Wall clock time and date at job start Tue Mar 31 2020 03:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46704 * 2 1 4 4 C 1.50694 * 109.47020 * 119.99694 * 2 1 3 5 5 H 1.08002 * 120.00324 * 123.19845 * 4 2 1 6 6 C 1.37882 * 120.00413 * 303.20094 * 4 2 1 7 7 N 1.31515 * 119.99447 * 4.33192 * 6 4 2 8 8 Si 1.86794 * 120.00038 * 184.32962 * 6 4 2 9 9 H 1.48504 * 109.46945 * 85.00320 * 8 6 4 10 10 H 1.48498 * 109.47494 * 325.00306 * 8 6 4 11 11 H 1.48498 * 109.47114 * 204.99804 * 8 6 4 12 12 C 1.52998 * 109.47119 * 240.00029 * 2 1 3 13 13 N 1.46499 * 109.47334 * 60.00227 * 12 2 1 14 14 C 1.34775 * 120.00278 * 180.02562 * 13 12 2 15 15 O 1.21586 * 119.99867 * 5.15342 * 14 13 12 16 16 N 1.34777 * 120.00334 * 185.15880 * 14 13 12 17 17 C 1.47157 * 120.97782 * 5.68348 * 16 14 13 18 18 C 1.53295 * 108.38117 * 129.44190 * 17 16 14 19 19 O 1.42965 * 109.22504 * 52.30310 * 18 17 16 20 20 C 1.42966 * 114.16134 * 297.41966 * 19 18 17 21 21 C 1.47148 * 120.98223 * 185.40257 * 16 14 13 22 22 H 1.08997 * 109.68546 * 110.83703 * 21 16 14 23 23 C 1.53000 * 109.68473 * 350.27885 * 21 16 14 24 24 O 1.42905 * 109.47136 * 296.38460 * 23 21 16 25 25 H 1.09000 * 109.47635 * 299.99911 * 1 2 3 26 26 H 1.09001 * 109.47040 * 60.00114 * 1 2 3 27 27 H 1.09005 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46633 * 175.01359 * 3 2 1 29 29 H 1.08993 * 109.47260 * 295.01397 * 3 2 1 30 30 H 1.08995 * 109.47135 * 55.01939 * 3 2 1 31 31 H 0.97001 * 119.99282 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46755 * 179.97438 * 12 2 1 33 33 H 1.08998 * 109.47336 * 299.99545 * 12 2 1 34 34 H 0.97006 * 119.99929 * 359.97438 * 13 12 2 35 35 H 1.08996 * 109.68172 * 249.16392 * 17 16 14 36 36 H 1.08995 * 109.68205 * 9.68094 * 17 16 14 37 37 H 1.09000 * 109.50884 * 172.22190 * 18 17 16 38 38 H 1.08995 * 109.51338 * 292.37395 * 18 17 16 39 39 H 1.09010 * 109.50869 * 182.50362 * 20 19 18 40 40 H 1.09001 * 109.51201 * 302.59747 * 20 19 18 41 41 H 1.09003 * 109.46780 * 56.37534 * 23 21 16 42 42 H 1.08995 * 109.47207 * 176.38320 * 23 21 16 43 43 H 0.96694 * 114.00129 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6951 -1.5573 1.1323 6 6 1.6457 -0.2790 2.4817 7 7 0.7724 0.6973 2.5998 8 14 2.3622 -1.0813 4.0089 9 1 3.6582 -0.4383 4.3440 10 1 2.5789 -2.5278 3.7528 11 1 1.4192 -0.9153 5.1439 12 6 2.0400 -0.7212 -1.2492 13 7 1.5518 -0.0306 -2.4454 14 6 1.8769 -0.4914 -3.6695 15 8 2.4960 -1.5316 -3.7828 16 7 1.5159 0.2010 -4.7680 17 6 0.8766 1.5216 -4.6549 18 6 1.6292 2.5023 -5.5615 19 8 1.7200 1.9516 -6.8777 20 6 2.4598 0.7304 -6.9513 21 6 1.7550 -0.3385 -6.1160 22 1 0.8041 -0.5967 -6.5821 23 6 2.6391 -1.5838 -6.0234 24 8 3.9190 -1.2214 -5.5012 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1263 1.4438 0.0893 29 1 1.7513 1.9299 -0.9312 30 1 1.6056 1.9814 0.8420 31 1 0.5002 1.0004 3.4801 32 1 3.1300 -0.7208 -1.2494 33 1 1.6768 -1.7489 -1.2492 34 1 0.9938 0.7579 -2.3564 35 1 -0.1642 1.4540 -4.9713 36 1 0.9245 1.8653 -3.6216 37 1 1.0908 3.4493 -5.5995 38 1 2.6313 2.6679 -5.1661 39 1 2.5191 0.4027 -7.9893 40 1 3.4653 0.8899 -6.5619 41 1 2.1707 -2.3136 -5.3630 42 1 2.7611 -2.0174 -7.0159 43 1 4.5329 -1.9635 -5.4145 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922836863.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:50 Heat of formation + Delta-G solvation = -97.750904 kcal Electronic energy + Delta-G solvation = -24595.770553 eV Core-core repulsion = 21063.408494 eV Total energy + Delta-G solvation = -3532.362058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.57357 -38.38495 -36.85266 -35.92708 -34.51845 -33.25599 -31.83435 -30.65367 -28.16587 -25.91951 -25.72144 -25.55647 -24.72408 -22.89775 -21.79477 -19.53170 -18.76699 -17.81578 -17.35137 -16.55456 -15.89458 -15.61991 -15.48032 -15.18279 -14.93845 -14.75716 -14.44396 -13.84184 -13.62518 -13.27498 -13.03057 -12.85909 -12.58611 -12.16403 -12.07575 -11.56867 -11.42954 -11.26831 -11.13548 -10.86545 -10.79288 -10.70196 -10.38663 -10.22956 -10.13868 -9.91218 -9.60387 -9.32635 -8.94840 -8.77660 -8.41813 -8.34523 -8.08301 -6.00341 -4.11077 2.81889 3.29189 3.35610 3.39409 3.66751 3.67848 4.22532 4.40621 4.57097 4.64677 4.88287 4.97683 5.00860 5.15571 5.25014 5.30807 5.44924 5.45695 5.62969 5.66840 5.96373 6.03915 6.21801 6.38839 6.50898 6.58627 6.80906 6.83096 6.93180 6.95751 7.04314 7.15673 7.27530 7.40100 7.56460 7.70356 7.95497 7.97668 8.17598 8.40300 8.46340 8.88840 9.10510 9.54743 10.99771 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.028725 B = 0.004189 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.511780 B = 6683.058780 C = 7266.674360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.055 3.945 3 C -0.124 4.124 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.288 1.288 12 C 0.152 3.848 13 N -0.735 5.735 14 C 0.707 3.293 15 O -0.575 6.575 16 N -0.633 5.633 17 C 0.077 3.923 18 C 0.049 3.951 19 O -0.384 6.384 20 C 0.052 3.948 21 C 0.134 3.866 22 H 0.083 0.917 23 C 0.084 3.916 24 O -0.554 6.554 25 H 0.096 0.904 26 H 0.001 0.999 27 H 0.025 0.975 28 H 0.030 0.970 29 H 0.006 0.994 30 H 0.073 0.927 31 H 0.259 0.741 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.391 0.609 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.028 0.972 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 1.960 -16.729 16.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 C -0.182 4.182 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.213 1.213 12 C 0.029 3.971 13 N -0.392 5.392 14 C 0.409 3.591 15 O -0.454 6.454 16 N -0.373 5.373 17 C -0.047 4.047 18 C -0.028 4.028 19 O -0.302 6.302 20 C -0.025 4.025 21 C 0.030 3.970 22 H 0.101 0.899 23 C 0.006 3.994 24 O -0.359 6.359 25 H 0.115 0.885 26 H 0.020 0.980 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.025 0.975 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.227 0.773 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.046 0.954 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.111 1.965 -16.758 16.873 hybrid contribution 0.369 -0.610 1.131 1.337 sum 0.480 1.355 -15.627 15.693 Atomic orbital electron populations 1.21917 0.97542 0.99319 1.00340 1.18369 0.93052 0.92471 0.90657 1.21763 0.99212 0.98584 0.98650 1.20966 1.28724 1.14750 0.89910 0.92454 1.24878 0.94668 0.95069 0.98848 1.69787 1.31307 1.28138 1.23216 0.86585 0.78917 0.79851 0.82496 1.20645 1.19976 1.21339 1.21532 0.97629 0.95463 0.82425 1.45713 1.55549 1.33253 1.04647 1.15876 0.79499 0.83415 0.80281 1.90766 1.45737 1.24449 1.84445 1.47197 1.65820 1.19505 1.04816 1.22290 0.97310 0.83703 1.01390 1.22952 1.00490 0.96178 0.83227 1.87916 1.75148 1.39064 1.28061 1.22937 0.95422 0.83928 1.00226 1.21709 0.98353 0.94391 0.82591 0.89909 1.22276 0.85700 0.95796 0.95669 1.86423 1.23919 1.37760 1.87754 0.88538 0.98016 0.95612 0.95127 0.97533 0.90854 0.93037 0.93172 0.92998 0.77284 0.90827 0.89171 0.87766 0.92439 0.88272 0.91366 0.89594 0.95379 0.78102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.04 37.16 0.30 -2.76 16 2 C 0.06 1.29 0.51 -155.66 -0.08 1.21 16 3 C -0.12 -2.78 8.12 37.16 0.30 -2.48 16 4 C -0.50 -13.24 8.01 -34.44 -0.28 -13.52 16 5 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.56 9.44 55.43 0.52 -23.04 16 8 Si 0.89 20.73 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.15 3.29 4.51 -4.04 -0.02 3.28 16 13 N -0.74 -13.59 4.77 -65.23 -0.31 -13.90 16 14 C 0.71 12.86 8.01 -86.92 -0.70 12.16 16 15 O -0.58 -11.64 10.92 -19.13 -0.21 -11.85 16 16 N -0.63 -9.26 3.02 -170.68 -0.51 -9.77 16 17 C 0.08 0.91 6.52 -3.53 -0.02 0.89 16 18 C 0.05 0.53 6.98 37.31 0.26 0.79 16 19 O -0.38 -4.65 10.74 -35.23 -0.38 -5.03 16 20 C 0.05 0.61 6.19 37.09 0.23 0.84 16 21 C 0.13 1.70 3.46 -67.64 -0.23 1.47 16 22 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 23 C 0.08 1.09 5.80 37.16 0.22 1.31 16 24 O -0.55 -8.12 10.45 -59.65 -0.62 -8.74 16 25 H 0.10 2.44 5.67 -51.93 -0.29 2.14 16 26 H 0.00 0.02 6.86 -51.93 -0.36 -0.34 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.01 0.11 6.74 -51.93 -0.35 -0.24 16 30 H 0.07 1.79 6.63 -51.93 -0.34 1.45 16 31 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.39 6.63 3.84 -40.82 -0.16 6.47 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.05 5.90 -51.93 -0.31 0.75 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 40 H 0.07 0.90 7.32 -51.93 -0.38 0.52 16 41 H 0.09 1.34 5.97 -52.01 -0.31 1.03 16 42 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.37 4.34 9.12 45.56 0.42 4.76 16 LS Contribution 327.01 15.07 4.93 4.93 Total: -1.00 -29.82 327.01 -7.57 -37.39 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -5.85 Total: 9.48 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.11 Total: 4.83 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.30 Total: -46.72 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -1.21 Total: -25.61 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.82 -7.57 -37.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922836863.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.364 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds