Wall clock time and date at job start Tue Mar 31 2020 03:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 120.00122 * 2 1 4 4 H 1.07997 * 120.00164 * 201.70095 * 3 2 1 5 5 C 1.38812 * 119.99908 * 21.70436 * 3 2 1 6 6 N 1.31620 * 119.99764 * 13.70162 * 5 3 2 7 7 Si 1.86802 * 120.00302 * 193.69620 * 5 3 2 8 8 H 1.48499 * 109.46560 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.46911 * 119.99671 * 7 5 3 10 10 H 1.48499 * 109.47265 * 240.00275 * 7 5 3 11 11 C 1.46500 * 120.00055 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.78344 * 176.76425 * 11 2 1 13 13 C 1.55155 * 110.72055 * 53.52467 * 11 2 1 14 14 C 1.55127 * 101.48552 * 205.96856 * 13 11 2 15 15 N 1.47426 * 104.72336 * 37.29562 * 14 13 11 16 16 C 1.34776 * 125.64729 * 155.81459 * 15 14 13 17 17 O 1.21283 * 119.99793 * 179.69589 * 16 15 14 18 18 C 1.50702 * 120.00203 * 359.69122 * 16 15 14 19 19 F 1.39904 * 110.55967 * 57.32213 * 18 16 15 20 20 C 1.54510 * 110.51255 * 179.97438 * 18 16 15 21 21 C 1.54482 * 104.18154 * 118.57700 * 20 18 16 22 22 O 1.44644 * 104.69819 * 336.19381 * 21 20 18 23 23 C 1.44429 * 105.36803 * 40.34129 * 22 21 20 24 24 C 1.47015 * 108.70140 * 335.55466 * 15 14 13 25 25 H 1.08994 * 109.47640 * 274.46988 * 1 2 3 26 26 H 1.08997 * 109.46665 * 34.47602 * 1 2 3 27 27 H 1.09006 * 109.46829 * 154.46756 * 1 2 3 28 28 H 0.97003 * 120.00077 * 180.02562 * 6 5 3 29 29 H 1.08992 * 111.00661 * 324.21055 * 13 11 2 30 30 H 1.09005 * 111.00134 * 88.02447 * 13 11 2 31 31 H 1.09002 * 110.49877 * 278.45064 * 14 13 11 32 32 H 1.09003 * 110.34015 * 156.06252 * 14 13 11 33 33 H 1.08994 * 110.51288 * 237.29260 * 20 18 16 34 34 H 1.08994 * 110.50844 * 359.86714 * 20 18 16 35 35 H 1.09006 * 110.36855 * 94.92511 * 21 20 18 36 36 H 1.08992 * 110.37279 * 217.26026 * 21 20 18 37 37 H 1.08999 * 110.37249 * 200.73198 * 23 22 21 38 38 H 1.09001 * 110.46552 * 78.44941 * 23 22 21 39 39 H 1.09002 * 109.88665 * 120.70530 * 24 15 14 40 40 H 1.09006 * 109.88055 * 241.71499 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1723 1.2191 -0.3458 5 6 1.5295 2.3454 0.4446 6 7 0.3968 2.2719 1.1110 7 14 2.3023 4.0102 0.0973 8 1 3.5636 3.8213 -0.6634 9 1 1.3616 4.8355 -0.7022 10 1 2.5959 4.6972 1.3807 11 6 2.1975 -1.2687 0.0006 12 1 3.2721 -1.0950 -0.0570 13 6 1.7249 -2.1760 -1.1660 14 6 2.0553 -3.5872 -0.6131 15 7 1.7501 -3.5064 0.8270 16 6 1.4406 -4.5483 1.6240 17 8 1.2121 -4.3645 2.8008 18 6 1.3783 -5.9415 1.0528 19 9 2.5976 -6.2838 0.4585 20 6 1.0073 -6.9614 2.1526 21 6 -0.3263 -7.5723 1.6679 22 8 -0.8899 -6.5721 0.7882 23 6 0.2262 -6.0563 0.0303 24 6 1.8454 -2.1019 1.2509 25 1 -0.3634 0.0801 1.0244 26 1 -0.3632 0.8472 -0.5817 27 1 -0.3633 -0.9274 -0.4430 28 1 -0.0368 3.0821 1.4213 29 1 0.6552 -2.0619 -1.3409 30 1 2.2913 -1.9711 -2.0744 31 1 3.1094 -3.8195 -0.7650 32 1 1.4276 -4.3385 -1.0924 33 1 1.7737 -7.7322 2.2329 34 1 0.8713 -6.4582 3.1098 35 1 -0.1433 -8.4976 1.1216 36 1 -0.9895 -7.7546 2.5134 37 1 -0.0151 -5.0762 -0.3812 38 1 0.4956 -6.7466 -0.7691 39 1 0.8901 -1.7722 1.6592 40 1 2.6269 -1.9940 2.0032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972170217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:48 Heat of formation + Delta-G solvation = -106.377872 kcal Electronic energy + Delta-G solvation = -23971.061456 eV Core-core repulsion = 20314.864999 eV Total energy + Delta-G solvation = -3656.196457 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.148 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -49.14158 -41.47532 -39.92809 -38.86888 -36.66064 -33.62735 -32.82789 -31.45326 -30.64760 -29.15246 -28.08443 -26.01696 -24.65638 -23.85508 -22.90471 -20.95810 -20.65439 -18.99231 -18.75948 -18.00217 -17.92824 -17.22893 -16.80842 -16.55815 -16.19601 -15.72256 -15.61200 -15.14188 -15.09567 -15.03408 -14.54586 -14.28721 -14.03284 -13.84456 -13.54603 -13.21665 -13.20608 -12.80436 -12.69645 -12.60269 -12.53376 -12.40401 -12.22301 -12.07693 -11.91185 -11.81350 -11.46587 -11.27682 -10.79785 -10.65881 -9.85305 -8.86104 -7.85416 -5.34712 1.14965 1.47051 1.48541 1.58666 1.61707 2.49690 2.67438 2.77493 3.04237 3.18892 3.28376 3.50328 3.71346 3.75425 3.92799 3.98142 4.12461 4.22600 4.25653 4.33585 4.39239 4.46245 4.58314 4.67122 4.73329 4.75595 4.80575 4.93501 4.96750 5.09057 5.16886 5.26307 5.38946 5.55303 5.63177 5.68904 6.28627 6.28786 6.74800 7.10843 7.81368 8.25499 9.18060 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.035071 B = 0.003938 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.190290 B = 7108.971462 C = 7237.504985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.600 5.600 3 C -0.266 4.266 4 H 0.081 0.919 5 C -0.053 4.053 6 N -0.940 5.940 7 Si 0.971 3.029 8 H -0.261 1.261 9 H -0.292 1.292 10 H -0.297 1.297 11 C 0.166 3.834 12 H 0.086 0.914 13 C -0.139 4.139 14 C 0.097 3.903 15 N -0.602 5.602 16 C 0.507 3.493 17 O -0.567 6.567 18 C 0.081 3.919 19 F -0.177 7.177 20 C -0.173 4.173 21 C 0.047 3.953 22 O -0.385 6.385 23 C 0.033 3.967 24 C 0.096 3.904 25 H -0.006 1.006 26 H 0.021 0.979 27 H 0.034 0.966 28 H 0.248 0.752 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.039 0.961 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.350 -21.092 -6.038 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.321 5.321 3 C -0.396 4.396 4 H 0.099 0.901 5 C -0.248 4.248 6 N -0.587 5.587 7 Si 0.799 3.201 8 H -0.185 1.185 9 H -0.218 1.218 10 H -0.224 1.224 11 C 0.057 3.943 12 H 0.104 0.896 13 C -0.178 4.178 14 C -0.024 4.024 15 N -0.334 5.334 16 C 0.294 3.706 17 O -0.446 6.446 18 C 0.059 3.941 19 F -0.157 7.157 20 C -0.211 4.211 21 C -0.029 4.029 22 O -0.304 6.304 23 C -0.044 4.044 24 C -0.030 4.030 25 H 0.012 0.988 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.140 0.860 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.140 0.860 39 H 0.058 0.942 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.930 -20.837 -5.367 21.603 hybrid contribution 0.408 1.467 0.640 1.651 sum 2.338 -19.370 -4.726 20.075 Atomic orbital electron populations 1.20481 0.82836 0.96182 0.97130 1.44130 1.01965 1.01018 1.84987 1.19691 0.98251 0.85977 1.35710 0.90142 1.25830 0.98488 1.02058 0.98397 1.70277 1.20478 1.27430 1.40483 0.85143 0.78183 0.79778 0.76952 1.18502 1.21836 1.22398 1.21571 0.96534 0.84739 0.91434 0.89592 1.23281 1.02743 0.92634 0.99156 1.22819 1.02858 0.98891 0.77878 1.48598 1.66250 1.06639 1.11880 1.20761 0.77133 0.86844 0.85882 1.90684 1.51036 1.85360 1.17515 1.22408 0.83631 0.91793 0.96303 1.92931 1.45230 1.92767 1.84817 1.23584 1.00902 0.98050 0.98548 1.23734 0.92893 0.91745 0.94536 1.89242 1.29793 1.56445 1.54893 1.24230 0.83961 1.02838 0.93397 1.22646 1.00050 0.80253 1.00041 0.98774 0.96012 0.94776 0.94314 0.90908 0.87544 0.88597 0.88051 0.86003 0.89233 0.88225 0.87073 0.87631 0.86032 0.94223 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.79 7.82 127.77 1.00 9.78 16 2 N -0.60 -28.98 2.93 -696.15 -2.04 -31.02 16 3 C -0.27 -14.15 9.63 84.03 0.81 -13.34 16 4 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 5 C -0.05 -2.91 5.08 84.86 0.43 -2.48 16 6 N -0.94 -55.99 10.68 21.65 0.23 -55.76 16 7 Si 0.97 44.46 29.58 68.60 2.03 46.49 16 8 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 9 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 10 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 11 C 0.17 6.28 3.44 46.18 0.16 6.44 16 12 H 0.09 3.14 7.93 -2.39 -0.02 3.12 16 13 C -0.14 -3.83 6.60 32.06 0.21 -3.62 16 14 C 0.10 2.22 5.91 86.93 0.51 2.74 16 15 N -0.60 -19.18 3.27 -811.35 -2.66 -21.84 16 16 C 0.51 16.68 6.90 87.66 0.60 17.28 16 17 O -0.57 -23.34 15.61 -3.04 -0.05 -23.39 16 18 C 0.08 1.86 1.22 -10.53 -0.01 1.85 16 19 F -0.18 -3.77 16.22 44.97 0.73 -3.04 16 20 C -0.17 -3.41 6.51 31.61 0.21 -3.20 16 21 C 0.05 0.74 7.65 72.49 0.55 1.30 16 22 O -0.38 -8.71 11.65 -148.98 -1.74 -10.44 16 23 C 0.03 0.63 5.97 72.48 0.43 1.07 16 24 C 0.10 3.77 6.51 86.73 0.56 4.34 16 25 H -0.01 -0.34 7.32 -2.39 -0.02 -0.36 16 26 H 0.02 1.14 7.23 -2.39 -0.02 1.12 16 27 H 0.03 1.42 6.02 -2.38 -0.01 1.41 16 28 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.07 2.15 6.05 -2.39 -0.01 2.13 16 30 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 31 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.10 1.75 5.30 -2.39 -0.01 1.74 16 33 H 0.12 1.76 8.06 -2.39 -0.02 1.74 16 34 H 0.09 2.26 6.50 -2.39 -0.02 2.24 16 35 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.11 2.11 6.03 -2.39 -0.01 2.10 16 38 H 0.12 1.49 8.12 -2.39 -0.02 1.47 16 39 H 0.04 1.85 7.11 -2.39 -0.02 1.84 16 40 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -71.13 317.02 3.03 -68.10 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 1.05 Total: 8.75 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 5.47 Total: 22.16 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -4.47 Total: -108.62 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -1.78 Total: -33.83 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.73 Total: -3.04 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -71.13 3.03 -68.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972170217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.278 kcal (2) G-P(sol) polarization free energy of solvation -71.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds