Wall clock time and date at job start Tue Mar 31 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99784 * 2 1 4 4 C 1.53006 * 109.47129 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47242 * 180.02562 * 4 3 2 6 6 N 1.30304 * 126.33648 * 270.15910 * 5 4 3 7 7 N 1.28522 * 110.07385 * 180.30809 * 6 5 4 8 8 C 1.31291 * 109.85787 * 359.71685 * 7 6 5 9 9 S 1.76200 * 126.48325 * 179.97438 * 8 7 6 10 10 C 1.80996 * 100.00335 * 0.02957 * 9 8 7 11 11 H 1.09011 * 109.46939 * 304.99741 * 10 9 8 12 12 C 1.53003 * 109.47324 * 64.99388 * 10 9 8 13 13 C 1.52998 * 109.47306 * 185.00064 * 10 9 8 14 14 C 1.50703 * 109.47106 * 64.99771 * 13 10 9 15 15 H 1.07996 * 120.00079 * 359.97438 * 14 13 10 16 16 C 1.37877 * 119.99754 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99910 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99908 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46771 * 60.00033 * 18 16 14 20 20 H 1.48496 * 109.46745 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47052 * 300.00101 * 18 16 14 22 22 N 1.36533 * 107.02826 * 359.97438 * 8 7 6 23 23 N 1.36605 * 127.14037 * 180.02562 * 22 8 7 24 24 H 1.08992 * 109.47259 * 59.99657 * 1 2 3 25 25 H 1.08996 * 109.46731 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46680 * 299.99677 * 1 2 3 27 27 H 1.08999 * 109.47278 * 60.00406 * 3 2 1 28 28 H 1.09002 * 109.47256 * 300.00635 * 3 2 1 29 29 H 1.08999 * 109.46959 * 59.99905 * 4 3 2 30 30 H 1.08997 * 109.46888 * 300.00123 * 4 3 2 31 31 H 1.08998 * 109.46848 * 60.00571 * 12 10 9 32 32 H 1.08996 * 109.46940 * 180.02562 * 12 10 9 33 33 H 1.08996 * 109.47147 * 300.00239 * 12 10 9 34 34 H 1.08997 * 109.46794 * 184.99724 * 13 10 9 35 35 H 1.08996 * 109.47031 * 304.99475 * 13 10 9 36 36 H 0.96999 * 119.99426 * 179.97438 * 17 16 14 37 37 H 1.00896 * 111.00330 * 90.02165 * 23 22 8 38 38 H 1.00902 * 111.00023 * 213.98415 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1484 2.5614 0.0000 6 7 4.4594 3.2686 -1.0493 7 7 4.9682 4.3925 -0.6889 8 6 5.0041 4.4660 0.6214 9 16 5.6156 5.8130 1.5788 10 6 6.1207 6.9371 0.2532 11 1 6.8106 6.4228 -0.4162 12 6 4.8871 7.3861 -0.5327 13 6 6.8133 8.1600 0.8578 14 6 8.0939 7.7323 1.5274 15 1 8.3844 6.6921 1.5227 16 6 8.8939 8.6687 2.1471 17 7 8.5398 9.9353 2.1533 18 14 10.4808 8.1384 2.9778 19 1 11.3770 7.5074 1.9759 20 1 11.1530 9.3254 3.5645 21 1 10.1741 7.1608 4.0528 22 7 4.4779 3.3014 1.1018 23 7 4.3192 2.9463 2.4113 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6887 1.8464 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.8568 0.6440 -0.8908 30 1 3.8575 0.6436 0.8891 31 1 4.1974 7.9003 0.1366 32 1 5.1914 8.0626 -1.3312 33 1 4.3938 6.5148 -0.9634 34 1 7.0381 8.8774 0.0686 35 1 6.1558 8.6233 1.5934 36 1 9.1025 10.5940 2.5896 37 1 3.4189 3.2403 2.7592 38 1 4.4480 1.9532 2.5349 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787492060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:35 Heat of formation + Delta-G solvation = 21.318333 kcal Electronic energy + Delta-G solvation = -20117.095714 eV Core-core repulsion = 16929.109412 eV Total energy + Delta-G solvation = -3187.986301 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.120 amu Computer time = 3.38 seconds Orbital eigenvalues (eV) -44.10055 -39.02692 -37.59149 -36.42474 -34.46318 -34.01462 -31.00603 -30.34301 -29.27401 -27.40024 -25.24987 -24.82946 -23.95473 -22.54413 -22.05351 -19.41609 -18.61124 -18.48222 -17.95966 -17.47852 -17.00946 -16.57572 -16.46108 -16.34981 -15.79385 -15.03484 -14.77713 -14.46654 -14.28014 -13.70313 -13.41371 -13.25803 -13.16935 -12.83726 -12.66198 -12.60748 -12.45023 -12.39158 -12.30704 -12.16134 -11.74178 -11.52952 -11.22460 -11.00390 -10.99603 -10.75925 -10.53519 -10.50670 -8.54312 -8.18022 -6.26955 0.14785 0.44415 1.17033 1.33538 1.43237 1.45358 1.53004 1.53840 2.43756 2.49350 3.16988 3.27005 3.48719 3.84778 3.95226 4.09547 4.10412 4.17037 4.23692 4.44949 4.48321 4.51542 4.55957 4.56707 4.80252 4.84577 4.87016 4.93088 5.03468 5.25919 5.41474 5.51906 5.67357 5.79193 6.04519 6.19065 6.37810 6.84662 7.41145 7.43889 8.93268 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.033529 B = 0.003407 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.893421 B = 8216.107769 C = 8593.324978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.073 3.927 4 C -0.023 4.023 5 C 0.157 3.843 6 N -0.305 5.305 7 N -0.321 5.321 8 C 0.180 3.820 9 S 0.042 5.958 10 C -0.060 4.060 11 H 0.076 0.924 12 C -0.137 4.137 13 C 0.046 3.954 14 C -0.535 4.535 15 H 0.062 0.938 16 C 0.009 3.991 17 N -0.928 5.928 18 Si 0.956 3.044 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.266 1.266 22 N -0.306 5.306 23 N -0.583 5.583 24 H 0.046 0.954 25 H 0.103 0.897 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.019 0.981 35 H 0.009 0.991 36 H 0.264 0.736 37 H 0.380 0.620 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.149 -19.584 0.475 25.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C -0.005 4.005 4 C -0.062 4.062 5 C -0.115 4.115 6 N -0.146 5.146 7 N -0.166 5.166 8 C -0.195 4.195 9 S 0.272 5.728 10 C -0.189 4.189 11 H 0.094 0.906 12 C -0.196 4.196 13 C 0.008 3.992 14 C -0.573 4.573 15 H 0.080 0.920 16 C -0.190 4.190 17 N -0.568 5.568 18 Si 0.781 3.219 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.191 1.191 22 N -0.088 5.088 23 N -0.219 5.219 24 H 0.064 0.936 25 H 0.122 0.878 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.200 0.800 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -15.146 -18.594 0.429 23.986 hybrid contribution -0.220 -0.615 0.072 0.657 sum -15.366 -19.209 0.501 24.604 Atomic orbital electron populations 1.22969 0.78989 1.04238 1.00899 1.87802 1.21723 1.27119 1.95613 1.22299 0.91825 0.85204 1.01186 1.19897 0.93472 0.85386 1.07490 1.25624 1.04258 0.98893 0.82768 1.73872 1.15177 1.00360 1.25157 1.74788 1.20909 1.13867 1.07023 1.27236 1.03113 0.94193 0.94959 1.86084 1.72497 1.06149 1.08086 1.23407 1.00273 0.98412 0.96834 0.90599 1.22023 0.95857 1.01796 0.99877 1.18862 0.94274 0.90834 0.95274 1.21540 1.06521 0.94399 1.34854 0.91982 1.25812 1.01431 0.94853 0.96898 1.70060 1.39732 1.02019 1.45039 0.85634 0.79450 0.77801 0.79054 1.19599 1.20829 1.19106 1.44992 1.46828 1.13551 1.03437 1.59597 1.41307 1.25795 0.95199 0.93559 0.87847 0.92938 0.92394 0.93124 0.86752 0.86608 0.91914 0.91460 0.91549 0.96294 0.97275 0.92706 0.80012 0.78807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.40 -5.96 10.70 -148.98 -1.59 -7.56 16 3 C 0.07 1.05 5.92 71.98 0.43 1.48 16 4 C -0.02 -0.35 6.06 29.85 0.18 -0.17 16 5 C 0.16 3.95 7.38 137.63 1.02 4.96 16 6 N -0.31 -10.36 12.18 -49.53 -0.60 -10.97 16 7 N -0.32 -12.24 9.75 -56.85 -0.55 -12.79 16 8 C 0.18 6.33 7.88 179.55 1.42 7.74 16 9 S 0.04 1.64 21.02 -56.49 -1.19 0.45 16 10 C -0.06 -2.56 2.29 30.59 0.07 -2.49 16 11 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 12 C -0.14 -5.07 9.01 71.98 0.65 -4.42 16 13 C 0.05 2.38 4.44 29.85 0.13 2.51 16 14 C -0.53 -29.75 8.53 25.60 0.22 -29.53 16 15 H 0.06 3.40 7.60 -2.91 -0.02 3.38 16 16 C 0.01 0.48 5.46 84.65 0.46 0.94 16 17 N -0.93 -55.25 13.29 21.45 0.28 -54.96 16 18 Si 0.96 44.18 29.54 68.60 2.03 46.20 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 N -0.31 -8.02 3.81 -185.32 -0.71 -8.73 16 23 N -0.58 -10.14 10.41 37.02 0.39 -9.75 16 24 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.12 1.14 7.40 -2.39 -0.02 1.13 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.07 2.44 5.91 -2.39 -0.01 2.42 16 34 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 37 H 0.38 4.68 9.21 -210.56 -1.94 2.74 16 38 H 0.39 4.03 8.26 -210.55 -1.74 2.29 16 Total: -1.00 -71.34 336.25 1.27 -70.06 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -2.60 Total: 5.54 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 5.82 Total: -17.50 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -1.19 Total: -97.20 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -1.59 Total: -7.56 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.19 Total: 0.45 kcal Total: -71.34 1.27 -70.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787492060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.383 kcal (2) G-P(sol) polarization free energy of solvation -71.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.38 seconds