Wall clock time and date at job start Tue Mar 31 2020 03:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 117.00191 * 2 1 4 4 O 1.20825 * 119.99756 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99879 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.52628 * 300.08051 * 5 3 2 7 7 C 1.53041 * 109.49329 * 179.97438 * 5 3 2 8 8 C 1.53038 * 109.52504 * 178.67589 * 7 5 3 9 9 H 1.09003 * 109.50109 * 181.35881 * 8 7 5 10 10 O 1.42906 * 109.49967 * 301.42687 * 8 7 5 11 11 C 1.53197 * 109.31181 * 61.37301 * 8 7 5 12 12 N 1.46921 * 108.77761 * 305.36691 * 11 8 7 13 13 C 1.34775 * 120.63006 * 233.63118 * 12 11 8 14 14 O 1.21587 * 120.00266 * 354.95488 * 13 12 11 15 15 N 1.34785 * 120.00007 * 174.96354 * 13 12 11 16 16 C 1.46497 * 119.99846 * 185.07235 * 15 13 12 17 17 C 1.50701 * 109.46774 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00363 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99793 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00083 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00126 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47050 * 90.00044 * 21 19 17 23 23 H 1.48504 * 109.47280 * 209.99795 * 21 19 17 24 24 H 1.48500 * 109.47154 * 330.00208 * 21 19 17 25 25 C 1.46927 * 118.73807 * 53.60492 * 12 11 8 26 26 H 1.09004 * 109.47400 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47267 * 300.00244 * 1 2 3 28 28 H 1.09004 * 109.47217 * 60.00145 * 1 2 3 29 29 H 1.09000 * 109.46036 * 58.67193 * 7 5 3 30 30 H 1.08994 * 109.46083 * 298.68913 * 7 5 3 31 31 H 0.96700 * 113.99619 * 179.97438 * 10 8 7 32 32 H 1.09000 * 109.58338 * 65.15491 * 11 8 7 33 33 H 1.09001 * 109.58729 * 185.43750 * 11 8 7 34 34 H 0.96994 * 119.99865 * 5.06384 * 15 13 12 35 35 H 1.09001 * 109.47322 * 299.99708 * 16 15 13 36 36 H 1.09001 * 109.47500 * 59.99500 * 16 15 13 37 37 H 0.96996 * 119.99876 * 179.97438 * 20 19 17 38 38 H 1.08999 * 109.58552 * 66.18028 * 25 12 11 39 39 H 1.09004 * 109.58529 * 186.46323 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9568 0.7798 0.8898 7 6 4.0009 2.7421 -0.0002 8 6 5.5288 2.8231 0.0337 9 1 5.8373 3.8683 0.0575 10 8 6.0161 2.1553 1.1994 11 6 6.0998 2.1491 -1.2179 12 7 5.5697 0.7814 -1.3020 13 6 6.4023 -0.2715 -1.4226 14 8 7.5972 -0.0897 -1.5550 15 7 5.9104 -1.5261 -1.3967 16 6 6.8236 -2.6714 -1.4158 17 6 6.0266 -3.9499 -1.3794 18 1 4.9479 -3.9130 -1.3450 19 6 6.6748 -5.1668 -1.3900 20 7 5.9793 -6.2826 -1.3578 21 14 8.5407 -5.2308 -1.4502 22 1 9.0807 -5.2357 -0.0668 23 1 8.9713 -6.4656 -2.1540 24 1 9.0535 -4.0420 -2.1775 25 6 4.1147 0.5833 -1.2516 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.5913 3.2426 0.8772 30 1 3.6314 3.2298 -0.9022 31 1 6.9792 2.1670 1.2855 32 1 5.8028 2.7112 -2.1033 33 1 7.1874 2.1183 -1.1524 34 1 4.9518 -1.6706 -1.3652 35 1 7.4236 -2.6427 -2.3254 36 1 7.4796 -2.6277 -0.5464 37 1 6.4353 -7.1387 -1.3656 38 1 3.6559 1.0178 -2.1398 39 1 3.8924 -0.4830 -1.2098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827013783.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:37 Heat of formation + Delta-G solvation = -155.310835 kcal Electronic energy + Delta-G solvation = -23617.605032 eV Core-core repulsion = 19946.913893 eV Total energy + Delta-G solvation = -3670.691139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.00636 -39.89141 -38.02509 -36.64270 -35.45733 -34.37068 -32.70263 -32.28956 -30.59164 -28.06300 -27.71689 -25.30524 -24.44055 -22.38710 -21.36284 -20.32230 -19.49061 -18.47354 -17.69056 -17.11595 -16.72770 -16.59663 -16.34910 -15.60959 -15.24367 -14.77506 -14.58940 -14.21619 -14.17563 -13.62727 -13.51943 -13.31077 -13.08781 -12.89721 -12.37048 -12.34414 -12.16464 -11.82422 -11.52425 -11.34076 -11.09096 -10.96230 -10.92429 -10.74901 -10.58089 -10.27721 -9.95120 -9.55789 -9.44175 -8.76531 -8.57702 -7.98270 -6.18703 -4.20461 1.98845 2.50009 2.99770 3.29172 3.36105 3.44596 3.68690 4.06466 4.33481 4.36368 4.37062 4.60652 4.68864 4.74614 4.90049 4.97310 5.02774 5.03763 5.16885 5.29807 5.38509 5.41761 5.51458 5.54391 5.67420 5.83579 5.92719 6.21046 6.51886 6.76252 7.13000 7.22271 7.36273 7.48181 7.52567 7.56893 8.26182 8.64961 8.80856 9.14613 9.42202 10.93288 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.016136 B = 0.004983 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.847485 B = 5617.537600 C = 7007.268316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.352 6.352 3 C 0.470 3.530 4 O -0.509 6.509 5 C -0.093 4.093 6 H 0.126 0.874 7 C -0.093 4.093 8 C 0.091 3.909 9 H 0.072 0.928 10 O -0.559 6.559 11 C 0.096 3.904 12 N -0.627 5.627 13 C 0.704 3.296 14 O -0.600 6.600 15 N -0.721 5.721 16 C 0.237 3.763 17 C -0.542 4.542 18 H 0.079 0.921 19 C 0.078 3.922 20 N -0.893 5.893 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.260 1.260 25 C 0.125 3.875 26 H 0.104 0.896 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.382 0.618 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.392 0.608 35 H 0.024 0.976 36 H 0.018 0.982 37 H 0.267 0.733 38 H 0.071 0.929 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.379 17.930 2.380 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.268 6.268 3 C 0.313 3.687 4 O -0.397 6.397 5 C -0.113 4.113 6 H 0.144 0.856 7 C -0.131 4.131 8 C 0.031 3.969 9 H 0.090 0.910 10 O -0.365 6.365 11 C -0.028 4.028 12 N -0.366 5.366 13 C 0.405 3.595 14 O -0.480 6.480 15 N -0.375 5.375 16 C 0.115 3.885 17 C -0.580 4.580 18 H 0.097 0.903 19 C -0.126 4.126 20 N -0.530 5.530 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.184 1.184 25 C 0.000 4.000 26 H 0.122 0.878 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.230 0.770 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.228 0.772 35 H 0.042 0.958 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.327 17.968 2.374 19.549 hybrid contribution 0.675 -0.136 -0.050 0.690 sum -6.652 17.832 2.324 19.173 Atomic orbital electron populations 1.23304 0.76157 1.04052 1.02353 1.86572 1.23566 1.33046 1.83602 1.23664 0.91719 0.81435 0.71915 1.90649 1.67150 1.36415 1.45490 1.21415 0.86787 0.99822 1.03266 0.85617 1.21426 0.93540 0.93869 1.04269 1.22209 0.93969 0.95199 0.85517 0.91048 1.86493 1.27194 1.79503 1.43349 1.22162 1.01114 0.82032 0.97494 1.47023 1.04797 1.05726 1.79022 1.15945 0.84742 0.80813 0.77986 1.90847 1.13798 1.84694 1.58615 1.45583 1.10860 1.04090 1.76967 1.19379 0.89703 0.82767 0.96659 1.21086 0.95226 0.88571 1.53067 0.90278 1.24772 0.98647 0.95232 0.93910 1.69882 1.35973 0.97624 1.49566 0.86820 0.85624 0.78201 0.79054 1.19872 1.20973 1.18441 1.21448 0.81375 1.01794 0.95352 0.87763 0.91967 0.91877 0.90043 0.89535 0.77031 0.91107 0.88255 0.77180 0.95813 0.96394 0.92302 0.91050 0.88492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.35 -4.19 10.50 -39.25 -0.41 -4.60 16 3 C 0.47 5.73 7.26 36.01 0.26 5.99 16 4 O -0.51 -7.00 15.73 -18.75 -0.29 -7.29 16 5 C -0.09 -1.07 2.64 -91.65 -0.24 -1.31 16 6 H 0.13 1.61 7.61 -51.93 -0.40 1.21 16 7 C -0.09 -0.94 4.21 -26.69 -0.11 -1.05 16 8 C 0.09 0.88 3.81 -26.61 -0.10 0.77 16 9 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 10 O -0.56 -6.37 12.51 -35.23 -0.44 -6.81 16 11 C 0.10 1.10 6.06 -3.71 -0.02 1.08 16 12 N -0.63 -9.10 2.91 -178.50 -0.52 -9.62 16 13 C 0.70 13.76 8.30 -86.91 -0.72 13.04 16 14 O -0.60 -13.73 15.79 5.29 0.08 -13.65 16 15 N -0.72 -14.97 5.46 -66.41 -0.36 -15.33 16 16 C 0.24 5.89 4.50 -5.19 -0.02 5.87 16 17 C -0.54 -14.87 9.83 -34.44 -0.34 -15.21 16 18 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 20 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 21 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 25 C 0.12 1.52 5.65 -3.71 -0.02 1.50 16 26 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 28 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 29 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.09 0.78 8.13 -51.93 -0.42 0.36 16 31 H 0.38 3.38 9.08 45.56 0.41 3.79 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.26 7.04 -51.93 -0.37 0.89 16 34 H 0.39 7.32 5.78 -40.82 -0.24 7.09 16 35 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 36 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 1.25 5.56 -51.93 -0.29 0.96 16 LS Contribution 324.38 15.07 4.89 4.89 Total: -1.00 -34.68 324.38 -5.90 -40.58 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.59 Total: 6.59 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: -0.35 Total: 14.18 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.11 Total: -50.65 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -1.06 Total: -32.35 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.68 -5.90 -40.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827013783.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.731 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds