Wall clock time and date at job start Tue Mar 31 2020 03:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 117.00191 * 2 1 4 4 O 1.20825 * 119.99756 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99879 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.52628 * 300.08051 * 5 3 2 7 7 C 1.53041 * 109.49329 * 179.97438 * 5 3 2 8 8 C 1.53038 * 109.52504 * 178.67589 * 7 5 3 9 9 H 1.09003 * 109.50109 * 181.35881 * 8 7 5 10 10 O 1.42906 * 109.49967 * 301.42687 * 8 7 5 11 11 C 1.53197 * 109.31181 * 61.37301 * 8 7 5 12 12 N 1.46921 * 108.77761 * 305.36691 * 11 8 7 13 13 C 1.34775 * 120.63006 * 233.63118 * 12 11 8 14 14 O 1.21587 * 120.00266 * 354.95488 * 13 12 11 15 15 N 1.34785 * 120.00007 * 174.96354 * 13 12 11 16 16 C 1.46497 * 119.99846 * 185.07235 * 15 13 12 17 17 C 1.50701 * 109.46774 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00363 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99793 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00083 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00126 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47050 * 90.00044 * 21 19 17 23 23 H 1.48504 * 109.47280 * 209.99795 * 21 19 17 24 24 H 1.48500 * 109.47154 * 330.00208 * 21 19 17 25 25 C 1.46927 * 118.73807 * 53.60492 * 12 11 8 26 26 H 1.09004 * 109.47400 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47267 * 300.00244 * 1 2 3 28 28 H 1.09004 * 109.47217 * 60.00145 * 1 2 3 29 29 H 1.09000 * 109.46036 * 58.67193 * 7 5 3 30 30 H 1.08994 * 109.46083 * 298.68913 * 7 5 3 31 31 H 0.96700 * 113.99619 * 179.97438 * 10 8 7 32 32 H 1.09000 * 109.58338 * 65.15491 * 11 8 7 33 33 H 1.09001 * 109.58729 * 185.43750 * 11 8 7 34 34 H 0.96994 * 119.99865 * 5.06384 * 15 13 12 35 35 H 1.09001 * 109.47322 * 299.99708 * 16 15 13 36 36 H 1.09001 * 109.47500 * 59.99500 * 16 15 13 37 37 H 0.96996 * 119.99876 * 179.97438 * 20 19 17 38 38 H 1.08999 * 109.58552 * 66.18028 * 25 12 11 39 39 H 1.09004 * 109.58529 * 186.46323 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9568 0.7798 0.8898 7 6 4.0009 2.7421 -0.0002 8 6 5.5288 2.8231 0.0337 9 1 5.8373 3.8683 0.0575 10 8 6.0161 2.1553 1.1994 11 6 6.0998 2.1491 -1.2179 12 7 5.5697 0.7814 -1.3020 13 6 6.4023 -0.2715 -1.4226 14 8 7.5972 -0.0897 -1.5550 15 7 5.9104 -1.5261 -1.3967 16 6 6.8236 -2.6714 -1.4158 17 6 6.0266 -3.9499 -1.3794 18 1 4.9479 -3.9130 -1.3450 19 6 6.6748 -5.1668 -1.3900 20 7 5.9793 -6.2826 -1.3578 21 14 8.5407 -5.2308 -1.4502 22 1 9.0807 -5.2357 -0.0668 23 1 8.9713 -6.4656 -2.1540 24 1 9.0535 -4.0420 -2.1775 25 6 4.1147 0.5833 -1.2516 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.5913 3.2426 0.8772 30 1 3.6314 3.2298 -0.9022 31 1 6.9792 2.1670 1.2855 32 1 5.8028 2.7112 -2.1033 33 1 7.1874 2.1183 -1.1524 34 1 4.9518 -1.6706 -1.3652 35 1 7.4236 -2.6427 -2.3254 36 1 7.4796 -2.6277 -0.5464 37 1 6.4353 -7.1387 -1.3656 38 1 3.6559 1.0178 -2.1398 39 1 3.8924 -0.4830 -1.2098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827013783.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:36 Heat of formation + Delta-G solvation = -182.585374 kcal Electronic energy + Delta-G solvation = -23618.787744 eV Core-core repulsion = 19946.913893 eV Total energy + Delta-G solvation = -3671.873852 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.02074 -41.12509 -39.17698 -37.58116 -36.51726 -36.18251 -34.40347 -33.70104 -31.60649 -29.74231 -28.66593 -26.48124 -25.39628 -24.10998 -22.49962 -21.49794 -20.75606 -19.82599 -18.70453 -18.43888 -18.06063 -17.60830 -17.52405 -17.01616 -16.46270 -16.36165 -15.68681 -15.46845 -15.23062 -15.05688 -14.76446 -14.43553 -14.32050 -14.26009 -14.01517 -13.69250 -13.06062 -13.00579 -12.80925 -12.67029 -12.38845 -12.29664 -11.95978 -11.89563 -11.79453 -11.61437 -11.56249 -11.28907 -10.97897 -10.88786 -10.08979 -9.42965 -8.36767 -6.43503 1.01888 1.36037 1.37700 1.51121 1.56789 1.81943 2.17354 2.31556 2.98859 3.03035 3.28130 3.48727 3.68260 3.71035 3.88874 4.06252 4.15015 4.29394 4.34051 4.36578 4.58003 4.64081 4.66480 4.72689 4.75122 4.84682 4.97789 5.08235 5.11005 5.26465 5.32729 5.49990 5.55682 5.88464 6.20222 6.57858 6.62216 6.83473 7.07205 7.21340 7.61888 8.78017 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.016136 B = 0.004983 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.847485 B = 5617.537600 C = 7007.268316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.475 3.525 4 O -0.524 6.524 5 C -0.086 4.086 6 H 0.111 0.889 7 C -0.091 4.091 8 C 0.098 3.902 9 H 0.107 0.893 10 O -0.580 6.580 11 C 0.090 3.910 12 N -0.617 5.617 13 C 0.702 3.298 14 O -0.636 6.636 15 N -0.724 5.724 16 C 0.252 3.748 17 C -0.545 4.545 18 H 0.057 0.943 19 C 0.028 3.972 20 N -0.931 5.931 21 Si 0.938 3.062 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.259 1.259 25 C 0.123 3.877 26 H 0.124 0.876 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.391 0.609 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.401 0.599 35 H 0.011 0.989 36 H 0.010 0.990 37 H 0.272 0.728 38 H 0.096 0.904 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 19.620 2.243 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.318 3.682 4 O -0.413 6.413 5 C -0.106 4.106 6 H 0.129 0.871 7 C -0.129 4.129 8 C 0.038 3.962 9 H 0.124 0.876 10 O -0.388 6.388 11 C -0.033 4.033 12 N -0.354 5.354 13 C 0.404 3.596 14 O -0.518 6.518 15 N -0.380 5.380 16 C 0.127 3.873 17 C -0.583 4.583 18 H 0.075 0.925 19 C -0.173 4.173 20 N -0.570 5.570 21 Si 0.762 3.238 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.184 1.184 25 C 0.000 4.000 26 H 0.142 0.858 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.240 0.760 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.239 0.761 35 H 0.029 0.971 36 H 0.028 0.972 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.311 19.702 2.247 21.135 hybrid contribution 0.517 -0.620 0.003 0.807 sum -6.793 19.083 2.250 20.380 Atomic orbital electron populations 1.23571 0.74558 1.05592 1.02857 1.86563 1.25285 1.32982 1.83334 1.23687 0.91818 0.81281 0.71401 1.90640 1.67510 1.36849 1.46349 1.21332 0.86398 1.00861 1.02030 0.87119 1.21481 0.93791 0.92571 1.05041 1.22303 0.93460 0.96517 0.83888 0.87551 1.86469 1.28232 1.80022 1.44114 1.22490 1.00560 0.80409 0.99812 1.47018 1.05302 1.05705 1.77367 1.16029 0.84736 0.81164 0.77710 1.90816 1.15525 1.85291 1.60182 1.45340 1.10832 1.04003 1.77788 1.18956 0.89653 0.83104 0.95540 1.21264 0.94568 0.89946 1.52526 0.92454 1.25572 1.03230 0.94894 0.93557 1.69983 1.37954 0.98339 1.50752 0.85850 0.80095 0.78419 0.79473 1.18967 1.19878 1.18365 1.21582 0.79966 1.01631 0.96869 0.85827 0.91605 0.91258 0.90139 0.87922 0.75968 0.88368 0.89497 0.76134 0.97061 0.97229 0.91875 0.88627 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.37 -8.35 10.50 -51.38 -0.54 -8.89 16 3 C 0.47 10.93 7.26 71.24 0.52 11.45 16 4 O -0.52 -13.53 15.73 21.97 0.35 -13.18 16 5 C -0.09 -1.85 2.64 -11.46 -0.03 -1.88 16 6 H 0.11 2.75 7.61 -2.39 -0.02 2.74 16 7 C -0.09 -1.59 4.21 30.62 0.13 -1.46 16 8 C 0.10 1.60 3.81 30.67 0.12 1.72 16 9 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 10 O -0.58 -12.25 12.51 -148.98 -1.86 -14.11 16 11 C 0.09 1.84 6.06 86.37 0.52 2.36 16 12 N -0.62 -17.00 2.91 -836.90 -2.44 -19.44 16 13 C 0.70 27.12 8.30 179.05 1.49 28.61 16 14 O -0.64 -28.94 15.79 -3.99 -0.06 -29.00 16 15 N -0.72 -30.16 5.46 -482.29 -2.63 -32.79 16 16 C 0.25 12.56 4.50 85.63 0.39 12.94 16 17 C -0.55 -30.35 9.83 25.60 0.25 -30.10 16 18 H 0.06 3.36 7.84 -2.91 -0.02 3.34 16 19 C 0.03 1.57 5.47 84.65 0.46 2.03 16 20 N -0.93 -55.69 13.96 21.45 0.30 -55.39 16 21 Si 0.94 44.13 27.47 68.60 1.88 46.01 16 22 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.26 -12.11 6.54 99.48 0.65 -11.46 16 25 C 0.12 2.82 5.65 86.36 0.49 3.30 16 26 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 28 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 29 H 0.08 1.46 8.07 -2.39 -0.02 1.45 16 30 H 0.10 1.48 8.13 -2.39 -0.02 1.46 16 31 H 0.39 6.41 9.08 -74.06 -0.67 5.73 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 2.06 7.04 -2.39 -0.02 2.04 16 34 H 0.40 15.09 5.78 -92.71 -0.54 14.55 16 35 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 36 H 0.01 0.50 7.57 -2.39 -0.02 0.49 16 37 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.09 2.17 5.56 -2.39 -0.01 2.16 16 Total: -1.00 -74.17 324.38 0.34 -73.83 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -0.18 Total: 22.34 kcal Atomic # 6 Polarization: 25.10 SS G_CDS: 5.53 Total: 30.62 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -4.77 Total: -107.62 kcal Atomic # 8 Polarization: -63.06 SS G_CDS: -2.12 Total: -65.18 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Total: -74.17 0.34 -73.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827013783.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.755 kcal (2) G-P(sol) polarization free energy of solvation -74.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds