Wall clock time and date at job start Tue Mar 31 2020 03:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46704 * 2 1 4 4 C 1.50694 * 109.47020 * 119.99694 * 2 1 3 5 5 H 1.08002 * 120.00324 * 123.19845 * 4 2 1 6 6 C 1.37882 * 120.00413 * 303.20094 * 4 2 1 7 7 N 1.31515 * 119.99447 * 4.33192 * 6 4 2 8 8 Si 1.86794 * 120.00038 * 184.32962 * 6 4 2 9 9 H 1.48504 * 109.46945 * 85.00320 * 8 6 4 10 10 H 1.48498 * 109.47494 * 325.00306 * 8 6 4 11 11 H 1.48498 * 109.47114 * 204.99804 * 8 6 4 12 12 C 1.52998 * 109.47119 * 240.00029 * 2 1 3 13 13 N 1.46499 * 109.47334 * 60.00227 * 12 2 1 14 14 C 1.34775 * 120.00278 * 180.02562 * 13 12 2 15 15 O 1.21586 * 119.99867 * 5.15342 * 14 13 12 16 16 N 1.34777 * 120.00334 * 185.15880 * 14 13 12 17 17 C 1.47157 * 120.97782 * 5.68348 * 16 14 13 18 18 C 1.53295 * 108.38117 * 129.44190 * 17 16 14 19 19 O 1.42965 * 109.22504 * 52.30310 * 18 17 16 20 20 C 1.42966 * 114.16134 * 297.41966 * 19 18 17 21 21 C 1.47148 * 120.98223 * 185.40257 * 16 14 13 22 22 H 1.08997 * 109.68546 * 110.83703 * 21 16 14 23 23 C 1.53000 * 109.68473 * 350.27885 * 21 16 14 24 24 O 1.42905 * 109.47136 * 296.38460 * 23 21 16 25 25 H 1.09000 * 109.47635 * 299.99911 * 1 2 3 26 26 H 1.09001 * 109.47040 * 60.00114 * 1 2 3 27 27 H 1.09005 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46633 * 175.01359 * 3 2 1 29 29 H 1.08993 * 109.47260 * 295.01397 * 3 2 1 30 30 H 1.08995 * 109.47135 * 55.01939 * 3 2 1 31 31 H 0.97001 * 119.99282 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46755 * 179.97438 * 12 2 1 33 33 H 1.08998 * 109.47336 * 299.99545 * 12 2 1 34 34 H 0.97006 * 119.99929 * 359.97438 * 13 12 2 35 35 H 1.08996 * 109.68172 * 249.16392 * 17 16 14 36 36 H 1.08995 * 109.68205 * 9.68094 * 17 16 14 37 37 H 1.09000 * 109.50884 * 172.22190 * 18 17 16 38 38 H 1.08995 * 109.51338 * 292.37395 * 18 17 16 39 39 H 1.09010 * 109.50869 * 182.50362 * 20 19 18 40 40 H 1.09001 * 109.51201 * 302.59747 * 20 19 18 41 41 H 1.09003 * 109.46780 * 56.37534 * 23 21 16 42 42 H 1.08995 * 109.47207 * 176.38320 * 23 21 16 43 43 H 0.96694 * 114.00129 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6951 -1.5573 1.1323 6 6 1.6457 -0.2790 2.4817 7 7 0.7724 0.6973 2.5998 8 14 2.3622 -1.0813 4.0089 9 1 3.6582 -0.4383 4.3440 10 1 2.5789 -2.5278 3.7528 11 1 1.4192 -0.9153 5.1439 12 6 2.0400 -0.7212 -1.2492 13 7 1.5518 -0.0306 -2.4454 14 6 1.8769 -0.4914 -3.6695 15 8 2.4960 -1.5316 -3.7828 16 7 1.5159 0.2010 -4.7680 17 6 0.8766 1.5216 -4.6549 18 6 1.6292 2.5023 -5.5615 19 8 1.7200 1.9516 -6.8777 20 6 2.4598 0.7304 -6.9513 21 6 1.7550 -0.3385 -6.1160 22 1 0.8041 -0.5967 -6.5821 23 6 2.6391 -1.5838 -6.0234 24 8 3.9190 -1.2214 -5.5012 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1263 1.4438 0.0893 29 1 1.7513 1.9299 -0.9312 30 1 1.6056 1.9814 0.8420 31 1 0.5002 1.0004 3.4801 32 1 3.1300 -0.7208 -1.2494 33 1 1.6768 -1.7489 -1.2492 34 1 0.9938 0.7579 -2.3564 35 1 -0.1642 1.4540 -4.9713 36 1 0.9245 1.8653 -3.6216 37 1 1.0908 3.4493 -5.5995 38 1 2.6313 2.6679 -5.1661 39 1 2.5191 0.4027 -7.9893 40 1 3.4653 0.8899 -6.5619 41 1 2.1707 -2.3136 -5.3630 42 1 2.7611 -2.0174 -7.0159 43 1 4.5329 -1.9635 -5.4145 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922836863.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:49 Heat of formation + Delta-G solvation = -118.567004 kcal Electronic energy + Delta-G solvation = -24596.673207 eV Core-core repulsion = 21063.408494 eV Total energy + Delta-G solvation = -3533.264712 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.76728 -39.59448 -38.29594 -37.27158 -35.69642 -34.87139 -33.09033 -32.25035 -29.27573 -27.57162 -27.43244 -26.88467 -26.48301 -23.85425 -23.00446 -20.85403 -20.55688 -19.04840 -18.42896 -17.80089 -17.60045 -16.79378 -16.67144 -16.55298 -16.15656 -16.04158 -15.82131 -15.16598 -15.02362 -14.72328 -14.48108 -14.21453 -14.03773 -13.83579 -13.25103 -13.07570 -12.98066 -12.70162 -12.60685 -12.44940 -12.25428 -12.20839 -12.08976 -11.79698 -11.48293 -11.24577 -11.19878 -10.99197 -10.70457 -10.40607 -10.26141 -9.74277 -9.33162 -8.00493 -6.17025 1.43633 1.45876 1.53260 1.62380 2.27815 2.46186 2.83187 3.00469 3.21648 3.52286 3.72725 3.93008 4.05415 4.12504 4.23368 4.38714 4.43827 4.53639 4.54938 4.59949 4.71010 4.79090 4.81635 4.97589 4.99293 5.03058 5.04585 5.11421 5.19775 5.39429 5.53921 5.64865 5.67942 5.70508 5.96325 6.07785 6.10959 6.25735 6.45648 6.86994 7.00082 7.07048 7.50760 7.70687 8.97128 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.028725 B = 0.004189 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.511780 B = 6683.058780 C = 7266.674360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.113 4.113 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.276 1.276 11 H -0.283 1.283 12 C 0.173 3.827 13 N -0.732 5.732 14 C 0.700 3.300 15 O -0.601 6.601 16 N -0.631 5.631 17 C 0.071 3.929 18 C 0.051 3.949 19 O -0.389 6.389 20 C 0.060 3.940 21 C 0.126 3.874 22 H 0.103 0.897 23 C 0.085 3.915 24 O -0.574 6.574 25 H 0.075 0.925 26 H 0.029 0.971 27 H 0.013 0.987 28 H 0.020 0.980 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.260 0.740 32 H 0.032 0.968 33 H 0.033 0.967 34 H 0.399 0.601 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.134 0.866 38 H 0.046 0.954 39 H 0.127 0.873 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 2.812 -18.257 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.171 4.171 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.204 1.204 10 H -0.202 1.202 11 H -0.209 1.209 12 C 0.049 3.951 13 N -0.390 5.390 14 C 0.402 3.598 15 O -0.482 6.482 16 N -0.370 5.370 17 C -0.051 4.051 18 C -0.027 4.027 19 O -0.307 6.307 20 C -0.018 4.018 21 C 0.022 3.978 22 H 0.121 0.879 23 C 0.007 3.993 24 O -0.380 6.380 25 H 0.093 0.907 26 H 0.048 0.952 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.237 0.763 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.152 0.848 38 H 0.064 0.936 39 H 0.145 0.855 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.448 2.844 -18.324 18.549 hybrid contribution 0.533 -0.885 1.538 1.853 sum 0.086 1.959 -16.786 16.900 Atomic orbital electron populations 1.21740 0.97073 0.98547 1.00628 1.18367 0.93353 0.92891 0.90364 1.21593 0.98312 0.97852 0.99303 1.21239 1.28957 1.14898 0.91571 0.93778 1.25447 0.95002 0.95648 1.00954 1.69891 1.31611 1.28613 1.23621 0.85770 0.78330 0.78884 0.79795 1.20403 1.20152 1.20852 1.21031 0.96340 0.94565 0.83196 1.45456 1.55960 1.33424 1.04121 1.16058 0.79499 0.83422 0.80818 1.90773 1.46743 1.25657 1.84997 1.47272 1.65064 1.20166 1.04533 1.22535 0.98279 0.82425 1.01905 1.23062 1.00168 0.96981 0.82465 1.87918 1.75036 1.39126 1.28641 1.22922 0.94042 0.83462 1.01350 1.22010 0.99366 0.94669 0.81720 0.87941 1.22257 0.84935 0.95465 0.96604 1.86384 1.24703 1.38787 1.88150 0.90661 0.95180 0.96825 0.96082 0.94514 0.92909 0.93034 0.94918 0.94888 0.76295 0.88896 0.89143 0.84785 0.93609 0.85547 0.93342 0.92523 0.91943 0.77063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.04 71.98 0.58 -4.96 16 2 C 0.05 2.38 0.51 -52.93 -0.03 2.35 16 3 C -0.11 -4.99 8.12 71.98 0.58 -4.40 16 4 C -0.53 -28.09 8.01 25.60 0.21 -27.89 16 5 H 0.04 2.40 7.75 -2.91 -0.02 2.38 16 6 C 0.03 1.54 5.15 84.66 0.44 1.98 16 7 N -0.90 -47.85 9.44 21.45 0.20 -47.65 16 8 Si 0.95 42.65 29.54 68.60 2.03 44.67 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.17 7.56 4.51 86.38 0.39 7.95 16 13 N -0.73 -26.52 4.77 -478.55 -2.28 -28.81 16 14 C 0.70 25.01 8.01 179.05 1.43 26.45 16 15 O -0.60 -24.50 10.92 19.37 0.21 -24.29 16 16 N -0.63 -17.38 3.02 -812.18 -2.45 -19.83 16 17 C 0.07 1.49 6.52 86.35 0.56 2.06 16 18 C 0.05 0.95 6.98 72.08 0.50 1.45 16 19 O -0.39 -8.25 10.74 -148.98 -1.60 -9.85 16 20 C 0.06 1.23 6.19 71.94 0.45 1.67 16 21 C 0.13 2.92 3.46 44.83 0.16 3.08 16 22 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 23 C 0.09 2.11 5.80 71.98 0.42 2.53 16 24 O -0.57 -16.53 10.45 -125.63 -1.31 -17.85 16 25 H 0.07 3.78 5.67 -2.39 -0.01 3.77 16 26 H 0.03 1.15 6.86 -2.39 -0.02 1.13 16 27 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.04 1.36 6.74 -2.39 -0.02 1.34 16 30 H 0.05 2.55 6.63 -2.39 -0.02 2.54 16 31 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 32 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.40 12.84 3.84 -92.70 -0.36 12.48 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.09 1.88 5.90 -2.39 -0.01 1.87 16 37 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 39 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.05 1.20 7.32 -2.39 -0.02 1.19 16 41 H 0.06 1.75 5.97 -3.67 -0.02 1.73 16 42 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.38 8.89 9.12 -74.06 -0.68 8.21 16 Total: -1.00 -64.09 327.01 0.47 -63.62 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -0.01 Total: 27.72 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 5.68 Total: 12.26 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -4.53 Total: -96.29 kcal Atomic # 8 Polarization: -49.29 SS G_CDS: -2.70 Total: -51.99 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -64.09 0.47 -63.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922836863.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.948 kcal (2) G-P(sol) polarization free energy of solvation -64.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds