Wall clock time and date at job start Tue Mar 31 2020 03:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99973 * 2 1 4 4 H 1.48502 * 109.47097 * 269.99739 * 3 2 1 5 5 H 1.48497 * 109.47019 * 29.99765 * 3 2 1 6 6 H 1.48493 * 109.47179 * 149.99560 * 3 2 1 7 7 C 1.37877 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00016 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99995 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.47507 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00160 * 180.02562 * 10 9 7 12 12 O 1.21585 * 119.99743 * 4.98794 * 11 10 9 13 13 N 1.34775 * 120.00013 * 184.98681 * 11 10 9 14 14 C 1.46504 * 119.99820 * 5.08850 * 13 11 10 15 15 C 1.52998 * 109.47370 * 270.00141 * 14 13 11 16 16 O 1.42902 * 109.47018 * 65.00240 * 15 14 13 17 17 C 1.42906 * 113.99725 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.46652 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.47203 * 65.00366 * 18 17 16 20 20 C 1.46496 * 120.00328 * 185.09383 * 13 11 10 21 21 C 1.53788 * 113.61244 * 43.65495 * 20 13 11 22 22 C 1.53960 * 87.01844 * 220.05188 * 21 20 13 23 23 C 1.53775 * 113.61235 * 306.05145 * 20 13 11 24 24 H 0.97001 * 120.00173 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47101 * 60.00462 * 9 7 2 26 26 H 1.08999 * 109.47250 * 300.01240 * 9 7 2 27 27 H 0.96998 * 119.99873 * 0.02562 * 10 9 7 28 28 H 1.08999 * 109.47248 * 30.00423 * 14 13 11 29 29 H 1.09004 * 109.46840 * 150.00330 * 14 13 11 30 30 H 1.08999 * 109.47401 * 185.00106 * 15 14 13 31 31 H 1.08999 * 109.47271 * 304.99828 * 15 14 13 32 32 H 1.08993 * 109.47006 * 299.99826 * 17 16 15 33 33 H 1.09000 * 109.47080 * 60.00049 * 17 16 15 34 34 H 1.09004 * 109.47021 * 184.99759 * 18 17 16 35 35 H 1.08999 * 109.47641 * 305.00255 * 18 17 16 36 36 H 0.96692 * 114.00152 * 179.97438 * 19 18 17 37 37 H 1.08998 * 112.85325 * 174.85109 * 20 13 11 38 38 H 1.08996 * 113.61610 * 334.57105 * 21 20 13 39 39 H 1.08995 * 113.61136 * 105.47285 * 21 20 13 40 40 H 1.09002 * 113.53429 * 270.81271 * 22 21 20 41 41 H 1.08995 * 113.66443 * 139.93605 * 22 21 20 42 42 H 1.09001 * 113.61860 * 254.52708 * 23 20 13 43 43 H 1.09004 * 113.61772 * 25.34853 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 5.3250 -2.8215 0.0001 12 8 6.1143 -1.9012 0.0916 13 7 5.7751 -4.0878 -0.1012 14 6 4.8305 -5.1854 -0.3233 15 6 4.3581 -5.7326 1.0251 16 8 3.6129 -4.7258 1.7130 17 6 3.1225 -5.1370 2.9908 18 6 2.3450 -3.9863 3.6329 19 8 1.1805 -3.7050 2.8538 20 6 7.2089 -4.3668 0.0108 21 6 7.8980 -3.6015 1.1530 22 6 9.0825 -3.3941 0.1916 23 6 8.0739 -3.5452 -0.9594 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6797 0.8895 26 1 3.8745 -0.6807 -0.8904 27 1 3.3696 -3.3125 0.0001 28 1 3.9729 -4.8182 -0.8870 29 1 5.3219 -5.9794 -0.8857 30 1 3.7255 -6.6050 0.8618 31 1 5.2227 -6.0179 1.6244 32 1 2.4641 -5.9968 2.8677 33 1 3.9612 -5.4102 3.6311 34 1 2.0469 -4.2682 4.6428 35 1 2.9771 -3.0993 3.6748 36 1 0.6382 -2.9847 3.2030 37 1 7.4347 -5.4331 0.0013 38 1 7.3909 -2.6763 1.4269 39 1 8.1374 -4.2251 2.0142 40 1 9.8214 -4.1944 0.2325 41 1 9.5282 -2.4015 0.2543 42 1 8.4554 -4.1234 -1.8010 43 1 7.6145 -2.6052 -1.2652 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854024780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:37 Heat of formation + Delta-G solvation = -118.060616 kcal Electronic energy + Delta-G solvation = -24589.241503 eV Core-core repulsion = 21055.998749 eV Total energy + Delta-G solvation = -3533.242754 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.58862 -39.11965 -38.68649 -37.31924 -35.94198 -35.61999 -34.07384 -31.17086 -29.81409 -29.20116 -26.45197 -25.92741 -24.18110 -23.49162 -23.32189 -21.15746 -20.72794 -18.95848 -18.52256 -18.04303 -17.98859 -17.32399 -16.74998 -16.38993 -16.16942 -16.11431 -15.60197 -15.30650 -15.10789 -14.67655 -14.49781 -14.26679 -13.98274 -13.91079 -13.58296 -13.25194 -12.96995 -12.90264 -12.81664 -12.60305 -12.46930 -12.01983 -11.90510 -11.84133 -11.53760 -11.32225 -11.27034 -10.88325 -10.84158 -10.54556 -10.46641 -9.83371 -9.25382 -8.31391 -6.35130 1.32348 1.34019 1.48414 1.91245 2.32229 2.35069 2.83341 3.02814 3.30747 3.46820 3.80701 3.86352 4.03084 4.05593 4.15078 4.17762 4.29622 4.33916 4.44709 4.52019 4.59310 4.65756 4.74468 4.79865 4.85631 4.87528 4.92292 5.00389 5.08919 5.11700 5.24460 5.29922 5.34495 5.51023 5.76843 5.99961 6.10589 6.34772 6.40370 6.67082 6.89948 7.24661 7.36679 7.86782 8.83489 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.012848 B = 0.006778 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.787588 B = 4130.139555 C = 5670.247763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.031 3.969 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.257 3.743 10 N -0.713 5.713 11 C 0.700 3.300 12 O -0.636 6.636 13 N -0.615 5.615 14 C 0.105 3.895 15 C 0.037 3.963 16 O -0.404 6.404 17 C 0.067 3.933 18 C 0.073 3.927 19 O -0.584 6.584 20 C 0.142 3.858 21 C -0.160 4.160 22 C -0.124 4.124 23 C -0.155 4.155 24 H 0.270 0.730 25 H -0.002 1.002 26 H 0.000 1.000 27 H 0.404 0.596 28 H 0.065 0.935 29 H 0.138 0.862 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.027 0.973 36 H 0.388 0.612 37 H 0.151 0.849 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.854 -16.296 4.631 21.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.169 4.169 3 Si 0.756 3.244 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.072 0.928 9 C 0.132 3.868 10 N -0.367 5.367 11 C 0.402 3.598 12 O -0.519 6.519 13 N -0.350 5.350 14 C -0.018 4.018 15 C -0.041 4.041 16 O -0.324 6.324 17 C -0.010 4.010 18 C -0.005 4.005 19 O -0.391 6.391 20 C 0.039 3.961 21 C -0.198 4.198 22 C -0.161 4.161 23 C -0.194 4.194 24 H 0.079 0.921 25 H 0.016 0.984 26 H 0.018 0.982 27 H 0.241 0.759 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.046 0.954 36 H 0.236 0.764 37 H 0.168 0.832 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.417 -15.836 4.237 21.184 hybrid contribution -0.711 1.206 0.543 1.502 sum 12.706 -14.630 4.780 19.958 Atomic orbital electron populations 1.69992 1.07353 1.28111 1.51398 1.25459 0.95453 1.01941 0.94025 0.85954 0.79165 0.79999 0.79248 1.19251 1.19614 1.19222 1.21158 0.89605 0.94245 1.51342 0.92767 1.18806 0.93291 0.80335 0.94332 1.45282 1.05066 1.09443 1.76951 1.16125 0.82535 0.83501 0.77675 1.90744 1.55818 1.45056 1.60330 1.47054 1.07708 1.04268 1.75991 1.21907 0.93116 0.90738 0.96030 1.23222 0.95705 0.91325 0.93829 1.88034 1.72037 1.40042 1.32244 1.22601 0.96886 0.96434 0.85053 1.22308 0.86699 0.97265 0.94200 1.86512 1.38311 1.58325 1.55905 1.22765 0.76460 1.00519 0.96343 1.23394 0.97655 1.01163 0.97631 1.22615 0.95911 1.02057 0.95559 1.23317 0.97493 1.00711 0.97830 0.92118 0.98366 0.98224 0.75853 0.91649 0.84383 0.90263 0.91582 0.91937 0.90201 0.89645 0.95431 0.76418 0.83168 0.91991 0.90503 0.87245 0.92928 0.89819 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.96 21.45 0.30 -56.54 16 2 C 0.03 1.82 5.47 84.65 0.46 2.28 16 3 Si 0.93 46.36 27.47 68.60 1.88 48.24 16 4 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -13.50 6.54 99.48 0.65 -12.85 16 7 C -0.53 -30.97 9.83 25.60 0.25 -30.72 16 8 H 0.05 3.45 7.84 -2.91 -0.02 3.43 16 9 C 0.26 13.96 4.50 85.63 0.39 14.34 16 10 N -0.71 -33.15 4.83 -482.30 -2.33 -35.48 16 11 C 0.70 29.76 7.37 179.05 1.32 31.08 16 12 O -0.64 -31.19 12.05 -3.98 -0.05 -31.24 16 13 N -0.62 -18.53 2.71 -812.78 -2.20 -20.73 16 14 C 0.10 2.36 5.70 86.38 0.49 2.86 16 15 C 0.04 0.77 6.28 71.98 0.45 1.23 16 16 O -0.40 -12.55 7.89 -144.34 -1.14 -13.69 16 17 C 0.07 1.69 6.32 71.98 0.45 2.14 16 18 C 0.07 2.12 7.43 71.98 0.53 2.65 16 19 O -0.58 -21.40 13.62 -144.34 -1.97 -23.36 16 20 C 0.14 3.39 4.39 45.52 0.20 3.59 16 21 C -0.16 -4.33 7.38 31.18 0.23 -4.10 16 22 C -0.12 -2.83 8.09 31.18 0.25 -2.57 16 23 C -0.15 -4.04 7.43 31.12 0.23 -3.81 16 24 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 25 H 0.00 -0.09 7.20 -2.39 -0.02 -0.11 16 26 H 0.00 0.00 7.57 -2.39 -0.02 -0.02 16 27 H 0.40 18.01 4.81 -92.71 -0.45 17.56 16 28 H 0.07 1.77 6.67 -2.39 -0.02 1.76 16 29 H 0.14 1.80 8.04 -2.39 -0.02 1.79 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.39 12.47 9.12 -74.06 -0.68 11.79 16 37 H 0.15 2.15 8.04 -2.39 -0.02 2.13 16 38 H 0.06 2.35 5.71 -2.39 -0.01 2.34 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.06 2.05 6.22 -2.38 -0.01 2.04 16 Total: -1.00 -78.81 344.42 -0.40 -79.21 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: -0.16 Total: 34.63 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 5.27 Total: 18.97 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -4.23 Total: -112.75 kcal Atomic # 8 Polarization: -65.14 SS G_CDS: -3.15 Total: -68.29 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.88 Total: 48.24 kcal Total: -78.81 -0.40 -79.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854024780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.853 kcal (2) G-P(sol) polarization free energy of solvation -78.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds