Wall clock time and date at job start Tue Mar 31 2020 03:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86808 * 120.00019 * 2 1 4 4 H 1.48500 * 109.47106 * 240.00371 * 3 2 1 5 5 H 1.48501 * 109.46861 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46944 * 119.99887 * 3 2 1 7 7 C 1.38813 * 120.00646 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00295 * 193.00395 * 7 2 1 9 9 N 1.36941 * 119.99237 * 13.00085 * 7 2 1 10 10 C 1.43534 * 118.93422 * 207.40221 * 9 7 2 11 11 C 1.53797 * 107.98755 * 273.63554 * 10 9 7 12 12 C 1.47136 * 111.84115 * 281.69755 * 11 10 9 13 13 N 1.48209 * 110.34689 * 58.29531 * 12 11 10 14 14 C 1.34779 * 119.97142 * 102.48640 * 13 12 11 15 15 O 1.21280 * 120.00012 * 175.12853 * 14 13 12 16 16 C 1.50704 * 120.00251 * 355.12762 * 14 13 12 17 17 F 1.39907 * 110.45214 * 312.90179 * 16 14 13 18 18 C 1.54506 * 110.51335 * 190.29972 * 16 14 13 19 19 C 1.54482 * 104.06146 * 241.35422 * 18 16 14 20 20 O 1.44431 * 104.80254 * 23.97614 * 19 18 16 21 21 C 1.44427 * 105.27535 * 319.48933 * 20 19 18 22 22 C 1.43618 * 120.05532 * 282.46717 * 13 12 11 23 23 C 1.48849 * 118.94659 * 27.45559 * 9 7 2 24 24 H 0.97005 * 120.00417 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.72870 * 154.02573 * 10 9 7 26 26 H 1.08993 * 109.81376 * 33.29934 * 10 9 7 27 27 H 1.09002 * 109.01059 * 161.09024 * 11 10 9 28 28 H 1.08997 * 108.94722 * 42.26504 * 11 10 9 29 29 H 1.09005 * 109.32779 * 298.02560 * 12 11 10 30 30 H 1.09001 * 109.18122 * 178.47637 * 12 11 10 31 31 H 1.09004 * 110.50836 * 359.97438 * 18 16 14 32 32 H 1.09000 * 110.51362 * 122.57119 * 18 16 14 33 33 H 1.08993 * 110.37240 * 142.80501 * 19 18 16 34 34 H 1.09000 * 110.37356 * 265.03845 * 19 18 16 35 35 H 1.08996 * 110.37242 * 281.67798 * 21 20 19 36 36 H 1.09004 * 110.37055 * 159.34275 * 21 20 19 37 37 H 1.08993 * 108.87305 * 329.89871 * 22 13 12 38 38 H 1.09002 * 108.79224 * 211.41174 * 22 13 12 39 39 H 1.09004 * 109.47537 * 20.61154 * 23 9 7 40 40 H 1.08995 * 109.48217 * 260.59662 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0695 -1.2141 0.2099 9 7 1.3519 -2.3727 -0.2679 10 6 1.8588 -3.5964 0.2850 11 6 2.9225 -4.1484 -0.6790 12 6 2.3147 -4.8148 -1.8415 13 7 1.4363 -3.8726 -2.5745 14 6 1.8645 -3.3051 -3.7196 15 8 1.1153 -2.6039 -4.3660 16 6 3.2743 -3.5418 -4.1967 17 9 4.1820 -3.3637 -3.1471 18 6 3.6138 -2.5982 -5.3720 19 6 3.9154 -3.5551 -6.5466 20 8 3.2136 -4.7742 -6.2190 21 6 3.4110 -4.9573 -4.8001 22 6 0.1291 -3.5641 -2.0660 23 6 0.1344 -2.3353 -1.1234 24 1 -0.4851 0.8401 0.0004 25 1 1.0474 -4.3167 0.3901 26 1 2.3086 -3.4035 1.2589 27 1 3.5474 -4.8649 -0.1457 28 1 3.5456 -3.3248 -1.0276 29 1 1.7258 -5.6668 -1.5018 30 1 3.1039 -5.1643 -2.5071 31 1 2.7617 -1.9607 -5.6083 32 1 4.4888 -1.9929 -5.1354 33 1 3.5383 -3.1396 -7.4810 34 1 4.9871 -3.7403 -6.6196 35 1 4.4051 -5.3590 -4.6040 36 1 2.6464 -5.6189 -4.3929 37 1 -0.2488 -4.4272 -1.5181 38 1 -0.5356 -3.3614 -2.9058 39 1 0.1356 -1.4214 -1.7175 40 1 -0.7541 -2.3574 -0.4924 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981819902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:00 Heat of formation + Delta-G solvation = -105.727982 kcal Electronic energy + Delta-G solvation = -25187.379266 eV Core-core repulsion = 21531.210991 eV Total energy + Delta-G solvation = -3656.168276 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.148 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -49.12361 -41.45117 -39.87763 -38.56082 -36.16437 -33.98766 -33.15299 -32.58997 -30.65121 -29.17696 -27.17415 -25.79456 -24.98517 -23.88479 -22.47863 -21.45448 -20.28136 -18.83887 -18.52749 -18.07809 -17.73725 -17.20125 -16.74307 -16.29901 -16.06487 -15.78728 -15.55658 -15.54146 -14.99837 -14.89837 -14.70425 -14.30097 -14.04543 -13.85067 -13.48196 -13.21900 -13.10743 -12.82882 -12.72608 -12.63948 -12.44928 -12.26574 -12.11904 -11.89525 -11.79819 -11.71945 -11.41531 -11.13857 -10.70905 -10.55276 -9.66013 -8.65135 -7.87965 -5.34154 1.27854 1.37770 1.41389 1.46665 1.92630 2.47356 2.71416 2.85441 3.09896 3.25225 3.26722 3.69727 3.75279 3.98123 3.98750 4.14381 4.21191 4.28807 4.36490 4.47692 4.51066 4.54583 4.65288 4.73516 4.77226 4.79925 4.92609 4.94281 5.00508 5.25670 5.27223 5.53602 5.54083 5.57422 5.66989 5.78207 6.30966 6.38614 6.98032 7.15280 7.92568 8.33685 9.16774 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.019351 B = 0.006707 C = 0.006035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.604027 B = 4173.728646 C = 4638.381863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.956 3.044 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.256 4.256 8 H 0.060 0.940 9 N -0.603 5.603 10 C 0.153 3.847 11 C -0.163 4.163 12 C 0.113 3.887 13 N -0.575 5.575 14 C 0.497 3.503 15 O -0.569 6.569 16 C 0.070 3.930 17 F -0.182 7.182 18 C -0.177 4.177 19 C 0.054 3.946 20 O -0.378 6.378 21 C 0.042 3.958 22 C 0.099 3.901 23 C 0.180 3.820 24 H 0.247 0.753 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.023 0.977 40 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.068 -14.154 -8.620 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.785 3.215 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.078 0.922 9 N -0.326 5.326 10 C 0.027 3.973 11 C -0.204 4.204 12 C -0.007 4.007 13 N -0.305 5.305 14 C 0.283 3.717 15 O -0.449 6.449 16 C 0.048 3.952 17 F -0.162 7.162 18 C -0.215 4.215 19 C -0.022 4.022 20 O -0.297 6.297 21 C -0.035 4.035 22 C -0.026 4.026 23 C 0.054 3.946 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.115 0.885 28 H 0.065 0.935 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 8.443 -13.837 -9.025 18.553 hybrid contribution 0.127 1.927 0.575 2.014 sum 8.570 -11.910 -8.451 16.933 Atomic orbital electron populations 1.70132 1.06387 1.25493 1.56221 1.25732 0.96071 1.01216 1.01569 0.85513 0.77750 0.80161 0.78123 1.21444 1.22007 1.19527 1.19347 0.91570 0.86115 1.41639 0.92210 1.43850 1.29846 1.03392 1.55494 1.20537 0.95058 0.87305 0.94422 1.21777 0.99970 1.00844 0.97775 1.21210 0.94099 0.91168 0.94223 1.47536 1.17051 1.44107 1.21776 1.20911 0.89697 0.79519 0.81584 1.90645 1.57335 1.39559 1.57312 1.22516 0.84728 1.01370 0.86584 1.92926 1.67578 1.96568 1.59137 1.23569 1.04696 0.99352 0.93886 1.23599 0.98561 0.82450 0.97609 1.89174 1.75068 1.43330 1.22111 1.24145 1.05735 0.91942 0.81684 1.21786 0.83929 0.99302 0.97596 1.21485 0.88190 0.94526 0.90392 0.94404 0.92758 0.94353 0.88538 0.93546 0.87750 0.88647 0.89866 0.87462 0.86961 0.88437 0.86455 0.86690 0.88535 0.91750 0.95869 0.96226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.48 10.97 21.65 0.24 -57.24 16 2 C -0.05 -2.96 4.97 84.86 0.42 -2.54 16 3 Si 0.96 47.41 29.57 68.60 2.03 49.44 16 4 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 5 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.26 -14.39 9.26 84.03 0.78 -13.62 16 8 H 0.06 3.33 7.86 -2.91 -0.02 3.30 16 9 N -0.60 -29.88 2.53 -697.95 -1.77 -31.65 16 10 C 0.15 5.87 5.63 87.20 0.49 6.36 16 11 C -0.16 -4.98 5.46 29.04 0.16 -4.82 16 12 C 0.11 2.92 4.75 84.23 0.40 3.32 16 13 N -0.58 -20.07 2.46 -831.24 -2.04 -22.11 16 14 C 0.50 18.86 6.66 87.66 0.58 19.45 16 15 O -0.57 -26.21 14.85 -3.03 -0.04 -26.26 16 16 C 0.07 2.05 1.17 -10.52 -0.01 2.04 16 17 F -0.18 -5.58 13.36 44.97 0.60 -4.98 16 18 C -0.18 -4.76 6.51 31.61 0.21 -4.56 16 19 C 0.05 1.06 7.63 72.49 0.55 1.62 16 20 O -0.38 -9.09 11.65 -148.98 -1.74 -10.82 16 21 C 0.04 0.90 5.73 72.48 0.42 1.31 16 22 C 0.10 3.79 5.30 87.55 0.46 4.26 16 23 C 0.18 8.98 5.17 86.56 0.45 9.42 16 24 H 0.25 14.88 8.31 -92.70 -0.77 14.10 16 25 H 0.05 1.84 7.59 -2.39 -0.02 1.82 16 26 H 0.04 1.52 8.02 -2.39 -0.02 1.50 16 27 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.05 1.75 6.31 -2.39 -0.02 1.74 16 29 H 0.10 2.03 8.05 -2.38 -0.02 2.01 16 30 H 0.10 1.99 4.39 -2.39 -0.01 1.98 16 31 H 0.08 2.75 6.56 -2.38 -0.02 2.74 16 32 H 0.11 2.58 8.06 -2.39 -0.02 2.56 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.12 1.75 8.13 -2.39 -0.02 1.73 16 36 H 0.12 2.21 6.98 -2.38 -0.02 2.20 16 37 H 0.10 2.99 7.73 -2.39 -0.02 2.97 16 38 H 0.06 2.59 7.30 -2.39 -0.02 2.57 16 39 H 0.02 1.37 6.65 -2.38 -0.02 1.35 16 40 H 0.02 1.05 7.97 -2.39 -0.02 1.03 16 Total: -1.00 -75.01 309.27 3.23 -71.79 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.05 Total: 9.61 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 4.91 Total: 22.24 kcal Atomic # 7 Polarization: -107.44 SS G_CDS: -3.57 Total: -111.01 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -1.78 Total: -37.08 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.60 Total: -4.98 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -75.01 3.23 -71.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981819902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.941 kcal (2) G-P(sol) polarization free energy of solvation -75.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds