Wall clock time and date at job start Tue Mar 31 2020 03:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 120.00122 * 2 1 4 4 H 1.07997 * 120.00164 * 201.70095 * 3 2 1 5 5 C 1.38812 * 119.99908 * 21.70436 * 3 2 1 6 6 N 1.31620 * 119.99764 * 13.70162 * 5 3 2 7 7 Si 1.86802 * 120.00302 * 193.69620 * 5 3 2 8 8 H 1.48499 * 109.46560 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.46911 * 119.99671 * 7 5 3 10 10 H 1.48499 * 109.47265 * 240.00275 * 7 5 3 11 11 C 1.46500 * 120.00055 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.78344 * 176.76425 * 11 2 1 13 13 C 1.55155 * 110.72055 * 53.52467 * 11 2 1 14 14 C 1.55127 * 101.48552 * 205.96856 * 13 11 2 15 15 N 1.47426 * 104.72336 * 37.29562 * 14 13 11 16 16 C 1.34776 * 125.64729 * 155.81459 * 15 14 13 17 17 O 1.21283 * 119.99793 * 179.69589 * 16 15 14 18 18 C 1.50702 * 120.00203 * 359.69122 * 16 15 14 19 19 F 1.39904 * 110.55967 * 57.32213 * 18 16 15 20 20 C 1.54510 * 110.51255 * 179.97438 * 18 16 15 21 21 C 1.54482 * 104.18154 * 118.57700 * 20 18 16 22 22 O 1.44644 * 104.69819 * 336.19381 * 21 20 18 23 23 C 1.44429 * 105.36803 * 40.34129 * 22 21 20 24 24 C 1.47015 * 108.70140 * 335.55466 * 15 14 13 25 25 H 1.08994 * 109.47640 * 274.46988 * 1 2 3 26 26 H 1.08997 * 109.46665 * 34.47602 * 1 2 3 27 27 H 1.09006 * 109.46829 * 154.46756 * 1 2 3 28 28 H 0.97003 * 120.00077 * 180.02562 * 6 5 3 29 29 H 1.08992 * 111.00661 * 324.21055 * 13 11 2 30 30 H 1.09005 * 111.00134 * 88.02447 * 13 11 2 31 31 H 1.09002 * 110.49877 * 278.45064 * 14 13 11 32 32 H 1.09003 * 110.34015 * 156.06252 * 14 13 11 33 33 H 1.08994 * 110.51288 * 237.29260 * 20 18 16 34 34 H 1.08994 * 110.50844 * 359.86714 * 20 18 16 35 35 H 1.09006 * 110.36855 * 94.92511 * 21 20 18 36 36 H 1.08992 * 110.37279 * 217.26026 * 21 20 18 37 37 H 1.08999 * 110.37249 * 200.73198 * 23 22 21 38 38 H 1.09001 * 110.46552 * 78.44941 * 23 22 21 39 39 H 1.09002 * 109.88665 * 120.70530 * 24 15 14 40 40 H 1.09006 * 109.88055 * 241.71499 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1723 1.2191 -0.3458 5 6 1.5295 2.3454 0.4446 6 7 0.3968 2.2719 1.1110 7 14 2.3023 4.0102 0.0973 8 1 3.5636 3.8213 -0.6634 9 1 1.3616 4.8355 -0.7022 10 1 2.5959 4.6972 1.3807 11 6 2.1975 -1.2687 0.0006 12 1 3.2721 -1.0950 -0.0570 13 6 1.7249 -2.1760 -1.1660 14 6 2.0553 -3.5872 -0.6131 15 7 1.7501 -3.5064 0.8270 16 6 1.4406 -4.5483 1.6240 17 8 1.2121 -4.3645 2.8008 18 6 1.3783 -5.9415 1.0528 19 9 2.5976 -6.2838 0.4585 20 6 1.0073 -6.9614 2.1526 21 6 -0.3263 -7.5723 1.6679 22 8 -0.8899 -6.5721 0.7882 23 6 0.2262 -6.0563 0.0303 24 6 1.8454 -2.1019 1.2509 25 1 -0.3634 0.0801 1.0244 26 1 -0.3632 0.8472 -0.5817 27 1 -0.3633 -0.9274 -0.4430 28 1 -0.0368 3.0821 1.4213 29 1 0.6552 -2.0619 -1.3409 30 1 2.2913 -1.9711 -2.0744 31 1 3.1094 -3.8195 -0.7650 32 1 1.4276 -4.3385 -1.0924 33 1 1.7737 -7.7322 2.2329 34 1 0.8713 -6.4582 3.1098 35 1 -0.1433 -8.4976 1.1216 36 1 -0.9895 -7.7546 2.5134 37 1 -0.0151 -5.0762 -0.3812 38 1 0.4956 -6.7466 -0.7691 39 1 0.8901 -1.7722 1.6592 40 1 2.6269 -1.9940 2.0032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972170217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:49 Heat of formation + Delta-G solvation = -85.023781 kcal Electronic energy + Delta-G solvation = -23970.135473 eV Core-core repulsion = 20314.864999 eV Total energy + Delta-G solvation = -3655.270474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.16150 -40.25875 -38.85089 -37.45142 -34.90765 -32.04835 -31.67618 -29.97046 -29.59789 -27.75487 -26.08723 -24.71148 -23.40584 -22.45895 -21.85582 -19.56254 -19.27117 -17.61771 -17.15390 -17.02955 -16.69295 -15.77458 -15.71068 -15.25684 -14.86460 -14.71803 -14.24062 -13.99292 -13.55462 -13.46283 -13.38845 -12.74516 -12.63393 -12.39679 -12.23621 -12.02713 -11.79126 -11.74120 -11.49424 -11.03660 -10.97640 -10.84775 -10.61029 -10.49443 -10.34767 -10.27773 -9.91615 -9.85813 -9.66803 -8.61555 -8.46426 -6.87819 -5.79931 -3.26888 2.42813 2.87396 3.34626 3.41941 3.43937 3.51253 3.76740 3.98312 4.21974 4.43164 4.52890 4.75518 4.87850 4.88655 5.10266 5.15691 5.22916 5.30259 5.37098 5.46733 5.48050 5.54151 5.69981 5.78747 5.83269 5.92975 6.26101 6.28950 6.32300 6.40510 6.57050 6.77186 6.80048 7.30546 7.58360 7.67326 7.75187 8.06425 8.30419 9.14407 9.76771 10.24933 11.24657 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.035071 B = 0.003938 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.190290 B = 7108.971462 C = 7237.504985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.585 5.585 3 C -0.263 4.263 4 H 0.072 0.928 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.080 0.920 13 C -0.154 4.154 14 C 0.094 3.906 15 N -0.600 5.600 16 C 0.518 3.482 17 O -0.522 6.522 18 C 0.074 3.926 19 F -0.183 7.183 20 C -0.173 4.173 21 C 0.046 3.954 22 O -0.359 6.359 23 C 0.030 3.970 24 C 0.085 3.915 25 H 0.031 0.969 26 H 0.046 0.954 27 H 0.003 0.997 28 H 0.254 0.746 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.184 -18.707 -3.801 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.305 5.305 3 C -0.392 4.392 4 H 0.090 0.910 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.737 3.263 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.193 4.193 14 C -0.029 4.029 15 N -0.333 5.333 16 C 0.302 3.698 17 O -0.399 6.399 18 C 0.052 3.948 19 F -0.163 7.163 20 C -0.211 4.211 21 C -0.030 4.030 22 O -0.277 6.277 23 C -0.047 4.047 24 C -0.039 4.039 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.021 0.979 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.728 -18.399 -3.086 18.670 hybrid contribution 0.730 0.807 -0.100 1.093 sum 1.458 -17.592 -3.186 17.937 Atomic orbital electron populations 1.20825 0.82321 0.95807 0.99573 1.43953 1.01950 0.99863 1.84729 1.19281 0.97925 0.84912 1.37114 0.91014 1.25040 0.97763 0.98635 0.97936 1.70095 1.18810 1.27145 1.38688 0.86155 0.78557 0.84050 0.77574 1.20236 1.21543 1.21667 1.21355 0.96546 0.85949 0.89877 0.90159 1.23410 1.02997 0.92843 1.00095 1.22591 1.00781 0.99352 0.80200 1.48530 1.66452 1.08020 1.10325 1.19885 0.78358 0.85233 0.86298 1.90705 1.49376 1.84341 1.15465 1.22486 0.82761 0.94466 0.95068 1.92916 1.45395 1.93104 1.84933 1.23544 0.99089 0.98091 1.00334 1.23515 0.93877 0.91467 0.94146 1.89266 1.28864 1.55395 1.54163 1.24125 0.85179 1.02037 0.93387 1.23082 1.02667 0.77830 1.00370 0.95104 0.93520 0.97907 0.93614 0.90167 0.90066 0.90827 0.91267 0.88444 0.86725 0.91491 0.87945 0.87025 0.89613 0.90528 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.80 7.82 59.85 0.47 4.26 16 2 N -0.58 -13.98 2.93 -171.39 -0.50 -14.48 16 3 C -0.26 -6.95 9.63 -15.06 -0.14 -7.10 16 4 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 5 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 6 N -0.90 -25.91 10.68 55.49 0.59 -25.31 16 7 Si 0.91 21.36 29.58 -169.99 -5.03 16.33 16 8 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 11 C 0.17 3.34 3.44 -66.10 -0.23 3.11 16 12 H 0.08 1.52 7.93 -51.93 -0.41 1.11 16 13 C -0.15 -2.33 6.60 -24.47 -0.16 -2.49 16 14 C 0.09 1.23 5.91 -2.41 -0.01 1.22 16 15 N -0.60 -9.85 3.27 -170.38 -0.56 -10.41 16 16 C 0.52 8.65 6.90 -10.98 -0.08 8.57 16 17 O -0.52 -10.43 15.61 5.55 0.09 -10.35 16 18 C 0.07 0.95 1.22 -90.21 -0.11 0.84 16 19 F -0.18 -2.28 16.22 2.25 0.04 -2.25 16 20 C -0.17 -1.88 6.51 -25.16 -0.16 -2.04 16 21 C 0.05 0.44 7.65 37.94 0.29 0.73 16 22 O -0.36 -4.50 11.65 -35.23 -0.41 -4.91 16 23 C 0.03 0.34 5.97 37.93 0.23 0.57 16 24 C 0.08 1.63 6.51 -3.07 -0.02 1.61 16 25 H 0.03 0.81 7.32 -51.93 -0.38 0.43 16 26 H 0.05 1.20 7.23 -51.93 -0.38 0.82 16 27 H 0.00 0.05 6.02 -51.93 -0.31 -0.26 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.08 1.28 6.05 -51.93 -0.31 0.97 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.75 5.30 -51.93 -0.28 0.48 16 33 H 0.10 0.85 8.06 -51.93 -0.42 0.44 16 34 H 0.11 1.46 6.50 -51.93 -0.34 1.12 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.11 1.29 6.03 -51.93 -0.31 0.98 16 38 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 39 H 0.08 1.70 7.11 -51.93 -0.37 1.33 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 317.02 15.07 4.78 4.78 Total: -1.00 -31.23 317.02 -6.62 -37.85 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.59 Total: -0.57 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -0.02 Total: 9.34 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.47 Total: -50.21 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.32 Total: -15.26 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.23 -6.62 -37.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972170217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.175 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds