838 0.91265 0.77965 0.95606 0.95761 0.92373 0.89077 0.90823 0.92535 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.56 37.16 0.36 -0.75 16 2 C 0.08 0.68 3.34 -26.73 -0.09 0.60 16 3 C -0.18 -1.34 9.53 37.16 0.35 -0.98 16 4 O -0.37 -4.33 9.96 -39.71 -0.40 -4.72 16 5 C 0.07 0.77 5.41 37.16 0.20 0.98 16 6 C 0.08 1.01 3.06 -26.57 -0.08 0.92 16 7 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 8 C 0.11 1.48 5.94 -3.53 -0.02 1.46 16 9 N -0.64 -10.40 3.02 -178.00 -0.54 -10.93 16 10 C 0.70 14.89 8.31 -86.92 -0.72 14.17 16 11 O -0.60 -15.03 15.82 5.29 0.08 -14.95 16 12 N -0.73 -15.90 5.46 -66.42 -0.36 -16.26 16 13 C 0.27 7.18 5.43 -5.20 -0.03 7.15 16 14 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 15 H 0.06 1.55 7.60 -52.49 -0.40 1.16 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 18 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 C 0.08 0.97 6.57 -3.53 -0.02 0.94 16 23 C 0.05 0.56 6.99 37.31 0.26 0.82 16 24 O -0.37 -4.81 10.35 -39.71 -0.41 -5.22 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.44 7.79 -51.93 -0.40 0.04 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 32 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 33 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.10 1.56 7.06 -51.93 -0.37 1.19 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.39 7.24 5.88 -40.82 -0.24 7.00 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.09 1.09 5.78 -51.93 -0.30 0.79 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -33.72 351.57 -7.98 -41.69 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.15 Total: 2.82 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -0.21 Total: 11.87 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.16 Total: -52.61 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.72 Total: -24.89 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.72 -7.98 -41.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787360016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.679 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds