Wall clock time and date at job start Tue Mar 31 2020 04:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47349 * 2 1 4 4 O 1.42907 * 109.47068 * 240.00650 * 2 1 3 5 5 C 1.42898 * 113.99723 * 209.99949 * 4 2 1 6 6 C 1.53001 * 109.47104 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.51046 * 54.90342 * 6 5 4 8 8 C 1.53303 * 109.51235 * 175.00071 * 6 5 4 9 9 N 1.47154 * 108.38163 * 172.22837 * 8 6 5 10 10 C 1.34771 * 120.98053 * 129.44724 * 9 8 6 11 11 O 1.21586 * 120.00486 * 354.77421 * 10 9 8 12 12 N 1.34784 * 120.00092 * 174.78183 * 10 9 8 13 13 C 1.46495 * 120.00147 * 184.97013 * 12 10 9 14 14 C 1.50697 * 109.47316 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99434 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00271 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99925 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99918 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47741 * 59.99787 * 18 16 14 20 20 H 1.48504 * 109.47090 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47334 * 299.99325 * 18 16 14 22 22 C 1.47153 * 118.03567 * 309.46140 * 9 8 6 23 23 C 1.53300 * 108.38510 * 50.53939 * 22 9 8 24 24 O 1.42960 * 109.51217 * 294.74875 * 6 5 4 25 25 H 1.09002 * 109.46772 * 59.99889 * 1 2 3 26 26 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46815 * 299.99657 * 1 2 3 28 28 H 1.08997 * 109.47421 * 120.00386 * 2 1 3 29 29 H 1.09002 * 109.47606 * 300.00702 * 3 2 1 30 30 H 1.09009 * 109.46917 * 60.00033 * 3 2 1 31 31 H 1.08995 * 109.47562 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47425 * 299.99667 * 5 4 2 33 33 H 1.09006 * 109.47461 * 59.99806 * 5 4 2 34 34 H 1.08997 * 109.67762 * 291.94918 * 8 6 5 35 35 H 1.08994 * 109.68235 * 52.46478 * 8 6 5 36 36 H 0.97000 * 119.99648 * 4.97266 * 12 10 9 37 37 H 1.08998 * 109.47325 * 300.00478 * 13 12 10 38 38 H 1.09005 * 109.47123 * 59.99746 * 13 12 10 39 39 H 0.96996 * 120.00365 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.68342 * 170.26144 * 22 9 8 41 41 H 1.09001 * 109.68129 * 290.78200 * 22 9 8 42 42 H 1.08997 * 109.51169 * 67.61629 * 23 22 9 43 43 H 1.08994 * 109.51389 * 187.77651 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6735 -1.1669 5 6 3.2660 -1.3244 -0.9888 6 6 3.6755 -2.0089 -2.2944 7 1 3.6728 -1.2794 -3.1043 8 6 5.0816 -2.6008 -2.1431 9 7 5.3755 -3.4095 -3.3368 10 6 6.5204 -3.2373 -4.0268 11 8 7.2842 -2.3413 -3.7233 12 7 6.8185 -4.0581 -5.0534 13 6 8.1108 -3.9411 -5.7334 14 6 8.1935 -4.9660 -6.8350 15 1 7.3659 -5.6372 -7.0112 16 6 9.3255 -5.0469 -7.6179 17 7 10.3330 -4.2293 -7.4036 18 14 9.4276 -6.3170 -8.9838 19 1 8.3327 -6.0839 -9.9595 20 1 10.7377 -6.1984 -9.6731 21 1 9.2937 -7.6781 -8.4052 22 6 4.3824 -4.4116 -3.7551 23 6 3.0104 -3.7315 -3.8279 24 8 2.7524 -3.0589 -2.5930 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 3.1300 1.4425 0.0005 32 1 4.0201 -0.5873 -0.7126 33 1 3.1810 -2.0707 -0.1988 34 1 5.8112 -1.7958 -2.0562 35 1 5.1214 -3.2298 -1.2539 36 1 6.1774 -4.7264 -5.3420 37 1 8.2088 -2.9420 -6.1580 38 1 8.9149 -4.1119 -5.0175 39 1 11.1293 -4.2859 -7.9545 40 1 4.6491 -4.8057 -4.7357 41 1 4.3521 -5.2238 -3.0288 42 1 3.0051 -3.0090 -4.6439 43 1 2.2403 -4.4831 -4.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787360016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:13 Heat of formation + Delta-G solvation = -144.823920 kcal Electronic energy + Delta-G solvation = -23055.158858 eV Core-core repulsion = 19520.755560 eV Total energy + Delta-G solvation = -3534.403298 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.56752 -39.90175 -38.92599 -36.27421 -35.81445 -34.47797 -34.10347 -32.52291 -29.83091 -28.99626 -28.07745 -26.71149 -24.61958 -24.26338 -22.52470 -22.11250 -20.91119 -19.73148 -18.14438 -18.11103 -17.58099 -17.27416 -16.90748 -16.53383 -16.30665 -16.15326 -15.68550 -15.47989 -15.04554 -14.88878 -14.77315 -14.09946 -14.05903 -13.82968 -13.67533 -13.36131 -13.08600 -13.01205 -12.90403 -12.68991 -12.66243 -12.34436 -12.23673 -12.14342 -11.76448 -11.58109 -11.51094 -11.28891 -11.09965 -10.80307 -10.52979 -10.06203 -9.42810 -8.28774 -6.45732 1.42904 1.48088 1.53716 1.58696 2.09821 2.37888 2.56583 2.72781 3.06057 3.08000 3.73092 3.86535 3.88245 3.98277 4.08213 4.13579 4.17578 4.27129 4.33526 4.39626 4.45747 4.57299 4.70465 4.75579 4.77644 4.88067 4.92421 4.95265 4.98400 5.03303 5.24581 5.30839 5.35548 5.36338 5.46279 5.63136 5.82065 6.01107 6.06912 6.32398 6.64805 7.08477 7.24092 7.59999 8.83362 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.039065 B = 0.002826 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.574781 B = 9903.996501 C =10347.729318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.175 4.175 4 O -0.398 6.398 5 C 0.076 3.924 6 C 0.088 3.912 7 H 0.052 0.948 8 C 0.105 3.895 9 N -0.634 5.634 10 C 0.695 3.305 11 O -0.643 6.643 12 N -0.721 5.721 13 C 0.285 3.715 14 C -0.556 4.556 15 H 0.084 0.916 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.987 3.013 19 H -0.262 1.262 20 H -0.286 1.286 21 H -0.261 1.261 22 C 0.072 3.928 23 C 0.051 3.949 24 O -0.376 6.376 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.403 0.597 37 H -0.015 1.015 38 H -0.014 1.014 39 H 0.269 0.731 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.047 0.953 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.131 2.718 14.279 25.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 C -0.232 4.232 4 O -0.318 6.318 5 C -0.001 4.001 6 C 0.028 3.972 7 H 0.070 0.930 8 C -0.018 4.018 9 N -0.372 5.372 10 C 0.397 3.603 11 O -0.526 6.526 12 N -0.377 5.377 13 C 0.162 3.838 14 C -0.594 4.594 15 H 0.102 0.898 16 C -0.196 4.196 17 N -0.569 5.569 18 Si 0.809 3.191 19 H -0.187 1.187 20 H -0.211 1.211 21 H -0.185 1.185 22 C -0.050 4.050 23 C -0.026 4.026 24 O -0.294 6.294 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.241 0.759 37 H 0.003 0.997 38 H 0.004 0.996 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.066 0.934 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.632 3.337 14.372 25.365 hybrid contribution 0.827 -0.380 -0.900 1.280 sum -19.805 2.957 13.472 24.135 Atomic orbital electron populations 1.21860 0.92880 1.02662 1.02995 1.22325 0.95747 0.92659 0.87812 1.22313 1.01452 0.96460 1.03018 1.87952 1.36535 1.70251 1.37057 1.22427 0.86635 0.95822 0.95178 1.22362 0.87887 0.88962 0.97948 0.93003 1.22035 0.96283 0.96345 0.87185 1.47275 1.18720 1.41264 1.29985 1.16175 0.81809 0.81997 0.80331 1.90823 1.52589 1.36807 1.72357 1.45461 1.20635 1.37653 1.33933 1.18436 0.79180 0.95587 0.90565 1.21539 1.03266 1.18479 1.16088 0.89826 1.26072 0.94628 0.98412 1.00442 1.70133 1.06664 1.39030 1.41028 0.85183 0.77570 0.78493 0.77813 1.18655 1.21115 1.18540 1.22616 0.88437 0.91414 1.02581 1.23116 0.96422 0.97009 0.86048 1.87977 1.52222 1.49004 1.40215 0.92700 0.92365 0.89251 0.90896 0.92742 0.89799 0.92731 0.90401 0.90784 0.89556 0.88932 0.75927 0.99680 0.99557 0.92197 0.88547 0.88584 0.93423 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.56 71.98 0.69 -1.26 16 2 C 0.07 1.12 3.34 30.59 0.10 1.22 16 3 C -0.17 -2.43 9.53 71.98 0.69 -1.74 16 4 O -0.40 -8.78 9.96 -144.69 -1.44 -10.22 16 5 C 0.08 1.50 5.41 71.98 0.39 1.89 16 6 C 0.09 2.13 3.06 30.70 0.09 2.22 16 7 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 8 C 0.11 2.85 5.94 86.36 0.51 3.36 16 9 N -0.63 -20.19 3.02 -835.33 -2.52 -22.71 16 10 C 0.70 30.29 8.31 179.05 1.49 31.78 16 11 O -0.64 -33.99 15.82 -3.99 -0.06 -34.05 16 12 N -0.72 -32.04 5.46 -482.30 -2.63 -34.67 16 13 C 0.29 16.04 5.43 85.63 0.47 16.50 16 14 C -0.56 -30.39 9.28 25.60 0.24 -30.16 16 15 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 16 C 0.00 0.23 5.46 84.66 0.46 0.70 16 17 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 18 Si 0.99 42.16 29.54 68.60 2.03 44.19 16 19 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 20 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 22 C 0.07 1.64 6.57 86.36 0.57 2.21 16 23 C 0.05 1.03 6.99 72.08 0.50 1.54 16 24 O -0.38 -9.00 10.35 -144.69 -1.50 -10.50 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.93 7.79 -2.39 -0.02 0.91 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.05 0.78 7.87 -2.39 -0.02 0.76 16 32 H 0.08 1.33 7.87 -2.38 -0.02 1.31 16 33 H 0.07 1.24 8.09 -2.38 -0.02 1.22 16 34 H 0.09 2.66 7.06 -2.39 -0.02 2.65 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.40 14.79 5.88 -92.71 -0.54 14.25 16 37 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 38 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 39 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 40 H 0.10 2.09 5.78 -2.39 -0.01 2.08 16 41 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -75.54 351.57 0.80 -74.75 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.44 Total: 21.01 kcal Atomic # 6 Polarization: 22.06 SS G_CDS: 6.20 Total: 28.26 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -4.87 Total: -113.43 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -3.00 Total: -54.77 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -75.54 0.80 -74.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787360016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.078 kcal (2) G-P(sol) polarization free energy of solvation -75.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds