Wall clock time and date at job start Tue Mar 31 2020 02:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99784 * 2 1 4 4 C 1.53006 * 109.47129 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47242 * 180.02562 * 4 3 2 6 6 N 1.30304 * 126.33648 * 270.15910 * 5 4 3 7 7 N 1.28522 * 110.07385 * 180.30809 * 6 5 4 8 8 C 1.31291 * 109.85787 * 359.71685 * 7 6 5 9 9 S 1.76200 * 126.48325 * 179.97438 * 8 7 6 10 10 C 1.80996 * 100.00335 * 0.02957 * 9 8 7 11 11 H 1.09011 * 109.46939 * 304.99741 * 10 9 8 12 12 C 1.53003 * 109.47324 * 64.99388 * 10 9 8 13 13 C 1.52998 * 109.47306 * 185.00064 * 10 9 8 14 14 C 1.50703 * 109.47106 * 64.99771 * 13 10 9 15 15 H 1.07996 * 120.00079 * 359.97438 * 14 13 10 16 16 C 1.37877 * 119.99754 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99910 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99908 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46771 * 60.00033 * 18 16 14 20 20 H 1.48496 * 109.46745 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47052 * 300.00101 * 18 16 14 22 22 N 1.36533 * 107.02826 * 359.97438 * 8 7 6 23 23 N 1.36605 * 127.14037 * 180.02562 * 22 8 7 24 24 H 1.08992 * 109.47259 * 59.99657 * 1 2 3 25 25 H 1.08996 * 109.46731 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46680 * 299.99677 * 1 2 3 27 27 H 1.08999 * 109.47278 * 60.00406 * 3 2 1 28 28 H 1.09002 * 109.47256 * 300.00635 * 3 2 1 29 29 H 1.08999 * 109.46959 * 59.99905 * 4 3 2 30 30 H 1.08997 * 109.46888 * 300.00123 * 4 3 2 31 31 H 1.08998 * 109.46848 * 60.00571 * 12 10 9 32 32 H 1.08996 * 109.46940 * 180.02562 * 12 10 9 33 33 H 1.08996 * 109.47147 * 300.00239 * 12 10 9 34 34 H 1.08997 * 109.46794 * 184.99724 * 13 10 9 35 35 H 1.08996 * 109.47031 * 304.99475 * 13 10 9 36 36 H 0.96999 * 119.99426 * 179.97438 * 17 16 14 37 37 H 1.00896 * 111.00330 * 90.02165 * 23 22 8 38 38 H 1.00902 * 111.00023 * 213.98415 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1484 2.5614 0.0000 6 7 4.4594 3.2686 -1.0493 7 7 4.9682 4.3925 -0.6889 8 6 5.0041 4.4660 0.6214 9 16 5.6156 5.8130 1.5788 10 6 6.1207 6.9371 0.2532 11 1 6.8106 6.4228 -0.4162 12 6 4.8871 7.3861 -0.5327 13 6 6.8133 8.1600 0.8578 14 6 8.0939 7.7323 1.5274 15 1 8.3844 6.6921 1.5227 16 6 8.8939 8.6687 2.1471 17 7 8.5398 9.9353 2.1533 18 14 10.4808 8.1384 2.9778 19 1 11.3770 7.5074 1.9759 20 1 11.1530 9.3254 3.5645 21 1 10.1741 7.1608 4.0528 22 7 4.4779 3.3014 1.1018 23 7 4.3192 2.9463 2.4113 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6887 1.8464 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.8568 0.6440 -0.8908 30 1 3.8575 0.6436 0.8891 31 1 4.1974 7.9003 0.1366 32 1 5.1914 8.0626 -1.3312 33 1 4.3938 6.5148 -0.9634 34 1 7.0381 8.8774 0.0686 35 1 6.1558 8.6233 1.5934 36 1 9.1025 10.5940 2.5896 37 1 3.4189 3.2403 2.7592 38 1 4.4480 1.9532 2.5349 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787492060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:38 Heat of formation + Delta-G solvation = 42.481661 kcal Electronic energy + Delta-G solvation = -20116.178003 eV Core-core repulsion = 16929.109412 eV Total energy + Delta-G solvation = -3187.068591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.120 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -42.87859 -38.40678 -36.51253 -34.56113 -33.53354 -32.06261 -29.88577 -29.27760 -27.44188 -26.79353 -24.01571 -23.29070 -22.67050 -21.35820 -20.49648 -18.28480 -17.63887 -16.84223 -16.71188 -16.35081 -16.21140 -15.64167 -14.91839 -14.81726 -14.50744 -14.03852 -13.83312 -12.98174 -12.68003 -12.46795 -12.04184 -12.00014 -11.83295 -11.73406 -11.52437 -11.13732 -11.11777 -10.81629 -10.67368 -10.51711 -10.39401 -10.17080 -9.83913 -9.61973 -9.41566 -9.37584 -9.15748 -8.38665 -7.05768 -6.03947 -4.06265 1.52718 1.61934 2.30041 2.78638 2.91862 3.22013 3.35276 3.38706 3.42628 4.05832 4.31020 4.45344 4.54659 4.67491 4.81881 4.91230 4.94465 5.20568 5.24072 5.33431 5.35809 5.46723 5.69683 5.76495 5.87636 5.93861 6.16892 6.31500 6.57914 6.61070 6.64349 6.81483 7.35900 7.51401 7.55902 7.93195 8.29343 8.69653 8.98578 9.58177 11.07008 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.033529 B = 0.003407 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.893421 B = 8216.107769 C = 8593.324978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.067 3.933 4 C -0.025 4.025 5 C 0.127 3.873 6 N -0.265 5.265 7 N -0.295 5.295 8 C 0.198 3.802 9 S 0.048 5.952 10 C -0.065 4.065 11 H 0.091 0.909 12 C -0.147 4.147 13 C 0.038 3.962 14 C -0.523 4.523 15 H 0.063 0.937 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.275 1.275 22 N -0.313 5.313 23 N -0.581 5.581 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.027 0.973 36 H 0.262 0.738 37 H 0.363 0.637 38 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.424 -17.202 -0.556 23.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.011 4.011 4 C -0.065 4.065 5 C -0.144 4.144 6 N -0.106 5.106 7 N -0.141 5.141 8 C -0.175 4.175 9 S 0.278 5.722 10 C -0.195 4.195 11 H 0.110 0.890 12 C -0.207 4.207 13 C -0.001 4.001 14 C -0.562 4.562 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.200 1.200 22 N -0.098 5.098 23 N -0.212 5.212 24 H 0.063 0.937 25 H 0.107 0.893 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.130 0.870 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.181 0.819 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -14.400 -16.180 -0.601 21.668 hybrid contribution -0.324 -1.187 0.389 1.290 sum -14.724 -17.367 -0.212 22.769 Atomic orbital electron populations 1.22773 0.80380 1.03012 1.00280 1.87834 1.20212 1.27324 1.95511 1.22432 0.92566 0.84995 1.01075 1.19692 0.92975 0.87967 1.05836 1.24885 1.07303 0.98425 0.83813 1.73925 1.13101 1.00087 1.23456 1.74883 1.20425 1.12640 1.06172 1.27700 1.01376 0.93304 0.95120 1.86338 1.71474 1.05428 1.08953 1.23726 0.99719 0.99530 0.96502 0.89033 1.22125 0.96940 1.01614 0.99976 1.19084 0.94860 0.89637 0.96492 1.21233 1.05642 0.94419 1.34909 0.91862 1.24981 0.98090 0.94842 0.96177 1.69945 1.38353 1.00984 1.44003 0.86638 0.83461 0.77977 0.79918 1.20158 1.21342 1.20016 1.45031 1.48189 1.14753 1.01814 1.59553 1.39907 1.24071 0.97670 0.93728 0.89282 0.93987 0.93673 0.91935 0.87037 0.89615 0.92683 0.91924 0.91870 0.94113 0.95500 0.92822 0.81928 0.81058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.41 10.70 -35.23 -0.38 -3.79 16 3 C 0.07 0.57 5.92 37.16 0.22 0.79 16 4 C -0.02 -0.23 6.06 -27.88 -0.17 -0.40 16 5 C 0.13 1.72 7.38 -154.00 -1.14 0.59 16 6 N -0.26 -4.59 12.18 32.99 0.40 -4.19 16 7 N -0.30 -5.67 9.75 30.68 0.30 -5.37 16 8 C 0.20 3.54 7.88 -88.34 -0.70 2.85 16 9 S 0.05 0.93 21.02 -107.50 -2.26 -1.33 16 10 C -0.07 -1.37 2.29 -26.73 -0.06 -1.43 16 11 H 0.09 2.02 8.14 -51.91 -0.42 1.60 16 12 C -0.15 -2.71 9.01 37.16 0.33 -2.37 16 13 C 0.04 0.95 4.44 -27.88 -0.12 0.83 16 14 C -0.52 -14.34 8.53 -34.44 -0.29 -14.63 16 15 H 0.06 1.72 7.60 -52.49 -0.40 1.32 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 18 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 22 N -0.31 -4.42 3.81 -9.93 -0.04 -4.46 16 23 N -0.58 -5.89 10.41 60.35 0.63 -5.26 16 24 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 25 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 0.61 7.40 -51.93 -0.38 0.22 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.15 5.91 -51.93 -0.31 0.85 16 34 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.36 2.80 9.21 -181.37 -1.67 1.13 16 38 H 0.37 2.61 8.26 -181.36 -1.50 1.11 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -32.80 336.25 -9.52 -42.32 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -8.04 Total: -3.20 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.91 Total: -10.87 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 2.03 Total: -44.73 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -0.38 Total: -3.79 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.26 Total: -1.33 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.80 -9.52 -42.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787492060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.803 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds