Wall clock time and date at job start Tue Mar 31 2020 03:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00243 * 2 1 4 4 C 1.53002 * 109.47143 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46763 * 65.00339 * 4 3 2 6 6 C 1.46501 * 119.99596 * 269.99463 * 5 4 3 7 7 C 1.50702 * 109.47201 * 270.00190 * 6 5 4 8 8 H 1.08000 * 120.00237 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99949 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00013 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99921 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46685 * 90.00672 * 11 9 7 13 13 H 1.48500 * 109.47101 * 210.00475 * 11 9 7 14 14 H 1.48499 * 109.46966 * 330.00905 * 11 9 7 15 15 C 1.34770 * 120.00158 * 90.00506 * 5 4 3 16 16 O 1.21282 * 120.00373 * 179.97438 * 15 5 4 17 17 C 1.50703 * 120.00146 * 359.97438 * 15 5 4 18 18 N 1.46499 * 109.46938 * 180.02562 * 17 15 5 19 19 C 1.47093 * 125.55889 * 90.00705 * 18 17 15 20 20 C 1.54091 * 103.77776 * 180.02562 * 19 18 17 21 21 O 1.45704 * 104.12991 * 359.92869 * 20 19 18 22 22 C 1.34001 * 125.56070 * 270.01771 * 18 17 15 23 23 O 1.21513 * 123.07229 * 0.03827 * 22 18 17 24 24 H 1.08998 * 109.47493 * 59.99867 * 1 2 3 25 25 H 1.09000 * 109.47378 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47144 * 299.99781 * 1 2 3 27 27 H 1.09002 * 109.46690 * 60.00244 * 3 2 1 28 28 H 1.09004 * 109.46933 * 300.00370 * 3 2 1 29 29 H 1.08998 * 109.47087 * 304.99771 * 4 3 2 30 30 H 1.09002 * 109.46753 * 184.99785 * 4 3 2 31 31 H 1.08995 * 109.47329 * 30.00905 * 6 5 4 32 32 H 1.09004 * 109.46925 * 150.00908 * 6 5 4 33 33 H 0.96997 * 120.00145 * 179.97438 * 10 9 7 34 34 H 1.09004 * 109.46863 * 60.00532 * 17 15 5 35 35 H 1.08996 * 109.46918 * 300.00602 * 17 15 5 36 36 H 1.09000 * 110.56724 * 61.43908 * 19 18 17 37 37 H 1.09004 * 110.68940 * 298.64853 * 19 18 17 38 38 H 1.09002 * 110.52360 * 118.62859 * 20 19 18 39 39 H 1.09002 * 110.51975 * 241.22721 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1051 -0.8921 -1.3428 7 6 5.5009 -1.2979 -0.9450 8 1 6.2195 -0.5461 -0.6539 9 6 5.8602 -2.6290 -0.9518 10 7 4.9850 -3.5445 -1.3059 11 14 7.5906 -3.1319 -0.4594 12 1 7.6354 -3.3837 1.0034 13 1 7.9723 -4.3691 -1.1866 14 1 8.5394 -2.0426 -0.8036 15 6 4.2615 1.3337 -2.3218 16 8 4.6263 0.8204 -3.3583 17 6 4.1279 2.8320 -2.2293 18 7 4.4931 3.4349 -3.5135 19 6 3.5681 3.7080 -4.6241 20 6 4.4687 4.3341 -5.7063 21 8 5.7937 4.3510 -5.1004 22 6 5.7242 3.8275 -3.8681 23 8 6.6904 3.7193 -3.1392 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8514 0.5682 0.8409 30 1 3.9785 2.1764 0.0889 31 1 3.3851 -1.3630 -0.6735 32 1 3.9119 -1.2114 -2.3670 33 1 5.2378 -4.4810 -1.3110 34 1 4.7900 3.2083 -1.4494 35 1 3.0972 3.0905 -1.9868 36 1 2.7953 4.4117 -4.3147 37 1 3.1192 2.7835 -4.9876 38 1 4.4681 3.7195 -6.6066 39 1 4.1409 5.3478 -5.9367 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874347907.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:12 Heat of formation + Delta-G solvation = -133.078334 kcal Electronic energy + Delta-G solvation = -23702.290795 eV Core-core repulsion = 20032.563730 eV Total energy + Delta-G solvation = -3669.727065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.43953 -39.15464 -37.57824 -36.98769 -35.35574 -34.75092 -32.65230 -30.41166 -29.63080 -28.35736 -26.55132 -25.93613 -23.72030 -22.88693 -22.74317 -21.09415 -18.70946 -17.53373 -17.20056 -16.80422 -16.61699 -16.39874 -16.04832 -15.57009 -15.08606 -14.96139 -14.67578 -14.20309 -14.07670 -13.92598 -13.65174 -13.34286 -12.84738 -12.59421 -12.34715 -12.08884 -11.90697 -11.76053 -11.61439 -11.23001 -10.89440 -10.81707 -10.67182 -10.48551 -10.39994 -10.08226 -9.62044 -9.51720 -9.47520 -8.55433 -8.32855 -7.66162 -5.94690 -3.98340 2.37954 2.89957 3.28089 3.37582 3.43837 3.47432 3.51271 3.90413 3.99197 4.09695 4.52886 4.55332 4.63940 4.89528 5.07888 5.09087 5.21839 5.24421 5.35825 5.40091 5.42819 5.43073 5.47470 5.52782 5.58029 5.74973 5.80218 6.17191 6.30019 7.20015 7.33888 7.39180 7.53489 7.63224 8.02534 8.13269 8.34155 8.41895 8.93433 9.09807 9.65785 11.13403 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.006077 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.237659 B = 4606.346488 C = 6265.747143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.044 3.956 4 C 0.107 3.893 5 N -0.586 5.586 6 C 0.251 3.749 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.484 3.516 16 O -0.529 6.529 17 C 0.126 3.874 18 N -0.612 5.612 19 C 0.068 3.932 20 C 0.044 3.956 21 O -0.329 6.329 22 C 0.649 3.351 23 O -0.516 6.516 24 H 0.035 0.965 25 H 0.084 0.916 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.038 0.962 33 H 0.262 0.738 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.972 16.703 -1.639 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.034 4.034 4 C -0.018 4.018 5 N -0.318 5.318 6 C 0.132 3.868 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.268 3.732 16 O -0.406 6.406 17 C 0.001 3.999 18 N -0.359 5.359 19 C -0.056 4.056 20 C -0.032 4.032 21 O -0.240 6.240 22 C 0.402 3.598 23 O -0.400 6.400 24 H 0.054 0.946 25 H 0.103 0.897 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.968 16.069 -1.958 19.554 hybrid contribution 0.421 -0.238 0.291 0.565 sum -10.547 15.831 -1.667 19.095 Atomic orbital electron populations 1.22705 0.81983 1.02689 0.99081 1.88123 1.18754 1.26799 1.95113 1.23120 0.95249 0.85575 0.99463 1.21582 0.91202 0.99127 0.89857 1.48196 1.64060 1.10013 1.09540 1.19322 0.96831 0.71788 0.98821 1.21485 0.97471 0.92273 1.45218 0.92564 1.24901 0.97371 0.96402 0.95339 1.69942 1.34351 1.00936 1.48189 0.86541 0.84797 0.78081 0.78308 1.20656 1.21169 1.19857 1.20720 0.79134 0.88584 0.84763 1.90685 1.45894 1.74455 1.29517 1.21304 1.02627 0.92416 0.83520 1.47414 1.08260 1.63526 1.16700 1.22790 0.93612 1.02316 0.86842 1.24224 0.78950 1.03207 0.96782 1.87355 1.31586 1.76934 1.28084 1.18425 0.83814 0.76663 0.80866 1.91056 1.37879 1.59400 1.51667 0.94638 0.89720 0.94625 0.92830 0.93943 0.88557 0.90035 0.93486 0.94384 0.92882 0.86950 0.87700 0.89183 0.88716 0.87700 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -5.95 9.53 -35.23 -0.34 -6.29 16 3 C 0.04 0.56 6.28 37.16 0.23 0.79 16 4 C 0.11 1.64 5.62 -4.04 -0.02 1.61 16 5 N -0.59 -12.27 2.42 -175.06 -0.42 -12.69 16 6 C 0.25 6.71 4.98 -5.19 -0.03 6.69 16 7 C -0.53 -15.47 9.39 -34.44 -0.32 -15.79 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -27.40 13.29 55.43 0.74 -26.67 16 11 Si 0.89 22.86 29.54 -169.99 -5.02 17.84 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 15 C 0.48 9.97 7.74 -10.99 -0.09 9.89 16 16 O -0.53 -13.53 16.01 5.56 0.09 -13.44 16 17 C 0.13 1.82 5.05 -5.19 -0.03 1.79 16 18 N -0.61 -8.98 2.45 -180.13 -0.44 -9.42 16 19 C 0.07 0.64 7.70 -3.15 -0.02 0.62 16 20 C 0.04 0.38 8.22 37.73 0.31 0.69 16 21 O -0.33 -4.94 11.11 -38.59 -0.43 -5.37 16 22 C 0.65 11.62 8.85 53.71 0.48 12.10 16 23 O -0.52 -11.51 17.55 -19.10 -0.34 -11.84 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.47 7.30 -51.93 -0.38 0.10 16 29 H 0.10 1.61 8.07 -51.93 -0.42 1.19 16 30 H 0.08 0.95 6.44 -51.93 -0.33 0.61 16 31 H 0.05 1.30 7.11 -51.93 -0.37 0.93 16 32 H 0.04 1.16 7.42 -51.93 -0.39 0.77 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.11 1.55 7.19 -51.93 -0.37 1.18 16 35 H 0.11 1.03 7.26 -51.93 -0.38 0.65 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -40.62 335.54 -5.14 -45.76 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -5.56 Total: -4.54 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 1.53 Total: 21.60 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: -0.13 Total: -48.78 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.01 Total: -36.94 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -40.62 -5.14 -45.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874347907.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.314 kcal (2) G-P(sol) polarization free energy of solvation -40.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds