Wall clock time and date at job start Tue Mar 31 2020 03:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36930 * 120.00013 * 2 1 4 4 H 1.07999 * 119.99513 * 160.71358 * 3 2 1 5 5 C 1.38804 * 120.00309 * 340.43813 * 3 2 1 6 6 N 1.31621 * 120.00065 * 347.09417 * 5 3 2 7 7 Si 1.86803 * 120.00399 * 167.09245 * 5 3 2 8 8 H 1.48498 * 109.46730 * 59.99743 * 7 5 3 9 9 H 1.48498 * 109.47512 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46807 * 300.00196 * 7 5 3 11 11 C 1.46498 * 119.99392 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.88562 * 180.70551 * 11 2 1 13 13 C 1.55158 * 111.00725 * 304.58292 * 11 2 1 14 14 C 1.54327 * 102.94045 * 153.58011 * 13 11 2 15 15 N 1.47027 * 107.27077 * 337.80523 * 14 13 11 16 16 C 1.34777 * 125.64608 * 178.97372 * 15 14 13 17 17 O 1.21279 * 120.00118 * 179.97438 * 16 15 14 18 18 C 1.50701 * 120.00031 * 359.97438 * 16 15 14 19 19 F 1.39896 * 110.43944 * 310.70099 * 18 16 15 20 20 C 1.54811 * 110.48639 * 188.15458 * 18 16 15 21 21 C 1.55232 * 101.98576 * 220.52086 * 20 18 16 22 22 O 1.44378 * 103.56639 * 36.87891 * 21 20 18 23 23 C 1.43746 * 106.97634 * 320.01257 * 22 21 20 24 24 C 1.47470 * 108.72252 * 358.97797 * 15 14 13 25 25 H 1.09005 * 109.46845 * 84.82762 * 1 2 3 26 26 H 1.08996 * 109.47451 * 204.82270 * 1 2 3 27 27 H 1.08998 * 109.47405 * 324.83091 * 1 2 3 28 28 H 0.97000 * 120.00315 * 179.97438 * 6 5 3 29 29 H 1.09001 * 110.72166 * 271.93626 * 13 11 2 30 30 H 1.08990 * 110.71824 * 35.04208 * 13 11 2 31 31 H 1.08998 * 109.88406 * 97.22327 * 14 13 11 32 32 H 1.09004 * 109.88360 * 218.39135 * 14 13 11 33 33 H 1.08999 * 110.90931 * 338.63867 * 20 18 16 34 34 H 1.08992 * 110.91137 * 102.24721 * 20 18 16 35 35 H 1.09000 * 110.51882 * 278.38609 * 21 20 18 36 36 H 1.09003 * 110.77924 * 155.50135 * 21 20 18 37 37 H 1.08994 * 109.87381 * 267.08571 * 23 22 21 38 38 H 1.09005 * 109.87404 * 145.93601 * 23 22 21 39 39 H 1.08991 * 110.34695 * 265.25115 * 24 15 14 40 40 H 1.09002 * 110.40103 * 142.91218 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1842 1.2120 0.3089 5 6 1.5158 2.3533 -0.4025 6 7 0.3546 2.2927 -1.0192 7 14 2.3107 4.0105 -0.0688 8 1 3.6329 4.0697 -0.7421 9 1 1.4388 5.0923 -0.5930 10 1 2.4919 4.1868 1.3945 11 6 2.1974 -1.2688 0.0006 12 1 3.2736 -1.0963 0.0130 13 6 1.7634 -2.1610 1.1935 14 6 2.0555 -3.5875 0.6823 15 7 2.0774 -3.5289 -0.7866 16 6 2.3203 -4.5675 -1.6106 17 8 2.3126 -4.4029 -2.8121 18 6 2.6015 -5.9332 -1.0389 19 9 3.5781 -5.8532 -0.0404 20 6 3.0478 -6.9070 -2.1565 21 6 2.3060 -8.2123 -1.7619 22 8 1.0390 -7.7415 -1.2542 23 6 1.3096 -6.5606 -0.4805 24 6 1.7896 -2.1458 -1.2095 25 1 -0.3633 0.0927 -1.0235 26 1 -0.3634 -0.9327 0.4314 27 1 -0.3634 0.8400 0.5919 28 1 -0.0885 3.1085 -1.3002 29 1 2.3599 -1.9388 2.0783 30 1 0.7016 -2.0337 1.4039 31 1 3.0234 -3.9237 1.0544 32 1 1.2716 -4.2682 1.0145 33 1 2.7196 -6.5539 -3.1341 34 1 4.1281 -7.0507 -2.1388 35 1 2.8562 -8.7449 -0.9863 36 1 2.1572 -8.8509 -2.6327 37 1 1.4498 -6.8279 0.5668 38 1 0.4833 -5.8564 -0.5780 39 1 0.7273 -2.0279 -1.4225 40 1 2.3843 -1.8846 -2.0849 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972170215.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:42 Heat of formation + Delta-G solvation = -87.597358 kcal Electronic energy + Delta-G solvation = -23815.658758 eV Core-core repulsion = 20160.276685 eV Total energy + Delta-G solvation = -3655.382073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.148 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -48.20855 -40.19124 -38.93487 -37.48169 -34.92510 -32.10821 -31.68334 -30.04090 -29.54829 -27.85038 -26.11899 -24.62853 -23.38071 -22.48060 -21.87438 -19.54550 -19.39292 -17.64564 -17.12784 -17.07474 -16.67330 -15.82949 -15.70424 -15.27482 -14.80628 -14.77051 -14.31867 -14.00276 -13.48854 -13.45383 -13.32327 -12.95205 -12.52837 -12.47343 -12.31669 -12.06205 -11.89888 -11.82592 -11.51434 -11.12386 -10.93464 -10.85212 -10.56029 -10.48999 -10.33331 -10.23400 -9.95502 -9.86603 -9.70786 -8.65214 -8.47718 -6.90654 -5.80084 -3.25439 2.37079 2.83400 3.35790 3.41301 3.41936 3.44961 3.71501 3.97401 4.20504 4.42964 4.49772 4.68884 4.82983 4.91722 5.14901 5.20780 5.21599 5.31164 5.32972 5.46208 5.48271 5.55893 5.69873 5.74349 5.84387 5.94027 6.21301 6.29358 6.33737 6.39287 6.52992 6.72158 6.79755 7.32651 7.54843 7.64916 7.74888 8.00868 8.29130 9.14343 9.76469 10.23327 11.24540 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.038587 B = 0.003711 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.450341 B = 7542.869317 C = 7582.720411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.072 0.928 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.909 3.091 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.174 3.826 12 H 0.079 0.921 13 C -0.153 4.153 14 C 0.096 3.904 15 N -0.601 5.601 16 C 0.517 3.483 17 O -0.524 6.524 18 C 0.073 3.927 19 F -0.183 7.183 20 C -0.166 4.166 21 C 0.046 3.954 22 O -0.364 6.364 23 C 0.038 3.962 24 C 0.084 3.916 25 H 0.030 0.970 26 H 0.001 0.999 27 H 0.049 0.951 28 H 0.255 0.745 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.288 -18.561 3.218 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.305 5.305 3 C -0.391 4.391 4 H 0.090 0.910 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.739 3.261 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.193 4.193 14 C -0.027 4.027 15 N -0.334 5.334 16 C 0.302 3.698 17 O -0.401 6.401 18 C 0.051 3.949 19 F -0.164 7.164 20 C -0.204 4.204 21 C -0.030 4.030 22 O -0.283 6.283 23 C -0.040 4.040 24 C -0.040 4.040 25 H 0.049 0.951 26 H 0.019 0.981 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.120 0.880 39 H 0.090 0.910 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.974 -18.405 2.463 18.806 hybrid contribution 0.647 1.044 0.295 1.264 sum 3.621 -17.361 2.757 17.948 Atomic orbital electron populations 1.20854 0.82168 0.95727 0.99667 1.43893 1.02035 0.99795 1.84785 1.19217 0.96596 0.84601 1.38731 0.91041 1.24995 0.97537 0.98518 0.98386 1.70081 1.16871 1.27018 1.41104 0.86272 0.78454 0.83384 0.78035 1.20877 1.21581 1.20991 1.21440 0.96502 0.85754 0.90025 0.90277 1.23216 1.03048 0.92560 1.00483 1.22241 1.01532 0.99481 0.79458 1.48539 1.67585 1.09786 1.07512 1.19897 0.78464 0.84792 0.86678 1.90723 1.51943 1.83356 1.14043 1.22501 0.88712 0.95854 0.87818 1.92910 1.63960 1.97233 1.62255 1.23745 1.02982 0.93864 0.99807 1.23694 0.84215 0.95680 0.99408 1.88943 1.28608 1.41524 1.69213 1.23741 0.95709 0.88146 0.96395 1.23272 1.01521 0.78252 1.00906 0.95140 0.98053 0.93253 0.93528 0.90307 0.90234 0.90755 0.92018 0.86621 0.88191 0.91445 0.87763 0.89655 0.87971 0.90984 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.76 7.71 59.85 0.46 4.22 16 2 N -0.58 -13.95 2.97 -171.03 -0.51 -14.45 16 3 C -0.26 -6.95 9.66 -15.07 -0.15 -7.10 16 4 H 0.07 1.84 7.82 -52.49 -0.41 1.43 16 5 C 0.00 0.12 5.11 -17.43 -0.09 0.03 16 6 N -0.91 -25.77 10.50 55.49 0.58 -25.19 16 7 Si 0.91 21.38 29.57 -169.99 -5.03 16.35 16 8 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 C 0.17 3.37 3.54 -65.78 -0.23 3.13 16 12 H 0.08 1.56 7.92 -51.93 -0.41 1.14 16 13 C -0.15 -2.34 6.49 -24.89 -0.16 -2.51 16 14 C 0.10 1.27 5.94 -3.06 -0.02 1.26 16 15 N -0.60 -9.65 3.33 -170.48 -0.57 -10.21 16 16 C 0.52 8.31 6.72 -10.98 -0.07 8.23 16 17 O -0.52 -10.06 15.68 5.56 0.09 -9.97 16 18 C 0.07 0.91 1.18 -90.24 -0.11 0.80 16 19 F -0.18 -2.26 15.02 2.25 0.03 -2.22 16 20 C -0.17 -1.75 6.40 -24.59 -0.16 -1.91 16 21 C 0.05 0.41 7.72 38.34 0.30 0.71 16 22 O -0.36 -4.24 11.52 -35.23 -0.41 -4.65 16 23 C 0.04 0.42 6.36 37.73 0.24 0.66 16 24 C 0.08 1.60 6.49 -2.50 -0.02 1.58 16 25 H 0.03 0.78 7.43 -51.93 -0.39 0.40 16 26 H 0.00 0.02 6.17 -51.93 -0.32 -0.30 16 27 H 0.05 1.26 7.10 -51.93 -0.37 0.89 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.08 1.26 6.17 -51.93 -0.32 0.93 16 31 H 0.07 0.92 6.99 -51.93 -0.36 0.55 16 32 H 0.06 0.69 7.48 -51.93 -0.39 0.30 16 33 H 0.12 1.39 6.80 -51.93 -0.35 1.04 16 34 H 0.10 0.90 8.12 -51.93 -0.42 0.48 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.78 8.03 -51.93 -0.42 0.36 16 38 H 0.10 1.16 7.65 -51.93 -0.40 0.76 16 39 H 0.07 1.45 7.20 -51.93 -0.37 1.08 16 40 H 0.07 1.56 8.04 -51.93 -0.42 1.14 16 LS Contribution 318.89 15.07 4.81 4.81 Total: -1.00 -30.56 318.89 -6.75 -37.31 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.75 Total: -0.87 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 0.00 Total: 9.10 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.49 Total: -49.86 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.32 Total: -14.62 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.03 Total: -2.22 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.56 -6.75 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972170215.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.286 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds