Wall clock time and date at job start Tue Mar 31 2020 03:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00243 * 2 1 4 4 C 1.53002 * 109.47143 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46763 * 65.00339 * 4 3 2 6 6 C 1.46501 * 119.99596 * 269.99463 * 5 4 3 7 7 C 1.50702 * 109.47201 * 270.00190 * 6 5 4 8 8 H 1.08000 * 120.00237 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99949 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00013 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99921 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46685 * 90.00672 * 11 9 7 13 13 H 1.48500 * 109.47101 * 210.00475 * 11 9 7 14 14 H 1.48499 * 109.46966 * 330.00905 * 11 9 7 15 15 C 1.34770 * 120.00158 * 90.00506 * 5 4 3 16 16 O 1.21282 * 120.00373 * 179.97438 * 15 5 4 17 17 C 1.50703 * 120.00146 * 359.97438 * 15 5 4 18 18 N 1.46499 * 109.46938 * 180.02562 * 17 15 5 19 19 C 1.47093 * 125.55889 * 90.00705 * 18 17 15 20 20 C 1.54091 * 103.77776 * 180.02562 * 19 18 17 21 21 O 1.45704 * 104.12991 * 359.92869 * 20 19 18 22 22 C 1.34001 * 125.56070 * 270.01771 * 18 17 15 23 23 O 1.21513 * 123.07229 * 0.03827 * 22 18 17 24 24 H 1.08998 * 109.47493 * 59.99867 * 1 2 3 25 25 H 1.09000 * 109.47378 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47144 * 299.99781 * 1 2 3 27 27 H 1.09002 * 109.46690 * 60.00244 * 3 2 1 28 28 H 1.09004 * 109.46933 * 300.00370 * 3 2 1 29 29 H 1.08998 * 109.47087 * 304.99771 * 4 3 2 30 30 H 1.09002 * 109.46753 * 184.99785 * 4 3 2 31 31 H 1.08995 * 109.47329 * 30.00905 * 6 5 4 32 32 H 1.09004 * 109.46925 * 150.00908 * 6 5 4 33 33 H 0.96997 * 120.00145 * 179.97438 * 10 9 7 34 34 H 1.09004 * 109.46863 * 60.00532 * 17 15 5 35 35 H 1.08996 * 109.46918 * 300.00602 * 17 15 5 36 36 H 1.09000 * 110.56724 * 61.43908 * 19 18 17 37 37 H 1.09004 * 110.68940 * 298.64853 * 19 18 17 38 38 H 1.09002 * 110.52360 * 118.62859 * 20 19 18 39 39 H 1.09002 * 110.51975 * 241.22721 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1051 -0.8921 -1.3428 7 6 5.5009 -1.2979 -0.9450 8 1 6.2195 -0.5461 -0.6539 9 6 5.8602 -2.6290 -0.9518 10 7 4.9850 -3.5445 -1.3059 11 14 7.5906 -3.1319 -0.4594 12 1 7.6354 -3.3837 1.0034 13 1 7.9723 -4.3691 -1.1866 14 1 8.5394 -2.0426 -0.8036 15 6 4.2615 1.3337 -2.3218 16 8 4.6263 0.8204 -3.3583 17 6 4.1279 2.8320 -2.2293 18 7 4.4931 3.4349 -3.5135 19 6 3.5681 3.7080 -4.6241 20 6 4.4687 4.3341 -5.7063 21 8 5.7937 4.3510 -5.1004 22 6 5.7242 3.8275 -3.8681 23 8 6.6904 3.7193 -3.1392 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8514 0.5682 0.8409 30 1 3.9785 2.1764 0.0889 31 1 3.3851 -1.3630 -0.6735 32 1 3.9119 -1.2114 -2.3670 33 1 5.2378 -4.4810 -1.3110 34 1 4.7900 3.2083 -1.4494 35 1 3.0972 3.0905 -1.9868 36 1 2.7953 4.4117 -4.3147 37 1 3.1192 2.7835 -4.9876 38 1 4.4681 3.7195 -6.6066 39 1 4.1409 5.3478 -5.9367 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874347907.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:12 Heat of formation + Delta-G solvation = -165.340711 kcal Electronic energy + Delta-G solvation = -23703.689797 eV Core-core repulsion = 20032.563730 eV Total energy + Delta-G solvation = -3671.126067 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.56342 -40.69424 -38.72119 -38.33256 -36.70907 -36.22997 -34.81167 -31.59070 -30.94379 -29.68042 -28.19222 -27.04438 -24.92675 -24.52018 -23.92581 -22.41720 -20.19176 -18.77013 -18.59007 -18.40726 -17.87728 -17.76985 -17.28387 -16.91932 -16.65280 -16.25515 -15.93951 -15.84082 -15.29942 -15.04071 -14.82128 -14.66078 -14.37634 -13.88028 -13.54944 -13.44009 -13.20609 -13.06733 -13.00675 -12.80367 -12.68819 -12.55490 -12.21424 -11.91047 -11.86279 -11.70357 -11.69027 -11.00606 -10.63488 -10.47467 -9.88641 -9.43310 -8.22117 -6.36029 1.23621 1.32281 1.35702 1.46320 1.63611 1.75036 2.30664 2.43514 2.63852 3.01766 3.07866 3.37096 3.57190 3.66667 4.00245 4.13172 4.20879 4.35748 4.37682 4.47852 4.49601 4.55345 4.59479 4.67087 4.76201 4.82611 4.92255 4.98520 5.13318 5.26998 5.27737 5.56422 5.85971 6.09066 6.27301 6.41021 6.70578 6.78041 6.88852 7.27609 7.44292 8.84692 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.006077 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.237659 B = 4606.346488 C = 6265.747143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.420 6.420 3 C 0.045 3.955 4 C 0.098 3.902 5 N -0.592 5.592 6 C 0.274 3.726 7 C -0.545 4.545 8 H 0.046 0.954 9 C 0.009 3.991 10 N -0.926 5.926 11 Si 0.962 3.038 12 H -0.259 1.259 13 H -0.278 1.278 14 H -0.280 1.280 15 C 0.472 3.528 16 O -0.593 6.593 17 C 0.138 3.862 18 N -0.611 5.611 19 C 0.063 3.937 20 C 0.037 3.963 21 O -0.348 6.348 22 C 0.640 3.360 23 O -0.578 6.578 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.033 0.967 32 H -0.012 1.012 33 H 0.266 0.734 34 H 0.123 0.877 35 H 0.166 0.834 36 H 0.144 0.856 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.538 19.282 -0.981 23.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.340 6.340 3 C -0.032 4.032 4 C -0.025 4.025 5 N -0.322 5.322 6 C 0.153 3.847 7 C -0.584 4.584 8 H 0.064 0.936 9 C -0.190 4.190 10 N -0.566 5.566 11 Si 0.786 3.214 12 H -0.184 1.184 13 H -0.203 1.203 14 H -0.206 1.206 15 C 0.260 3.740 16 O -0.474 6.474 17 C 0.013 3.987 18 N -0.357 5.357 19 C -0.058 4.058 20 C -0.036 4.036 21 O -0.258 6.258 22 C 0.394 3.606 23 O -0.466 6.466 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.113 0.887 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.144 0.856 31 H 0.051 0.949 32 H 0.006 0.994 33 H 0.075 0.925 34 H 0.140 0.860 35 H 0.183 0.817 36 H 0.161 0.839 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.612 18.694 -1.291 22.588 hybrid contribution 0.808 -1.037 0.010 1.315 sum -11.804 17.657 -1.281 21.278 Atomic orbital electron populations 1.22840 0.79990 1.02909 1.00977 1.88059 1.21174 1.29201 1.95562 1.23213 0.92637 0.84870 1.02441 1.21999 0.93918 1.00276 0.86281 1.48154 1.64136 1.07902 1.12044 1.18605 0.95130 0.75914 0.95077 1.21768 0.98555 0.92531 1.45518 0.93612 1.25794 1.01601 0.96427 0.95149 1.70053 1.36361 1.01372 1.48781 0.85507 0.79305 0.77449 0.79098 1.18418 1.20323 1.20559 1.21927 0.77358 0.91326 0.83427 1.90648 1.48627 1.76257 1.31904 1.21425 1.06277 0.86949 0.84034 1.47610 1.08232 1.61971 1.17841 1.23221 0.93788 1.03379 0.85430 1.24781 0.76052 1.06327 0.96450 1.87305 1.35210 1.76326 1.26942 1.18748 0.84065 0.76509 0.81253 1.90986 1.39999 1.61931 1.53702 0.93309 0.90577 0.91967 0.88652 0.91750 0.90691 0.85627 0.94946 0.99379 0.92471 0.85971 0.81654 0.83869 0.89557 0.86696 0.83173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.42 -13.14 9.53 -148.98 -1.42 -14.56 16 3 C 0.05 1.01 6.28 71.98 0.45 1.46 16 4 C 0.10 2.83 5.62 86.38 0.49 3.31 16 5 N -0.59 -25.09 2.42 -826.15 -2.00 -27.09 16 6 C 0.27 15.44 4.98 85.63 0.43 15.86 16 7 C -0.55 -33.40 9.39 25.60 0.24 -33.16 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.01 0.56 5.46 84.66 0.46 1.02 16 10 N -0.93 -58.50 13.29 21.45 0.28 -58.21 16 11 Si 0.96 47.87 29.54 68.60 2.03 49.90 16 12 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 13 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 14 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 15 C 0.47 19.54 7.74 87.66 0.68 20.22 16 16 O -0.59 -31.64 16.01 -3.04 -0.05 -31.69 16 17 C 0.14 3.59 5.05 85.63 0.43 4.02 16 18 N -0.61 -16.65 2.45 -955.37 -2.34 -18.99 16 19 C 0.06 0.98 7.70 86.64 0.67 1.64 16 20 C 0.04 0.54 8.22 72.35 0.59 1.13 16 21 O -0.35 -10.11 11.11 -50.08 -0.56 -10.67 16 22 C 0.64 22.74 8.85 129.91 1.15 23.89 16 23 O -0.58 -26.45 17.55 19.63 0.34 -26.10 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.14 7.30 -2.38 -0.02 1.12 16 29 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 30 H 0.13 2.48 6.44 -2.39 -0.02 2.46 16 31 H 0.03 1.90 7.11 -2.39 -0.02 1.88 16 32 H -0.01 -0.78 7.42 -2.38 -0.02 -0.80 16 33 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 34 H 0.12 3.03 7.19 -2.38 -0.02 3.01 16 35 H 0.17 2.29 7.26 -2.39 -0.02 2.27 16 36 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -98.33 335.54 4.18 -94.15 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: 1.05 Total: 2.00 kcal Atomic # 6 Polarization: 34.43 SS G_CDS: 6.84 Total: 41.27 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -4.05 Total: -104.29 kcal Atomic # 8 Polarization: -81.35 SS G_CDS: -1.68 Total: -83.02 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -98.33 4.18 -94.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874347907.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.191 kcal (2) G-P(sol) polarization free energy of solvation -98.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds